AMCG00005649 (flot2,LOC103133852)


Basic Information

Item Value
gene id AMCG00005649
gene name flot2,LOC103133852
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6400618 ~ 6424353 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005649
CTTGGGCGGAGGCGGTGGAGCGGACGAGcgaagtgtgtttgtgtgtattgtgcGTACGGTGGCGGCGGACATAGTGGAAATCGGGATTTAAACCGCGTTCAAAGCATTTGTCATAAAAGAGAATAAGAACCGCAGCCGCTTGAATCATGGGGAATTGCCACACCGTCGGACCCAATGAAGCTCTAGTAGTTTCAGGTGGCTGCTGTGGCTCCGACGAGAAGACCTACATGGTGGGAGGGTGGGCGTGGGCCTGGTGGTTCATTTCAGACACCCAAAGAGTGACTCTGGAGGTAATGACCATCCTCTGTCGCTGCGAGCATATCGAAACCTCGGAGGGTGTCCCCTTGGATGTGACAGGGGTCGCTCAGGTAAAAATTATGACTGAGAATGAACTGCTGGGAGTTGCTTGCGAGCAGTTTTTAGGGAAATCCGTCCAGGaaatcaaaaatgttgttttgcaaaCCTTAGAGGGCCATCTGCGTTCAATCTTGGGCACTCTGACTGTGGAGCAGATATATCAGGACAGGGACCAGTTTGCCAAGCTGGTGCGGGAGGTGGCAGCTCCAGACGTGGGCCGCATGGGCATCGAGATTCTCAGCTTCACAATCAAGGATGTGTATGACAAGGTGGAGTACTTGAGCTCTCTGGGGAAGACCCAGACGGCCGCTGTCCAAAGAGACGCCGACATCGGAGTGGCTGAAGCGGAGAGAGATGCGGGAATTAGGGAAGCGGAGTGTAAAAAGCAGATGATGGACATCAAGTTCCAGGCTGACACTAAAATGGCAGATTCCAAGCGGGAACTGGAATTGCAGAAAGCCGCTTTCAACCAGGAAGTGAACACTAAGAAAGCAGAGGCCCAGCTGGCGTATGAGCTGCAGGCGGCCAAGGAGCAGCAGCAGATCCGGCAAGAGGAGATTGAGATCGAGGTGGTGCAGCGCAAGAAGCAGATCACCATCGAGGAGAAGGAGATCTCTAGGACAGAGAAAGAGCTGATCGCCACGGTCAAAAGGCCCGCCGAGGCAGAGGCCTACAAGATCAAGCAGCTGGCCGAGGGGCAGAAAATCAAGAAGGTGCTGAACGCTCAGGCCGAGGCGGAGAAGATCCGCCGGATAGGAGAGGCGGAGGCGGCCTCCATCGAGGTAGTGGGTAAAGCCGAGGCGGAGAGGATGAAGCTGAAGGCTAAGGCCTATCAGATGTACGGGGAAGCGGCCAAGACCGCCCTCGTCCTGGAAGCTCTTCCAAAGATCGCGGCCAAGGTGGCAGCCCCCCTGTCCAAGACCAGCGAGATCGTGATCCTCAGCGGAGACAGCAACCGTGTGACTGGGGAGGTGAACCGCCTGCTGGCCGAGCTGCCCGTGTCTGTCAATGCCCTGACCGGAGTCGACTTGTCCAAGATTCCTTTACTGCAGAAAATAACCAACCCTCAAGCATGAAGACAGTGACCTCTCTCTACTCGAACATGTCTGTTTTATGCACTCTCTCACGTCGACTGCCTTCAAAACACTTGAAAATTGAGTCTTTTCTAAAGACAAgtggatttttttaaagcctCTGGTGCCTTATTTTATAGGGCCAGATGTTATGCATGCAACActcccccttttttattttgttttttttgggctTTTTACaaccaaaatgttttgaaaCCAATCCAAAAACAATATCGTGACGGGTGAAGCTCTCCACTCATATCGGTCTGTTTCTCACCCTGCTGGAATCAGAGCCGCAGTTTGAGCAGTGGCGTTGACCAGCGTCCACACGCCAGAAAGAGTGTCAGACTGTGTCGTAGCCGTAACAGCCTGTTGAGTTGAAAAGGCGCAGTATTACGGAATTATTACGATGTCTgtaatatgaatttattttgtttgagaaTATGAGTTGTCTTTAGTTAGTCCTTCATACGGAAAAGACGGGGAGGTTTGTCTGTTGGCGTATGTCGTGCATGTATCCCTGTTTTGAACGTATATAATCTGCAATGGGATCCTTGCTGGGTCACCCCCAGCTTCACAGTGAAACCACTGTCGGTGACTGGGTCTGGTCTCCTCTGAAACGCTCTCCAGTACATTGAACCTTGTTTTGAATGGTCCGGTTCCTGATCAGATTTAATTAACTGAACACGAGACATGTTACCGATGCAGGCAGGGATGTCTTGCGCTCTTCAGTTCTCCCAAAAGGCACCACAGTTTatttcaaaaattaaaaaaattacaaatctgaatCCTTTAGGTTTAGGAGCAGTTAACGTGTCACAGCACTGCCATCTGAATAAGCTGTGGTTCTGTTTGGAAGTACGTGTTCCTTGTTCTGGTTTGATGGTCTCACTGTAATAGGGCAATTTCCCACCCCCATCCAGTCTTGTTTATGCAGTTGCATCACTCAGAAAAAGCAGCTCGCTTCATCTGGTCACCTGACTAATTACACTACTTTTGCAGCGCTTAAAATGAAATCAGTCTTGTTTTATCTACTTTTAAGCTTAAactcttgtttttttcattgttataaGTGTTAACGTGGCCAGATTGAGTTAAAATGGCCGTCTGATTCTTGAGccattgattgttttaatattactttttttttaagcctctCCTTTCTTAAAGTCTGCCTTGGTCCTCCCCAGGGAAAAGCTAAAATTGCCTTAAGATCTGTGCACCACCAGGTGGAGAATTAAAGCTTCATTGTGACGTCTGTGCAACCCCAAATAAAGTAGAGGAGTGCGTTCATGACCCAGGTCCATTATTGTCGCATTCTTGTGTCCAGCTTCAGTTTCTCTCTTACGCAGCCTGTGTTGATGAGCTCCTGTGCATGTATGAAGCTGTATTCGCTTGAAATACTTAAACCTATAGCCAGACACTGGCCGCTTTTGGTGAGAAATTGTATTAACAGCGAGGCCTGCTCCCGGGATGTGATGGGAGAATTGTGTGCACGGTCTGTTTATGGACTAAACGGTCAGAAAATCTGCTTATTTTTAGCCGCTGGTGATAAATGTTGTTGAATCGTTAATTGCCGACtttgagaggagagagaaaataagttCGTTTTTTGGTTTGATCtattttcagcttcagtttgttttttaagcttgGTATACAAATTGCTATTCAGTGGTATAACTGACTGTTTATTGTGAAGGTTTCATTAGTGTAAGATTCAGTCAGATCAAAGTCTGGggaagggtggggggtggatCTACATGTCAAaggttgataaaaaaaaaaaatgtaaaccaggAAAACGCAGAATCGTAACATCCGTTCTTGATACTAGGCTGTTAAACCGATTTAACAGATCTGAGCTGATTAAAATGTGCAGGATAGGCTCTATTTTTAGACTTGGAAAGGTCAACTTTGTTTCCTTCTCATCGTGAAGCTGCTCTTGCCAGGCCCAAGATGCTCTCGTCTCGCCTTTGTCAGGAGACGGGGGACGCGTTACATCTATGAACTGGGCAGTGCATTTTCTGCAGCTGCAGCCTTTCGTGGAAAGCATATCTAATAGCTCGGAGGCCCAGCGAAGATTAGGAAACGCATCTCAAATGTAGGATTGTTGACGGCGTAATTGGCCAGACATCAAGGAACACAGCCGACCCATTTCCGGTAAATCTTACCCAAATGTAATCAGCTGCAAAGCTTTATTGGCAGCCGCCTAATTGGGGGGCTCATTTTGTAGAGGGTATATcagtgggggaggggagcaAATCCAGAGGGCAGTTTTCAGCTGGTTTTGGTTTGTTCGAAGGCCTGAAGTTGAGCTGCTTCTGTGAGGCCCTAACAAGGGAAGCTTAAccctttctctccctgtttTGGAATTGTAAACAGGATGAATCTGCCTTGGCACGCTCCTGCCATACCAGACATTAAAATTCCCAGGCCGGTTGGCGGCAAAATGGGAAAAGAAAGTTAATGCTCGTCACGGGAGGATCTTTAATTGTGAACGTTAtccagaataataaaaatattcaatCACCGATTCATGGCATGCAGGTATACAAAAAGCAGGTCGATGTGTATTCGTGAGTGTCCGTGCGTGCTTGTGTATGTGACTATAACCCTATATGTAAAGCCATATCATCAGAAATCAAAGGCCTTAATCGGAGCCGAAGACCGTCCGGCTCTGGACATCCTTTATACTTCTACATGACAGCGGGCCAGATTATTATCCTGGAACTTGCTGTTTGCCAGACCTAAGCTTTAACAACTTTTAGGATTTTAACTTTCTACTTAAtcgttttaatatatattcttatactTTTTAGTTGTAGcttaaatgcagattttttttttttcatgttggtgGAAATTCTATGGATCCTTTTATTCACGTAgttggggggaaacaaaaatgaatgtgcGTGCAGTTTACacttgtgttttacatttactaGATTTTACTAGTAATGGTTGAAGCTAGTTCTAGTCGAAGAAGACAAATCAAAATCTTGTGAATGAGCTTTATGCACAGTAGCTTTCCGCCTCGGTTTCATGTGTGCTCGAAATTAAGAAAATCTGCAGGTAGTTTCTGTTATAGCtgtattcaatatataaatatatatatatacactattttGAGTAATGGAGTACATAATTGTATAGGAAATCTCTGAAAATTTGCATATAGTCACATTCCTTTCACTTGCCTTGTTCTGACGTCATTAGTGTATATAACAGCCCTTGgttatttttgtgtatattgtgattttacttttatttttttatacaaccGATAATCGAGAGGGGGGAGGTGGCATTTAAGTATCGAGAGTGGAAAGACAATGTGAAAGTCCACCTCCCCCCACCGTGAAGTCTACAAGGTGCTtctcttgtctgtgattggtcAGGGACTCGGTGGGGCGAAGGTAAAAGCATCTGgggaaaggttttttttttattttctgtttttaatcctCGATTTGAAAGACGTGCTGTGAAGGACTAGGCCTCCTGTTGCTCACAGGAGAGAAGGAATTCAAGGTATTTCAATCAAAACTTCTACATGTAtgcagtcatttattttctctgtgaatGTGAACTACTTTTGAAAGGCGGGGGGAGGGAAGGTTTGGCTTCATGCTCGTTGATTGAAACTCACAAGCTGGATTAAAACGCTCCTGAGGCCGTGTTGGAGGGATATTCACAGACACGATTGGGGAATGGGATGacgtttataaaaataaatctaagaAAAACATATCAACCAGACTATGAGGTTCAGTCCTCAGGAATGTCCTCACATCTTTAAATAGACATTGGCGTGAACTGCTCTTTCTAGAAGTCTGACCAAGGAAAGCACCCATGATCTGATCTGTAGGATGCTTTCACTGCAGTAATTTAGGATTTTCCATCAGTCTGCATTTAGTGCATTCAAAATGTAGAGATGGAAAACGAAAGTCTAATCTAGGTATTCAGCGATTTAGGTTTTGAGGAATCGTCATATGGGTAGGCATTGAGGTTGAGGTTTCACAGGGATGCGAAACTGCCACCagatggtttttattttgttgtaatcACTTGTGGACTGTGTGATCAGGTTAGAAATGGAGAATGAACAGTTACTGAAACCTCCTTCCTTTTATTCTCCCACGTAACCCCAAATGACAGTTCAGGGctttacacttttatttatcCATCGAGTTGATTGGCTCACTCTGCCCTCAGTGCCAAATCACAATGAAGGTTTCAAAACGCATCTCGGATAGAGTAGTCCATATCGTACCGTTTTCATTGCCGATCTGGTCGCGGCGAAGTAGGGTTTCATCGCCGGCAGCCACTACTTTGGGATCAGGAGTGTGGTGGACTAGAGATAATTAAACACGGATCGGGAAAAAATGTAGATacaaaaactgaacatttctaatttttttgtttgtctgttttatatGATGTCGGGTGTAGAAAGGAGTCCCATATGCTTAAGCACTGAGTTAATCCTAAATGTGTCAATCAGTTCGTTTGATCTCTTATTGAAGACTGTTATGTACTCGATTTGTCATGATCCTGCATGTACATTTTTGCATGTGCCTGTTACATTAATTTCCTTGTAGATGTTAGCCTGACATATTGGAATGTTATCcacataaatgtaataaatgttttgttgccACA

Function

symbol description
flot2 Predicted to enable ionotropic glutamate receptor binding activity and protease binding activity. Involved in several processes, including negative regulation of macromolecule metabolic process; positive regulation of NF-kappaB transcription factor activity; and protein localization to cell periphery. Located in several cellular components, including basolateral plasma membrane; cytoplasmic vesicle; and uropod. Part of flotillin complex. Colocalizes with cortical actin cytoskeleton.

NR:

description
PREDICTED: flotillin-2 isoform X2

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005768 endosome cellular_component
GO:0030139 endocytic vesicle cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
K07192 FLOT; flotillin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005649 True 6101 mRNA 0.44 11 6400618 6424353

Neighbor

gene id symbol gene type direction distance location
AMCG00005650 dhrs11,LOC107562199 coding upstream 12125 6376102 ~ 6388493 (+)
AMCG00005637 NA coding upstream 42970 6355933 ~ 6357648 (+)
AMCG00005635 ggnbp2 coding upstream 46304 6344912 ~ 6354314 (+)
AMCG00005636 NA coding upstream 57196 6340924 ~ 6343422 (+)
AMCG00005634 NA coding upstream 98414 6300937 ~ 6302204 (+)
AMCG00005648 fam222b coding downstream 43257 6467610 ~ 6476823 (+)
AMCG00005666 emc6,LOC107553592,LOC107552561 coding downstream 83932 6508285 ~ 6508617 (+)
AMCG00005670 NA coding downstream 96499 6520852 ~ 6527544 (+)
AMCG00005668 NA coding downstream 127351 6551704 ~ 6560667 (+)
AMCG00005669 LOC107676655,LOC107718355,LOC107680877,LOC107553589 coding downstream 143734 6568087 ~ 6570099 (+)
G153390 NA non-coding upstream 6890 6333252 ~ 6393728 (+)
G153381 NA non-coding upstream 69247 6282988 ~ 6331371 (+)
G153348 LOC107090330,LOC102220786 non-coding upstream 166571 6232159 ~ 6234047 (+)
G153312 NA non-coding upstream 352180 6048130 ~ 6048438 (+)
G153274 NA non-coding upstream 445167 5916835 ~ 5955451 (+)
G153485 NA non-coding downstream 136546 6560899 ~ 6563478 (+)
G153626 NA non-coding downstream 677852 7102205 ~ 7157875 (+)
G153687 NA non-coding downstream 872781 7297134 ~ 7297381 (+)
G153689 NA non-coding downstream 873801 7298154 ~ 7298512 (+)
G153702 NA non-coding downstream 936031 7360384 ~ 7361317 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other upstream 1158842 5214813 ~ 5241776 (+)
AMCG00005546 acaca,LOC107691719 other upstream 1837598 4560213 ~ 4563020 (+)
AMCG00005538 NA other upstream 2095462 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 3129774 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 3551010 2845217 ~ 2849608 (+)
AMCG00005647 NA other downstream 10168 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 63365 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 184290 6608643 ~ 6662480 (+)
G153675 NA other downstream 836324 7260677 ~ 7265971 (+)
AMCG00005694 NA other downstream 882705 7307058 ~ 7334571 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location