AMCG00005667


Basic Information

Item Value
gene id AMCG00005667
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6487718 ~ 6488782 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005667
ATGTATTTTGTGCAGCTCCTGGTACAAAAGGGAGCCAACGTTCATGCCAGGGCCTGCGGGAAGTTCTTCCAGCTCAACAAAGGGCCTGGCTTCTACTTTGGTGAGCTCCCCTTGTCCCTCGCCGCCTGCACCAACCAGCTGGACATAGTGTCCTTCCTGATGGACAACCCCCATCAGAAGGTAAACGTCATGGAGAAAGACTCTATGGGCAACACGGTGCTGCACGCGCTTGTCGTCGTGGCTGACAACACTCCGGAGAACACCAAGTTTGTCACCAGGATGTACGACGAGATCCTCATCAGGGCCGCCAAGCTGCACCCCGAGATCAAACTGGAGAACAGCACCAACAACAAAGGACTGACGCCCCTGAAGCTAGCAGCCAGGACTGGCAAAATCGGGCTGTTCCAGCACATGGTGAACCGCGAGATGGAGGACAGACAATGCCGGCACCTGTCCCGGAGGTTCACGGAGTGGGTGTACGGTCCCGTGCACTCGTCTCTCTTCGACCTGTCCTCGCTGGACTCCTTCGAGAAGAACTCTGTGATGGAGATCATTGTCTTCGGCAGTTCGGTCCCTGTAAGACCACAGCGCTTTGCATTCTGCCTTTTGCCACAACCCTGCACTGCAGTCAAGTGCTGGAGGGAGGGCTGGGACAGTGTTCCCCCAGTGATGAAATGTGATCTCAGGCTACAGCtgaatactattttattggatttagtattttcttttcatcaataa
>TU193227
ttttgttgtttttctacacACCGTTGTGAACGTTGGGTATATTGCATTATTGCTATACTGCCACAGTATCAGCATTGAACAGCATGCTACCTACGCTGATAGAACCATGCtgataataagtaataataataatatacaattatgcaTTGGTTTAGGTCAGTCAGCCCTTCATGTTGCCATTGAGAGGAGAAGCATGTATTTTGTGCAGCTCCTGGTACAAAAGGGAGCCAACGTTCATGCCAGGGCCTGCGGGAAGTTCTTCCAGCTCAACAAAGGGCCTGGCTTCTACTTTGGTGAGCTCCCCTTGTCCCTCGCCGCCTGCACCAACCAGCTGGACATAGTGTCCTTCCTGATGGACAACCCCCATCAGAAGGTAAACGTCATGGAGAAAGACTCTATGGGCAACACGGTGCTGCACGCGCTTGTCGTCGTGGCTGACAACACTCCGGAGAACACCAAGTTTGTCACCAGGATGTACGACGAGATCCTCATCAGGGCCGCCAAGCTGCACCCCGAGATCAAACTGGAGAACAGCACCAACAACAAAGGACTGACGCCCCTGAAGCTAGCAGCCAGGACTGGCAAAATCGGGCTGTTCCAGCACATGGTGAACCGCGAGATGGAGGACAGACAATGCCGGCACCTGTCCCGGAGGTTCACGGAGTGGGTGTACGGTCCCGTGCACTCGTCTCTCTTCGACCTGTCCTCGCTGGACTCCTTCGAGAAGAACTCTGTGATGGAGATCATTGTCTTCGGCAGTTCGGTCCCT

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005667 False 738 mRNA 0.54 2 6487911 6488782
TU193227 True 769 TUCP 0.52 2 6487718 6488620

Neighbor

gene id symbol gene type direction distance location
AMCG00005648 fam222b coding upstream 10895 6467610 ~ 6476823 (+)
AMCG00005649 flot2,LOC103133852 coding upstream 63365 6400618 ~ 6424353 (+)
AMCG00005650 dhrs11,LOC107562199 coding upstream 99225 6376102 ~ 6388493 (+)
AMCG00005637 NA coding upstream 130070 6355933 ~ 6357648 (+)
AMCG00005635 ggnbp2 coding upstream 133404 6344912 ~ 6354314 (+)
AMCG00005666 emc6,LOC107553592,LOC107552561 coding downstream 19503 6508285 ~ 6508617 (+)
AMCG00005670 NA coding downstream 32070 6520852 ~ 6527544 (+)
AMCG00005668 NA coding downstream 62922 6551704 ~ 6560667 (+)
AMCG00005669 LOC107676655,LOC107718355,LOC107680877,LOC107553589 coding downstream 79305 6568087 ~ 6570099 (+)
AMCG00005661 ncor1 coding downstream 114203 6602985 ~ 6618586 (+)
G153390 NA non-coding upstream 93990 6333252 ~ 6393728 (+)
G153381 NA non-coding upstream 156347 6282988 ~ 6331371 (+)
G153348 LOC107090330,LOC102220786 non-coding upstream 253671 6232159 ~ 6234047 (+)
G153312 NA non-coding upstream 439280 6048130 ~ 6048438 (+)
G153274 NA non-coding upstream 532267 5916835 ~ 5955451 (+)
G153485 NA non-coding downstream 72117 6560899 ~ 6563478 (+)
G153626 NA non-coding downstream 613423 7102205 ~ 7157875 (+)
G153687 NA non-coding downstream 808352 7297134 ~ 7297381 (+)
G153689 NA non-coding downstream 809372 7298154 ~ 7298512 (+)
G153702 NA non-coding downstream 871602 7360384 ~ 7361317 (+)
AMCG00005647 NA other upstream 50640 6434521 ~ 6437078 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other upstream 1245942 5214813 ~ 5241776 (+)
AMCG00005546 acaca,LOC107691719 other upstream 1924698 4560213 ~ 4563020 (+)
AMCG00005538 NA other upstream 2182562 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 3216874 3266374 ~ 3270844 (+)
AMCG00005663 NA other downstream 119861 6608643 ~ 6662480 (+)
G153675 NA other downstream 771895 7260677 ~ 7265971 (+)
AMCG00005694 NA other downstream 818276 7307058 ~ 7334571 (+)
AMCG00005660 LOC106603524 other downstream 1260401 7749183 ~ 7787871 (+)
G153815 NA other downstream 1725122 8213904 ~ 8230590 (+)

Expression


Co-expression Network