AMCG00005742


Basic Information

Item Value
gene id AMCG00005742
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8897277 ~ 8904084 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005742
atcccattggcggagcagcgcagcaCTGCGGACGTCAGCGCCACAAGGACGTGATCACTGTACCACCCGAGTGctttcacttttatttcaatTCGAGCTCAGATATATtagaaaagaaagtgaaagtgaaagctAACTTAATGCCCGTATTTAATGGAGGCTGTAGACGCAGACCCGTCGTTCCTGaagatatttattataaaatagcACTATGATAACCTCAGCGGTACGACTGCTGCTGCTCATGCTCATGTCCTCGGACAGCGGCTGGGTCTGGGGCGGCGCTGAGGGGGTGACGCTGGGCGAGGCGGGGTGGCTGGACTGTGAGCTGGTGGAGGAGCGGATCCATACGGGCGTCAGCGGGGGACCCGAGACCGAGTACGTCCGCAGGAAGGCTGCCCTGCTGCTGAGCAACACTGAGAGGGACGCCGACCACAGACTGAGGGACGCCCAGAAAGAGGGCATCATCGCTTTCCTGGTCACAGcctCCACAGTGGATGTTGCCCGCTTCGTGGAGGGCAGCACGGAGCAGCTGCAGTGCGAGATCAAGAGGTACTCCACCGCAGGCATCCAAGTGGACTGGCCAGGGAACAGGGGTGCCAAAGCAGGTGGCGAGGATGCCTGGTTCTCCTGCACCATCCGACACAGTGCCGAGGAGTTCATTGTCACGGCCTTCCTCCGCCAGAACCCCCCCTCCGGGACCCCCGTGGCGCAGCAAGACTACAACCAGTTCCCCCCCATCACAGACGGAGATGCTGTGCACATGTCAGtggcGATGGTGGTTCTGACCCGGACGCCCACGGTGGACTCTGCCCTCCTGCGGGACGTGCGTCTGGACTGCGGGTTTGCGGTGGACCACACCCGGCCCGAGGTGACGGTGGAGTGGCGCGTGCAGCACCGCGGGGAGCGCCTCAAGCTCTTCAGCTACGCCAGCCGCACCGGCCGGCCCGAGACACAGACCCCGGGGGCCGCTGTGTCCCTGAAGGACATCCAGCGGGGGAACGCCTCGCTGCGCCTGACGGGCGTGCAGGTGAAGAGCGAGGGCACATACGTGTGCTCCGTGTACGTGCCACCACTGTATGGCAGCCACGACGTCCAGCTGCGCATACTGGAGAGCCCACGCGTGTCGCTCAACGTGGGGACCACCCTGGAGCTGCAGGAGGAGGCCGACCAGAAGGTGGTGTGTGAGATCACGGGCTACTACCCCCTGGACGTGGAGGTGGAGTGGCTGCGGGAGACGTCGGGGGTCCGCATGTTGCCCACCCTGCTGAAGAACATCCTATACACCAGCCACCGGCACAACGCCGACGGCACCTTCAGCATCTCCGCCTTCTTCCTGCTGCGCGCCAACCTCCCCGACCACGGCAGCCGCTACACCTGCCGTGTGTCCCACGTGTCCCTGCGCACGCCCATCCGCAAGAGCTTCACCCTGTCCGTGTCAGAGAACACGAAGCTGGGCTCCGTCCTCTGGGGACTGTTCCTCTGTGTGTTGATCGCTCTGCTGGCTCTGATCTTGATAGTGCTGCTGCGCTCCCTGCACAAAGCATGGTCAGAAGCAAAGAAGAGGAAGCCGTACTGAGCAGGACGGCGCTGTGGGACCCTGGGTTGTGCTCAGACAAAGGACAGGCCCCAGGTCAGCCCCCATTGCCATGGCAGGTGTTAAGCTGCTGTTTCCATGCCCTGTCCTGCTCATATAAGGATTAAGGCCCATAGATCACTACAGTTTACAGATGTGGACAGCTGTTGGGATGAAGATTACACTGATGACAGGGACACTGGGAAATCTTACTGAAAAAGGACAAATTGGATTAATTTCAGCcccatgttatttttttttaccacaacAGTTATAtgtatcaccatcaccatcagcccataacgatccactgctggatccccaagatgtttccaactgctttgatctacagcttctcttttccatgtcatgcctgaaaagctttatttaatcttcccattttTTCTGTGGTCGTCTTTCTTCATCTcggtatccattcaataacttccttttccatatttgatctgttcttcttgccatGAGTCCTGCCCATtgccatttcaacattttaactctttcaatgatgacacattttggtttgttctcagatccatatTTTGCTTTCCCGATCTCCTCGTTATCCCAAGCTTaaatctttccatgctccttcgTGTCGCCCGCACTGCTCATATGCACTGATCAGACACttcacttttctcttcaggcagacttcctttcaacagtgtgcaGTTTCTTAGAAAATGATTATAATATAGATTCAAACAAGGAGTCATAAaagattgtaattaaaatggctTGAAATTAAACATCTTGGAATGTATAAATAGgttggaaactttttttttggaaggAGAGGTGGAGAAAGATGCTGttgtaaaaattaaatctgtaaataaaaaatcattttttcctGCA

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko05164 Influenza A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005742 True 2452 mRNA 0.54 8 8897277 8904084

Neighbor

gene id symbol gene type direction distance location
AMCG00005788 NA coding upstream 13476 8876410 ~ 8883801 (+)
AMCG00005789 NA coding upstream 24152 8869909 ~ 8873125 (+)
AMCG00005790 NA coding upstream 33054 8862478 ~ 8864223 (+)
AMCG00005791 NA coding upstream 34905 8854382 ~ 8862372 (+)
AMCG00005755 NA coding upstream 120405 8772389 ~ 8776872 (+)
AMCG00005746 NA coding downstream 106100 9010184 ~ 9016738 (+)
AMCG00005745 NA coding downstream 131204 9035288 ~ 9039062 (+)
AMCG00005749 ncbp3 coding downstream 179068 9083152 ~ 9092563 (+)
AMCG00005751 blmh coding downstream 211387 9115471 ~ 9128845 (+)
AMCG00005752 NA coding downstream 226953 9131037 ~ 9139661 (+)
G154025 NA non-coding upstream 91973 8781989 ~ 8805304 (+)
G154030 NA non-coding upstream 100853 8793827 ~ 8796424 (+)
G153955 NA non-coding upstream 167122 8729803 ~ 8730155 (+)
G153859 NA non-coding upstream 545528 8345678 ~ 8351749 (+)
G153816 NA non-coding upstream 619203 8251301 ~ 8278074 (+)
G154091 NA non-coding downstream 117866 9021950 ~ 9071747 (+)
G154143 NA non-coding downstream 189825 9093909 ~ 9094670 (+)
G154147 NA non-coding downstream 196345 9100429 ~ 9108370 (+)
G154175 NA non-coding downstream 288212 9192296 ~ 9194187 (+)
G154252 NA non-coding downstream 536409 9440493 ~ 9441381 (+)
AMCG00005787 NA other upstream 43177 8828578 ~ 8854100 (+)
AMCG00005720 NA other upstream 390180 8498502 ~ 8507097 (+)
G153815 NA other upstream 666687 8213904 ~ 8230590 (+)
AMCG00005660 LOC106603524 other upstream 1109406 7749183 ~ 7787871 (+)
AMCG00005694 NA other upstream 1562706 7307058 ~ 7334571 (+)
G154251 NA other downstream 531816 9435900 ~ 9438269 (+)
G154283 NA other downstream 683718 9587802 ~ 9589798 (+)
G154330 NA other downstream 977298 9881382 ~ 9883955 (+)
AMCG00005802 NA other downstream 1161076 10065160 ~ 10089769 (+)
AMCG00005929 NA other downstream 1363189 10267273 ~ 10356244 (+)

Expression


Co-expression Network