AMCG00005750


Basic Information

Item Value
gene id AMCG00005750
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9165033 ~ 9180805 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005750
ATGGCCAGAGTAACAGGgaggcAGGTGTTACAGGTGCACCGCTCACCAGGGCTGCATGATCTGGGTCCAGTGAGCTGGCAGTTGGCGCTCTGTCTGCTCCTCATCTTTACCGTCGTCTACTTCAGCATCTGGAAAGGGCTGGAGGGGGTGATCACTGCAGTGCTGGATGAGTTTCCCCAGGTCTTGGCCAAGCGCAGGGAGTGGTTTGTCCTGGGCCTGGTCTGCGTCTGCTACCTAGGCGCGCTCTCCACTCTGACCTGTGGTGGGGCCTTCGTGGTGAAGCTGTTTGAGGAGTACGCCACCGGGCCCGCCGTCATCACCGTGGTCTTCCTGGAGGTCATCGCAGTCTCCTGGTTCTATGgtATGTCCCGGTTCTGCAGCAACGTGGAGATGATGCTGGGCTTCAAGCCGGGCTGGTATTGGCGGATCTGCTGGTTCATCATTTGCAGCTTCTTGTTCTTCCCCCCGGAGCTGAAGATGTTTGACTATGCCTACCCCCCCTGGACCACAGCCCTGGGCTACTGCATCGGGGTCTCCTCCTTCATCTGTGTGCCTGCCTACATGGTGTACCACCTAATCACCATTCCCGGCACCTTCAAGCAGAGGCTTCTAAAGAGCATCACCCCCGAGCCCAGTAGCGGCGGGGGACACAGTGAGATCATCACCAATGCCGTGTGAGGacgtgggggcgggggggtggtggAGAGCCGCCAACCCCCATGGCAGAACTGTCACCGCCCACTCCCTCCCCCACACCGCCCTCCCTGTTCAACAGAGCAGCGGGGGGCGAAGGGGTGGTGATGGGAGACTCCCTTGCAATGTGCAAACCCACAGACCTGtcccagcagagagagagagtctgattttaatatgtaactattatattcttattattattattcttattttctctcACGTTGCTGGCCTGACGGGGCTGTTGGAAGCTCTCGCAGCGAACAACACTGTTTAGCTCCTCTCTCGATGTCTCTGCACTCTCATTCCTCCTGGAATAGACACACATTCCTGCAGCACAACCTCAATATAGAGATCTATAGACTTCCAAAGACAgggtgagagagaaggagaaatgCTGTAATGAGACTGAagtgttgggggagggggagcttatatacgtgtgtgtctgtctgactgtatatttgtaggtgtgtgtgtatacatgcatacaggtgtgtgtgtgtgtgtacagtgtaagTCTATACAGTGATAGTTGTTGGGGACTCTGTGCatggtgtcagtgtgtcaggtgTCACATGGGGCTCGGCGGACTGTTCCGTTGGAGGGTACACAAGTGAGACAAGTTCATCTATTGGcctattattacttgatttctcagcagacacccttatccaggttgacttacaattgttacaatatatcacattattttttacatttacccatttatacagctgggcatttactggagcaatctaggtaaagtactttgctcaagggtacaatagcAGTGTCCCAACCTGGGATCGAACCCACAcccctgtgctccagagtccagagagCCTATATCTTAATTATTTGATATAGTGACCTGGTAGACTAAAACCCGTTCTCCGTTCTGAGGCGACCcagtcaattaattaatactgtCAAACGAATACAATATTGACGCACAAGCGGTGTCACTCTGTGTACTGTGTTGTGAAGTGTTGTGTTTCTCTTCTGGCAGGAACACCGATTAACGTAGGTTGTGACGTTTCTACGCATGTTTTTGATCTACAAAATTCCAATAAGAATCCGTTTTGGCCTTACGATAAATATACTCAGTATTGAAACGTTGAAGTTGTCGAGGCATTGCAAGTCCGTGTTGATTAACTGTATAATAGGACTGAAACGAGAAACGACACGAGTCTCAGTGATGTAGTGAACTGTATACTTTAAAggtattgtgtgtattttttacgCGTTCTTTAATACGTATGGAGTGTTTTTCGTAGTACAACGTTACAAATTTGCTATTTTTGGACTGTAGATCCACTGAAATGGGACCAGAccgattttattttaattttcagaacCATTACCTTGGGAAGTTactgtcttgtttttctctgttgtaATTGAAGTCCTGTAAATATCTGAAGCAGGTTTTATGATATACAGTAGGAAGAAGTTCGGTTTGATATCTTATGAATATCTTTGCGGTAACTTAAGTTTTTAATACCCTGGCAGAGACAGACATCTTAATAGGACAGTAGCCTACttgtaatgtaatttcaatgtaagctttgtatttatttttctgtattattattattaccgtatagtaaatattttatatttttatgatctCAGACTTTGTATATCTCAAAATCAATGGAGACCAAGGGCCTTAACGACTGCTTGAAGTGCATTCTTACATTGTTGCAGTTTTTATGACTTTTTTCAAAGTTAATGCTTTTTCAAGTTCCACCtttcaaacattaaattaaaagttaatttcaCAGAATTACTTTGCAAAAGATATCTGGTATGTAATGTGGTGACGTAATGCGGGGTGACGTGTACCATTGGCAATGTCGCAACACAAAATGTTCtaaaaagcagaataaaaaagTACTGCTGTAGTTATGTTTAATTAGGACACCCTTCGCTTGAGGAATCATCAAATCTCACGAGTCACTTATTCTGCTTAGTTTCATATCTTAGTGCCCTTAAACGGTTAAAGTCTGATTTTCACTCCTGGCTCAGGTGGACACAGTTATATGAATATTTTAGACACTCAGCCAAAGACTGGAGGACGCTGGTCATATAGAGTCACGCTATTAGACTCTCCAGGAGCAGGAGTGAAGATGCCAgccctatatatatatgaattgttCTCATAACGTCCTCCTCAATGGCCATTTCAATGCTTTAAGAATATATGTGCATTAATTGCTACCAAAAAACACACCCAGAAAACAGCCCTTTAAATTATGAATGGAAGCCCTGGGTTCTGAGAGCGCTGTGCGGatgtttgtgtgcgtttgtgttttcAGAGATGCAGCGATTAAATTTTAATGCTGATGGCACCACAGCCCTGGGGGGGtgaatagataaatacatggatacataatcaaataaaaacaagacttGCAACAAGTGAAGTAAGTGCTAGTTAATGCGGTGCTTTTGAAATCTGCACCAGGGGGACTTTGCCAGCTTCTCCCTTTCTGAGACCAGAGCCGTCCtggtacaattaaaaaataaagcgaTGCTGCAGAAAAACATAGTTAGTGTCTAAATAATTCAGCCCCAGAGCAAATTCACACGCCACCACACGTCTCTAATTACACACAGGGTGCGTATCAGCCCATTTGGAGATGTGATCatgttaattgttattttatcatCACGCCCCGGTGTGTTTCAGAGTTCTGCACCCAGCACGTTATTGGAGCGTTTCTGTACATAAGGGGCAGGTGTCTTTAACAGGAGCTCGGGTCGAGCTGTTGAAAGGACAGTCAGTTTGCTCTCCGTGCTCCTGTTAACAGCCAGAGAataggagggtgggggggcccTACAGtgattaacatttcatttgctGCCCTTGTTTGTGTAGTGTTTGCTGCGTGGAGGTTGTTCCGGGGTTTTTACACTGTAAGAGCACAGAGCGTGTGTTTGCAGGTGCCATGAATGAGATTCCCATTGTGCAGCAGTTTGAGTCGTGGCAGGTTTTGTTAGCTGTGAGCGTCAGTACAGAGCAGTCCAACTCTGGTCCTGGACAGCTGCCTGTGCTGGTTCCCATTGCCTTCGAGCTTCAATTTCAACTGAACCAGTGGTTGCTTTGGTTTGGTTGAAACTTAACACAGTCTTTTACAAAACAACTTTCAGATTGTGGCTCTTTGCATCCAGAGGCCATTGCTCTAGTCCTGTGTTTCTCAACCCTGGATCTCGACAGACTAGGGGtcacatgtatttgcaaatgctCTTCGAAAACTTTTAAGTCAACCGCAATTGTAGTAGAAGGCAACTAGGGTTTATTTTGGCCCAGACTGGCTTGACTGAGGGAACGAGGACCTGGCCACGAGGATGAGGCCATCAGAACCCCCCACCAGGTGGAACAAGCCaaaggaggaagggagggagggagggaaggagggagggaaagcACTGAATGCTGGGAAAGCATGTTTCTCGCCCGATATTTATGCGGAGTAAGGCGGAAGTCCCAAACCTTGTTGAAAACATTGTGTTCACTTCTATTCATTCAGCCAATCCATCACTCCTCGACCCTCCCCGAGCTGTCGCCTTCAAAGGAGGTGAAGATCAGGAATGGGGGGGAGGTGGGCTGGATTGAATTGATTGGAAGAGCGGAGTGATGAAAGGGGCTCACCTTAATCAATTGGGGGGACATGATCTTAATGTGTTTGAAGGACATCGCATATGCATGTGACCCCCTGCCAGCCCTGATTTCTGTTCCAGCCGTGCTCTAAACTCCTCACCTGACCACCTGACCTCACAATACTGCTTCAACTGGACCCTTTTCATTAACGCCTGCTGCGAAAAAGTTGGAATCGTTCCCTTGACTCTTCTCAGTAGCAGAGACCTCGGCAGCGACAGTAAACAGAAGGCACAGGGCCGCTCCAGGACTGGGCTGAGTGTTGTGTACAGTGGAATAGTTTATGAGGTGCTGGATAATTAACGCTAGCCTCTCTAGATCCACAGAACAGGGGGAGCTGAAGCAATACTTACAAGTGTGATGTGAATGGAGATTTCTCCAGCGTGAAGGGAACAGCCTGCAGCTGTGAAAACTCACATCAGCCGGCTTACTGTGCAGTGGGAGTCGCATTTCTCCCTCCTGGTTTGGTATGTGCAGCTAAAAGAGTAATGTCCCCCCCACAAAAGAAAGAGAGGtgaaatccccccccaccccgtcaattcagtctgtctgtgtgtgaagagCATCCCTGTATATTACATGCTGTACTGTGTGTACTCTGTGCTGCCCCATCAGCGTTGTGTTCTCTGTCGTCTCCACGCTTGAAAACCGACGTGTCCTCGTACGTCTGTCTGTCATTGATGATCTATGGAAATCTCttactgtattgaaaaatatatacgtGTATAAAGAAAGATAATACTGAATAAATAAGGAATCTATGACCAAAAAGaa

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0016020 membrane cellular_component
GO:0015293 symporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005750 True 5134 mRNA 0.46 7 9165033 9180805

Neighbor

gene id symbol gene type direction distance location
AMCG00005753 NA coding upstream 817 9159231 ~ 9164216 (+)
AMCG00005752 NA coding upstream 25372 9131037 ~ 9139661 (+)
AMCG00005751 blmh coding upstream 36188 9115471 ~ 9128845 (+)
AMCG00005749 ncbp3 coding upstream 72470 9083152 ~ 9092563 (+)
AMCG00005745 NA coding upstream 125971 9035288 ~ 9039062 (+)
AMCG00005774 ssh2 coding downstream 59829 9240634 ~ 9251830 (+)
AMCG00005775 NA coding downstream 71549 9252354 ~ 9269236 (+)
AMCG00005784 NA coding downstream 118780 9299585 ~ 9330590 (+)
AMCG00005783 NA coding downstream 165638 9346443 ~ 9349421 (+)
AMCG00005764 NA coding downstream 216320 9397125 ~ 9406873 (+)
G154147 NA non-coding upstream 56663 9100429 ~ 9108370 (+)
G154143 NA non-coding upstream 70363 9093909 ~ 9094670 (+)
G154091 NA non-coding upstream 93286 9021950 ~ 9071747 (+)
G154025 NA non-coding upstream 359729 8781989 ~ 8805304 (+)
G154175 NA non-coding downstream 11491 9192296 ~ 9194187 (+)
G154252 NA non-coding downstream 259688 9440493 ~ 9441381 (+)
G154343 NA non-coding downstream 724967 9905772 ~ 9944143 (+)
G154388 NA non-coding downstream 897502 10078307 ~ 10079436 (+)
G154447 NA non-coding downstream 1104709 10285514 ~ 10332094 (+)
AMCG00005787 NA other upstream 310933 8828578 ~ 8854100 (+)
AMCG00005720 NA other upstream 657936 8498502 ~ 8507097 (+)
G153815 NA other upstream 934443 8213904 ~ 8230590 (+)
AMCG00005660 LOC106603524 other upstream 1377162 7749183 ~ 7787871 (+)
AMCG00005694 NA other upstream 1830462 7307058 ~ 7334571 (+)
G154251 NA other downstream 255095 9435900 ~ 9438269 (+)
G154283 NA other downstream 406997 9587802 ~ 9589798 (+)
G154330 NA other downstream 700577 9881382 ~ 9883955 (+)
AMCG00005802 NA other downstream 884355 10065160 ~ 10089769 (+)
AMCG00005929 NA other downstream 1086468 10267273 ~ 10356244 (+)

Expression


Co-expression Network