AMCG00005798 (pitpnm3,LOC102785427)


Basic Information

Item Value
gene id AMCG00005798
gene name pitpnm3,LOC102785427
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10043818 ~ 10052809 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005798
ATGGTGCCTGCAGACGATCATAATATCTGGTGTGGGAGTCTGAACCCCTTCCCCCTGGCCTTCGGTGACGCTATCCACAGCAATCCATTAGTTTTCCTGGAGACAGGATCCAGCCCCCAGCCGCCTCAGCCTGTTTCCCCTGAGCTGGGGGGCCGTGGTAGTGGCCGGGGGGGTGGCTCCGGCCGGAGGGGCAGCCTGACCAGCATTGACAGTGAGACCTCAGGCTGCTCCCTCAGTCGGCTGGGCAACACCATTGCCAACGTCTCCAGTTCCTGGTGGGGGACAAAGCGGCTCGACTACGCCCTCTACTGTCCAGATGTCCTCACTGCGTTCCCCACGGTGGCGCTGCCCCATCTCTTCCACGCCAGTTACTGGGAGTCCACCGACGTTGTAGCCTTCGTGCTCAGACAGGTGATGCGCTGTGATTCCCTGAAAGCCAAGGAAGCAGATGGCTCCGACTCtgcccccttctctccctccagtCCCCGGGAGAAGTGGCTCCGGCGCCGCACTCACGTCAAACTGCGGAATGTCACTGCCAATCACCGAGTCAGTGACATCATCGCCACGGAGGACGGCCCCCAGACCCTGGTTGGCCGGTTTATGTATGGACCTCTGGACATGGTGACGCTCACCGGAGAAAAGGTGGATATCTTCCTGATGAGTCAACCGGCATCAGGCCGCTGGGTGCACTTCGACACTGAGGTCACAAACAGCAACGGGCGCATCTGCTACACTGTGCCCGATGGCAAGCGGCTGGCTGTGGGCGTCTACCCCATCAAGATGGTCGTCAAGGGCGACCAGACGAGCGCAGAGGCCTTCCTGACGGTGCTGCCGCGGGGGATGGAGTGTGTGGTGTTTAGCATCGACGGCTCCTTCGCCGCCAGCGTCTCCATCATGGGCAGCGACCCCAAAGTGCGCCCGGGGGCTGTGGATGTCGTCAGGCACTGGCAGGACCTGGGCTACCTCATAATCTACATCACGGGCCGACCGGACATGCAGAAGCAGCGCGTGGTCTCCTGGCTCTCGCAGCACAACTTCCCCCAGGGCATGATCTTCTTCTCCGAGGGGCTGGTGCACGACCCCCTGCGCCAGAAGACCATCTTCCTGCGCAACCTGGTCCAAGAGtgtcacATCAAGATCAGTGCGGCCTACGGCTCCATGAAGGACATCTCGGTGTACAACATGCTGGGCCTTGGCCCGACACAGATCTATATTGTGGGCCGACCGTCCAAGAAATACCAGACCCAGTGCCAGTTCCTGAGTGAGGGCTACGCCGCCCACCTGTCCACACTGGAGTTTGGACACCGTGCCCGGCCCAAGAAAGGCTCGGCCCGCATGGTCCTGCGCAAGGGCAGCTTCGGCCTGTCTGCGCAGCCCGACTTCCTGCGCAAACGCACACACCTGCGCCGCACCATGTCCGTGCAGCAGCCTGACCCGCCCCCCACTCCCAACCCCAAGCCTGAGCGTGCGCAGAGCCAGCCCGAGTCCGATAAGGACCACGAGCGGCAGCCTGGCAGTGGGCTGTGGGTGCGGGGGTCCATGCACCGCGGGGACACCACCCCCTGA

Function

symbol description
pitpnm3 Predicted to enable phospholipase activity. Acts upstream of or within cerebellum vasculature development. Predicted to be active in COPII-coated ER to Golgi transport vesicle. Used to study arteriovenous malformations of the brain. Human ortholog(s) of this gene implicated in cone-rod dystrophy 5. Orthologous to human PITPNM3 (PITPNM family member 3).

NR:

description
PREDICTED: membrane-associated phosphatidylinositol transfer protein 3 isoform X2

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K24069 PITPNM; membrane-associated phosphatidylinositol transfer protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005798 True 1569 mRNA 0.63 10 10043818 10052809

Neighbor

gene id symbol gene type direction distance location
AMCG00005799 NA coding upstream 10996 10020967 ~ 10032822 (+)
AMCG00005806 NA coding upstream 75671 9946752 ~ 9968147 (+)
AMCG00005807 med31,LOC107699947,LOC107599285,LOC107684212 coding upstream 100494 9941462 ~ 9943324 (+)
AMCG00005808 slc13a5,LOC106612936,LOC106581085 coding upstream 122748 9907846 ~ 9921070 (+)
AMCG00005768 NA coding upstream 175230 9860919 ~ 9868588 (+)
AMCG00005934 NA coding downstream 79319 10132128 ~ 10136716 (+)
AMCG00005928 NA coding downstream 154511 10207320 ~ 10218325 (+)
AMCG00005927 NA coding downstream 207840 10260649 ~ 10261465 (+)
AMCG00005820 NA coding downstream 359716 10412525 ~ 10416137 (+)
AMCG00005819 NA coding downstream 370300 10423109 ~ 10428966 (+)
G154343 NA non-coding upstream 99675 9905772 ~ 9944143 (+)
G154252 NA non-coding upstream 602437 9440493 ~ 9441381 (+)
G154175 NA non-coding upstream 849631 9192296 ~ 9194187 (+)
G154147 NA non-coding upstream 935448 9100429 ~ 9108370 (+)
G154143 NA non-coding upstream 949148 9093909 ~ 9094670 (+)
G154388 NA non-coding downstream 25498 10078307 ~ 10079436 (+)
G154447 NA non-coding downstream 232705 10285514 ~ 10332094 (+)
G154451 NA non-coding downstream 250148 10302957 ~ 10303497 (+)
G154473 NA non-coding downstream 367097 10419906 ~ 10489854 (+)
G154505 NA non-coding downstream 471158 10523967 ~ 10526052 (+)
G154330 NA other upstream 159863 9881382 ~ 9883955 (+)
G154283 NA other upstream 454020 9587802 ~ 9589798 (+)
G154251 NA other upstream 605549 9435900 ~ 9438269 (+)
AMCG00005787 NA other upstream 1189718 8828578 ~ 8854100 (+)
AMCG00005720 NA other upstream 1536721 8498502 ~ 8507097 (+)
AMCG00005802 NA other downstream 12351 10065160 ~ 10089769 (+)
AMCG00005929 NA other downstream 214464 10267273 ~ 10356244 (+)
AMCG00005851 NA other downstream 245080 10297889 ~ 10304909 (+)
AMCG00005821 NA other downstream 409728 10462537 ~ 10469406 (+)
G154486 NA other downstream 417734 10470543 ~ 10471631 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_01272628_01318779 PITPNM3 coding CI01000072 null 1272530 ~ 1319079 (+)