AMCG00005808 (slc13a5,LOC106612936,LOC106581085)


Basic Information

Item Value
gene id AMCG00005808
gene name slc13a5,LOC106612936,LOC106581085
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9907846 ~ 9921070 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005808
ATGGGCAGGGGGCCTGGCTATTATGTGTACTTGGCAGCGGCTGAGAAGGGCCCCTTGTTCTGCCGAGGGGTGAATACAATGCCCCTCACCTTCCCCTCCCcagcctccctgcctccctgcctccccCAGTCCTCCCCTGCAGGGCTCGCAGAGAAGATGGCACCGTTATGGAAAGTCCTTTGGAAGCAGAGGAATGCGTTTGTGCTCTTTTTCACCCCGTTTCTCCTCCTGCCTCTACCTCTTGTTGTCCAAACAAAGGAGGCGAGCTGTGCTTACGTGATCATCCTGATGGCGGTGTACTGGTGTATGGAGACCATGCCCCTGGCTGTGACCGCCCTGCTGCCCGCTCTGCTCTTCCCCATGTTTGGCATCCTGCAGTCCAAAGAGGTGTGCATGCAGTACCTGAAGGACACCAATATGCTGTTTGTGGGCGGTCTGATGGTGGCCGTGGCTGTGGAGCACTGGAACCTGCACAAGCGCATCGCCCTCAGAGTGCTGCTCATCGTGGGAGTGCGGCCCGCACTACTGATGCTGGGCTTCATGGGTGTGACGGCCTTCCTGTCCATGTGGATCAGTAACACGGCCACCACAGCCATGATGGTGCCCATTGTCCAGGCCGTGCTGGAGCAGCTCAACAGCAACGACGCTGAGATGCCGGAGATCCACAGCGGGGACGACAGCGAAACGCCGACCAAACCCAAAGATGACCAGGTGGTGGTGAATGGGCTGAGTGCGTCGGAGCCCAGTCAGCACGATGAGGCGTTGGAGAGGAGGAAGATGTGCAAAGGCAtgaccttgtgtgtgtgttacgcGGCCAGCATCGGAGGGACGGCCACACTCACTGGCACTGGGCCCAACCTGGTCCTCAAGGGCCAAATGAACCAGCTGTTTCCCGAGAACGGTGATGTCATCAATTTTGCTTCCTGGTTCGGGTTCGCCTTCCCCAACATGATCCTCATGCTGACCATCGCCTGGCTCTGGCTGCAGTTTGTCTTCATGGGATTCAACTTCAGGAAGACGTGGGGCTGTGGGGCGGAGAAGTCGGAGAAGGAGGTGGCAGCATACAACGTCATCAAGGAGGAGCACCGGCTGCTGGGGCCCATGGCGTTCGCCGAGATCAACGTGCTGGTGCTGTTCACCCTGCTCATCGTGCTGTGGTTCACACGCGACCCCGGATTCGTGCCTGGCTGGGCCACTTTCCTGTTCAACAAAGATGCAGAGTACGTGACTGACGCTACGGTCGCCGTCTTCATCGCAGTGCTCCTCTTCGTCATCCCCTCCAAGAAACCGCAGCTCTGCTTCTGGAGGTCTGAGAGCTACCAGACAGagcaccagagcaccagtTCAGCTGCTCCTCTGCTCAGCTGGAAGGTGGTGCAGAAGAAGCTGCCCTGGAACATTGTGCTGCTGCTAGGGGGTGGCTTCGCACTGGCCAAGGGCAGCGAGGAGTCAGGCCTGTCTAAGTGGATAGGGAACCAGATGACTCCCCTGCACACCATCCCACCCTGGGCCATTGCCATCATCCTGTGCCTGCTGATCGCCACCTTCACCGAGTGCACCAGCAACGTCGCTACTGCCACACTCTTCCTGCCCATCCTGGCCTCCATGTCGCAGTCCATTGGTATTAACCCCTTGTACGTGATGGTACCCTGCACACTCAGCGCCTCCTTTGCCTTCATGCTGCCAGTGGCCACCCCTCCCAACGCCATTGTCTTCTCCTACGGCTACCTGAAGGTCTCCGACATGGCGAAAACCGGGATCGTCATGAACATCATCGGCATTGTGTGCATCACCCTTTCCATTAACGGCTGGGGGAGGGCGATGTTCAACCTGGACACCTTCCCTGCCTGGGCCAACACCACCGGGGTGTGA

Function

symbol description
slc13a5 Enables citrate transmembrane transporter activity and organic acid:sodium symporter activity. Involved in carboxylic acid transport and cellular response to lithium ion. Located in cytosol; nucleoplasm; and plasma membrane. Implicated in developmental and epileptic encephalopathy 25.

NR:

description
PREDICTED: solute carrier family 13 member 5-like

GO: NA

KEGG:

id description
K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005808 True 1872 mRNA 0.59 13 9907846 9921070

Neighbor

gene id symbol gene type direction distance location
AMCG00005768 NA coding upstream 39258 9860919 ~ 9868588 (+)
AMCG00005767 LOC103370200 coding upstream 99116 9798997 ~ 9808730 (+)
AMCG00005763 NA coding upstream 480302 9425307 ~ 9427544 (+)
AMCG00005764 NA coding upstream 500973 9397125 ~ 9406873 (+)
AMCG00005783 NA coding upstream 558425 9346443 ~ 9349421 (+)
AMCG00005807 med31,LOC107699947,LOC107599285,LOC107684212 coding downstream 20392 9941462 ~ 9943324 (+)
AMCG00005806 NA coding downstream 25682 9946752 ~ 9968147 (+)
AMCG00005799 NA coding downstream 99897 10020967 ~ 10032822 (+)
AMCG00005798 pitpnm3,LOC102785427 coding downstream 122748 10043818 ~ 10052809 (+)
AMCG00005934 NA coding downstream 211058 10132128 ~ 10136716 (+)
G154252 NA non-coding upstream 466465 9440493 ~ 9441381 (+)
G154175 NA non-coding upstream 713659 9192296 ~ 9194187 (+)
G154147 NA non-coding upstream 799476 9100429 ~ 9108370 (+)
G154143 NA non-coding upstream 813176 9093909 ~ 9094670 (+)
G154091 NA non-coding upstream 836099 9021950 ~ 9071747 (+)
G154388 NA non-coding downstream 157237 10078307 ~ 10079436 (+)
G154447 NA non-coding downstream 364444 10285514 ~ 10332094 (+)
G154451 NA non-coding downstream 381887 10302957 ~ 10303497 (+)
G154473 NA non-coding downstream 498836 10419906 ~ 10489854 (+)
G154505 NA non-coding downstream 602897 10523967 ~ 10526052 (+)
G154330 NA other upstream 23891 9881382 ~ 9883955 (+)
G154283 NA other upstream 318048 9587802 ~ 9589798 (+)
G154251 NA other upstream 469577 9435900 ~ 9438269 (+)
AMCG00005787 NA other upstream 1053746 8828578 ~ 8854100 (+)
AMCG00005720 NA other upstream 1400749 8498502 ~ 8507097 (+)
AMCG00005802 NA other downstream 144090 10065160 ~ 10089769 (+)
AMCG00005929 NA other downstream 346203 10267273 ~ 10356244 (+)
AMCG00005851 NA other downstream 376819 10297889 ~ 10304909 (+)
AMCG00005821 NA other downstream 541467 10462537 ~ 10469406 (+)
G154486 NA other downstream 549473 10470543 ~ 10471631 (+)

Expression


Co-expression Network