AMCG00005817 (cactin,LOC106600017)


Basic Information

Item Value
gene id AMCG00005817
gene name cactin,LOC106600017
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10431563 ~ 10436502 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005817
CCCACATTGACGAGCTCTGTTCGATATGGCATCGAAAATGCGCCGCAGGTCCCGTTCGGGGTCGCGGACCTGGGCTCGGGAGCGATACCCGTCCAGCCGCTCCTCGGAGAGGAAGAGGGGCCGGAGTCGGTCCGGCTCCGGGCGGCGTGACGAAGGTCCGAGTTCGGGGGTGGGGGCTGCGAGGCGGACTCGGTCTGGGTCCGAAAGATGCAGCAGCAGGAGTAGCTCCAGATCGAGGTCCAGGTCCAGGTCTCCACAGTACCGACCCGCTTCCAGAAGCGGATCTGCCAACAGCGATGGCAGTAAAGACAGCTGTGGCTCAGAAGCGAGAGGGATAAAGACCAAACCAACAAACAGAGGAGAGGATAAAACTGtcgaaaagaaaaagaagaaaaagaaaaagaagggaGGCAGGCgaagggagagcaggagcccctCGTCCTCTGGGTCGAgtgcagagagggggagacgAGGGGTggacagcagagagagggagaggaggaagagggatggagagagccgggagaggaagaggaagagggatgGAGAAaacagggagaggaagagggatggagagagcagagagagggaaaggaacAGGGATGGAGAGAACAGGAAAAGGTatggagacagggagaggaggagggatggagaaagcagggacagggagaggaggagggatggagagagcagtgagagggagagagaggaaaggaggcCGGGACAGaggagtgtagagagagagagtcatagcagcagcagcagcgagagggagagagaaagggggaggagagagatgcAGAGCAGCAGGGAGTCGAAAAGAGAGAACGAGAGGAGCAGAATGAGGAGCAGTGACCGGGATAGAGAACGCGACAGTACCAGCAGGGAGAGGAGAAAccgggagagagggaagggtagtagagaaagagagagagacagggggagagaggTGGAAAGGCCAAGCAGGGACAGAAGAAGCCGGGTGAAAGAGATGAGTAGGGAGAGGGAGCAAGGGGCGCTCGGCTCTCCTGCAAcctgtctctctcgctcgctctcgcACTCCTCGGTCTCCTCgctctcttctccctccccgGAGCGCAGGAGGGGACTGTCAcctggggaggaggaggaggaggacggggTGGTGGCAGGGGGTCCGCAGGAGCAGCGGGACGAGGCGCGCAGGCAGAAGGAGCTGCTCAAGGCCCTGGAGACGCCAGAGGAGAAGAGAGCCCGGCGGCTGGCTAAGAAGGAGgcaaaggagaggaagaagagggagaagaTGGGCTGGAGCGAGGAGTACATGGGCTACACCAACGCAGACAACCCCTTTGGAGACAACAACCTGCTGGGCACCTTCAAATGGCAAAAGGtgggaagggagagggagggagacaggagaTGGGCTCTGCAGAAGAAGGGGATTGGGCACCTGGGGGAGAAGGAGCTGAAGGAGCGAAACAAACGCATCCAGGAGGAGAACCGGCGAGAGCTGCAGAAGGTGAAGCAGCTGCGCCTGGAGCGGGAGCGGGAGAAGGCCATGCGGGAGACGGAGCTGGAGCTGTtgcagagggagaaggaggcGGAGCACTTCAAGACGTGGGCGGAGCAGGAGGACAACTTCCACCTGCACCAGGCCAAGCTACGCTCTAAGATCCGTATCCGTGACGGCCGAGCAAAACCCATAGACCTGCTGGCCAAGTACATCAGCGCCGAGGATGACGACCTGGCCGTGGAGATGCACGAGCCCTACACCTTCCTGACCGGCCTGACGgtgtacatggagctggagcagggAAAGAACGTGGATTTCTGGCGCGACATGACAACCATCACCGAGGACGAGATTAGCAAACTGCGCAAACTGGAGGCATCAGGGAAAGGGCCGGGCGACCGTCGCGAGGGCATCAATGTGTCGGTCAGTTCGGACGTGCAGTGCGTGTTCAAGGGCAAGACCTTCAGCCAGCTGCAGGCGCTGCAGCTCAACATGGAGTCCAAGATCGCCGCCGGAGGCTCCAACCTGGACATCGGCTACTGGGAGAGCCTGCTGCAGCAGGTCAGGGTGTACATGGCCAGAGCCAGGCTGAGGGAGCGGCACCAGGACGTGCTGAGGCAGAAGCTGTACAAGCTGAAGCAGGAGCAGGGGGTGGAGAGTGAGCCGCTGTTCCCCATCGCCAAGCAGGAGCCCCCTTCACCACAGCCAGTgACTGGTGATGATGGTGCTGGAGCTGGCGAGGGTGGGGCGGCTGGTGTGGAGGACGCTGctgctgcctcctcctcctctactGCAGGGGCGGCGGAGGGCGAGGGTGGCGAGGGCGGTTCGGGCGGGGAGGCAGTGCTGACGGAGGAAGACCTGGCCCAGCAGAGCCTGGCGGAATACGACTCCGGCCGCTACAGTCCCCGCCTGCTGACCCCGGCCGAGCTGCCGCTGGACACGCACACCGTGGACCCCGAGGACGACCTGCAGAGGCTGCGGCTGGCCAGGACACAGCTGCAGGTCACAGGTCAGGCACGGGCCACGGCCTCTTACACTCGCTCGGgcGACGCGAGCGAGAGCGCGGAGGACGCATTCGTGCGGAGGGCGCGGGAGGGCATGGGCGGGGACGAGGCGCAGTTCAGCGTGGAGATGCCACTGACGGGGAAGATGTACCTGTGGGCCGACAAGTACCGGCCGCGCAAGCCCCGCTTCTTCAACCGCGTGCACACGGGCTTCGAGTGGAACAAGTACAACCAGACCCACTACGACTTCGACAACCCGCCGCCCAAGATCGTGCAGGGCTACAAGTTCAACATCTTCTACCCCGACCTGATCGACAAGCGCTCCACGCCGCAGTACTTCCTGGAGCCCTGCGCCGACAACAAGGACTTCGGTGTCCTGCGCTTCCACGCCGGGCCGCCCTACGAGGACATCGCCTTCAAGATTGTGAACCGCGAGTGGGAGTATTCTCACCGGCACGGCTTCCGCTGCCAGTTCGCCAACGGCATCTTCCAGCTGTGGTTCCACTTCAAGAGATACCGCTACCGCAGATagacggagagagaggggagaggagagaggtcAGTCCCTTCAGCCAGGTTAGTGGGCAGTGTGGTACTGTGAGGACGTGGATGTGGCCGGGGCCCAGACACAGGTCCGCAATGGTCTGGTATAGACTAATGACAGCGCTGGGCCACTGGAGGGAGCTGGGGAGTAATATGTACAGCCATCACCATAGGCAGGGATTCCACTGTAATACAAATGTCACTGCTGTTCATGGACGGAGTTGGTGCCCCCACACCAAACTGAACAGGAAACAGTTTTGTAACCAGCACGGACTGGTTTTCTGGGTCTTTTCTGAAAAGTTTCTGCATATTTTTAACCTGTTTCCCTGTTGTATGTCGGGAGGGGAGGGTGTCTTGTGTCCTGAGGTATGGATTGTAACTGTACCCCCC

Function

symbol description
cactin Involved in anterior/posterior axis specification, embryo; eye development; and positive regulation of embryonic development. Acts upstream of or within neural retina development. Is expressed in eye; immature eye; and tail bud. Orthologous to human CACTIN (cactin, spliceosome C complex subunit).

NR:

description
PREDICTED: cactin

GO: NA

KEGG:

id description
K25058 CACTIN; cactin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005817 True 3435 mRNA 0.61 10 10431563 10436502

Neighbor

gene id symbol gene type direction distance location
AMCG00005819 NA coding upstream 2597 10423109 ~ 10428966 (+)
AMCG00005820 NA coding upstream 15426 10412525 ~ 10416137 (+)
AMCG00005927 NA coding upstream 170098 10260649 ~ 10261465 (+)
AMCG00005928 NA coding upstream 213238 10207320 ~ 10218325 (+)
AMCG00005934 NA coding upstream 294847 10132128 ~ 10136716 (+)
AMCG00005818 mpnd,LOC106591182,LOC107717566 coding downstream 43708 10480210 ~ 10486749 (+)
AMCG00005858 NA coding downstream 66005 10502507 ~ 10502822 (+)
AMCG00005856 NA coding downstream 67076 10503578 ~ 10507292 (+)
AMCG00005857 NA coding downstream 84354 10520856 ~ 10523831 (+)
AMCG00005804 LOC106613805,LOC101170792,LOC103364385 coding downstream 179380 10615882 ~ 10623009 (+)
G154447 NA non-coding upstream 99469 10285514 ~ 10332094 (+)
G154451 NA non-coding upstream 128066 10302957 ~ 10303497 (+)
G154388 NA non-coding upstream 352127 10078307 ~ 10079436 (+)
G154343 NA non-coding upstream 487420 9905772 ~ 9944143 (+)
G154252 NA non-coding upstream 990182 9440493 ~ 9441381 (+)
G154505 NA non-coding downstream 87465 10523967 ~ 10526052 (+)
G154574 NA non-coding downstream 139477 10575979 ~ 10576437 (+)
G154583 NA non-coding downstream 231496 10667998 ~ 10668261 (+)
G154722 NA non-coding downstream 561147 10997649 ~ 10999389 (+)
G154775 NA non-coding downstream 737893 11174395 ~ 11180237 (+)
AMCG00005929 NA other upstream 75319 10267273 ~ 10356244 (+)
AMCG00005851 NA other upstream 126654 10297889 ~ 10304909 (+)
AMCG00005802 NA other upstream 341794 10065160 ~ 10089769 (+)
G154330 NA other upstream 547608 9881382 ~ 9883955 (+)
G154283 NA other upstream 841765 9587802 ~ 9589798 (+)
AMCG00005821 NA other downstream 26035 10462537 ~ 10469406 (+)
G154486 NA other downstream 34041 10470543 ~ 10471631 (+)
G154499 NA other downstream 76002 10512504 ~ 10516390 (+)
AMCG00005835 LOC107586405 other downstream 243435 10679937 ~ 10714707 (+)
AMCG00005834 LOC108271164,LOC108430094,LOC107393192,LOC107719559,LOC107699414 other downstream 285250 10721752 ~ 10736626 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000073_00792429_00801911 CACTIN, CACTIN.L coding CI01000073 null 792429 ~ 802248 (+)