AMCG00005818 (mpnd,LOC106591182,LOC107717566)


Basic Information

Item Value
gene id AMCG00005818
gene name mpnd,LOC106591182,LOC107717566
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10480210 ~ 10486749 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005818
GCAGGGGGCTCATCCAGCAGTGCACAGCCGGACGTGGCCGTGGCTCGCTGGACAGTGCGGGGAGCGGGACGGGGCGCTGGACACACACCACCatcagcacacaacacacacaaaaaacacacgacacacacacgacacacacacgacacactTCCTATCCGCCGCGCCGCTGTGTCACAGAGCCGGAAGCGCACCGCGCCGCACAAACAACTGATCAActacaacagagagagagagagagagagagagagagagagagagaggtggggggtcTGATCACACGCATTTAATACAGCTGCCATATTCATTATCCTTTGTTTCTGATTGTTCTGTCCTGGTTATGATTAAACGAGCACTCGCGTAATTCAACACGATAAACAGGAgccggtgagagagagagagagagagagagagtgagagagagagaggaggggaggggaattAATATGAGAACAACAAAACAGGGAAACTGCAGAAGACAGGCGccttcattttctgtttgtcaATTATAAGCTCCAGTAAAAGCTCTGCCCGGGGACTGAACCCCTCGCCGCCCCGAGTCAGCGCCTCCAGCCGCCCGAGTCCGACCCTCTGCGGGACCCGCCGGCCGGAGGTGGAAATGGgctCTGAGCCGCCGTCTTCCCCCCCGGTGCtggaggagggggtggaggaggaggaggaggagctgagTGGGGGCGAGGATGTGGACACCAGGGTGCCCCCTGGCCGTGGCTCGGTACTGACACGGCGGGGTATCACGCTCAGGGTGCTGCTGAAAGACGGGCTGGTGGAGCCAGGCGACGGCGTGCTGTCCATACACTATCTgGGTAAGAAGTTTGTGGGTGACCTGCTGTCCGATGGAAAGATCCGCTGGGTGGAGACGGGTCAGGTGTTCAACTCCCCGAGTGCCTGGGCCACCCACTGCAAGCGCCTGGTCAACCCGGCCAAGAAGTCGGGCTGCGGCTGGGCCTCTGTGCGGTACCGCGGACACAAGCTGGTCCAGTACAAGACCAGCTGGCTGCAGAAGTACCAGCCCAGCGCTGAGGTGAGCTTGGCAAGTGAGGGAGAGGACGaggagatgggggaggaggaggaggaggaaggaaagACAGGCCTGGTGACGGAGGATAAGAACAGGAAacaagACAACATTCCGATGGTGCGCCGTGGAGACAGGGACCGGGTACCAGTGAGATACTGCACTCTGGGCAGCAGGGACTCTGGACGGtcaCCCTTCAACGTGGCCGTGTCCAGCAATGTGCTGCTCCTgctggattTCCACTGCCACCTGACGACCAGTGAGGTGGTGGGGTATCTGGGGGGGCGCTGGGACACCAACACACAGTtactCACCGTGTTGAGGGCGTTCCCCTGTCGCTCGCGATTGGCTGACCGAGACTCCGCCCCCGCCGTGGAGGAGGAGATCTGCCAGAACCTGTTCATGCGAGGGCTGTCGTTGGTGGGCTGGTACCACAGCCATCCGCGTGgccctgccctgccctcccTGCAGGACATCGACTCGCAGATGGATCATCAGCTGCGGCTGCAGGGGAGCAGCAACGGCTTCCAGCCCTGCCTAGGCATCATCTGCGGGCCCTATTACCACGGCAACCAGGGCGTGGCCTCCACTATAACCCCGTTCTGGGTTGTGCCCCCTCCCGAGCAAAGGCCCAATGACTACGGCATCCCGGTGGCTGTGGAGGTGACGTACGTGCAGGACAACTTCCTGACCAGCGACGTGCTGAACGAGATGATGCTGCTGGTGGAGTTCTACAGGGGGGCGGCCGACCTGGTGCAGTTTAGCCAGCTGTGGAGCCCTGAGACCAGCGTCCTGGAGAAGATCAAGgGTTCACTGAGTGGCCACGCCCCCAAGGACCAGGCTTACAGTCAGATCCTGGAGCATGTGTACAGCCAGCTGAGCAACACacactgaggagagagaggggggggtgggaggaagaaagagagcGGGTAGAGGAAGAGGAGTGAGTTTCCCTTTACCACACAGTCACCTCTCGGCTGCAGTGAATAGGACACCCACAGCGCAGCCTGTacccttcctctctcctcttggTTGCACCCCTCGCAGGACATTCAGAGACCTGCAGCCTCTCCCCTTCCGCCCCAGTACCGAgacagaatgttttatttttattgtttgtgttgttgtccttgtcattgttgtatttttgctGTGGGATCAGAGCATTTACCTGCTGAATACAGACACTGGAACACCACA

Function

symbol description
mpnd Predicted to enable histone binding activity; peptidase activity; and transcription coactivator activity. Predicted to be involved in chromatin remodeling and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within proteolysis. Orthologous to human MPND (MPN domain containing).

NR:

description
PREDICTED: HEAT repeat-containing protein 5B-like isoform X3

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K24173 MPND; MPN domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005818 True 2242 mRNA 0.59 14 10480210 10486749

Neighbor

gene id symbol gene type direction distance location
AMCG00005817 cactin,LOC106600017 coding upstream 43708 10431563 ~ 10436502 (+)
AMCG00005819 NA coding upstream 51244 10423109 ~ 10428966 (+)
AMCG00005820 NA coding upstream 64073 10412525 ~ 10416137 (+)
AMCG00005927 NA coding upstream 218745 10260649 ~ 10261465 (+)
AMCG00005928 NA coding upstream 261885 10207320 ~ 10218325 (+)
AMCG00005858 NA coding downstream 15758 10502507 ~ 10502822 (+)
AMCG00005856 NA coding downstream 16829 10503578 ~ 10507292 (+)
AMCG00005857 NA coding downstream 34107 10520856 ~ 10523831 (+)
AMCG00005804 LOC106613805,LOC101170792,LOC103364385 coding downstream 129133 10615882 ~ 10623009 (+)
AMCG00005803 NA coding downstream 139700 10626449 ~ 10633432 (+)
G154447 NA non-coding upstream 148116 10285514 ~ 10332094 (+)
G154451 NA non-coding upstream 176713 10302957 ~ 10303497 (+)
G154388 NA non-coding upstream 400774 10078307 ~ 10079436 (+)
G154343 NA non-coding upstream 536067 9905772 ~ 9944143 (+)
G154252 NA non-coding upstream 1038829 9440493 ~ 9441381 (+)
G154505 NA non-coding downstream 37218 10523967 ~ 10526052 (+)
G154574 NA non-coding downstream 89230 10575979 ~ 10576437 (+)
G154583 NA non-coding downstream 181249 10667998 ~ 10668261 (+)
G154722 NA non-coding downstream 510900 10997649 ~ 10999389 (+)
G154775 NA non-coding downstream 687646 11174395 ~ 11180237 (+)
G154486 NA other upstream 8579 10470543 ~ 10471631 (+)
AMCG00005821 NA other upstream 10804 10462537 ~ 10469406 (+)
AMCG00005929 NA other upstream 123966 10267273 ~ 10356244 (+)
AMCG00005851 NA other upstream 175301 10297889 ~ 10304909 (+)
AMCG00005802 NA other upstream 390441 10065160 ~ 10089769 (+)
G154499 NA other downstream 25755 10512504 ~ 10516390 (+)
AMCG00005835 LOC107586405 other downstream 193188 10679937 ~ 10714707 (+)
AMCG00005834 LOC108271164,LOC108430094,LOC107393192,LOC107719559,LOC107699414 other downstream 235003 10721752 ~ 10736626 (+)
G154636 LOC108435919,LOC108271001 other downstream 426648 10913397 ~ 10915729 (+)
AMCG00005840 LOC100304646,LOC107384145 other downstream 520049 11006798 ~ 11010354 (+)

Expression


Co-expression Network