AMCG00005834 (LOC108271164,LOC108430094,LOC107393192,LOC107719559,LOC107699414)


Basic Information

Item Value
gene id AMCG00005834
gene name LOC108271164,LOC108430094,LOC107393192,LOC107719559,LOC107699414
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10721752 ~ 10736626 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005834
GCGGTCGGGGGGTACGAGAGCAGCAGAGGCCAGCCGAACTGGGGACCCCGAAAGTGGAGCGGACCTCGGTGTGATGCTACGGCTGCTGCCCGTGGACGATCCGACGGCTACCGGTCTGCAGAGGAGCCTTGGGGGCTGAGAGAGGGAAAAGGAACGAGGGAGACTTCTCTTCTGAAACAGGAGGAGataaaagaagaacaaaaaggaggaggaggaggaaatcAAAATCCAAACTCCTGTCTTCCTCACACTGAAAGATCCTGGTATTCCAACATCTGcctgttttttggggggggattctgtgtctgtgtttgctcTCCCTTCTCTCGGAGTAACTGCGACTGGAGTCGGAGAGAGCTTGGGGAGTTTGGGAGCAGGAGGAGGTTGGACGGACGGAcgcaggagaggaggaggaggaggagaaggggacGGAGGGGTGGGGGCAGCCGGTGCTGGTGTGTTGGACTGACTCCCAGGAGCCGCGGAGGGGTTTGGCGCTGGGGGGGGGCCCAGCGGGCAGCAGGACTGTGGGCACCTCTGCTGTGGGGAGAATGTTTCACCAGGGACGCCATCCGTACTACGAAATGTCTTATGGGCTGAATATTGAAATGCACAAACAGGCGGAGATTGTGAAGAGACTCAGTGCAATCTGCGCCCAGATCATCCCCTTCCTCTCCCAGGAGCATCAGCAGCAGGTGGTGCAGGCGGTGGACAGGGCCAAGCAGGTCACCATGGCTGAGCTCAACGCCATCATCGGAcagcagcagctccagcaccTGTCTCACCACACCCCCGGGATCCCGCTGACCCCTCACCCCTCCGGCCTGGCCTCACTGGGGGGGGGCTCGGGGCTGCTGGCCCTCTCCGGGGCGCTTGGCGTCTCCGCTCACCTGGCCGCCAAGGACGACCGCAACCACCTGGACTCTGACCACCTGCGAGaGGGAGCACCTAGCAGGGATAGCGATGGGGACAAGAGCGAGGACAACCTTGTAGTGGACGTGTCCAACGAGGACCCAGCCTCCCCCCCAGGCAGCAGCAGGACCCCGTCCCCCCACGGCAATGGGCTGgaccaccccccctccctcagGAAGGAGGTGCCCGGGACCCCCAGCCCCCCCGGctcgccccccccacccagcccCCCTCCAGTGACCAAGAGCAAGGACGCTGTGCtgGGTGAGAAGTCTCGCTCTCCTTCCTCTAAGTCAGCCAGCCCCTCTCCCCACTGTGACTCTCTGACTCCAGGCCCAGGTCCGAGCTCCGCCTCCTGCCTGCGCATCGTCACCAAGGGCCCCCCCGCCGAGCCCCTGGCTCTGCGCAGTCCGCTCAGCATCTCTGGCTCGTACCCGGCCCATTTCGGTGTGGTGGCCTATGAGTCGCGCTCTCACCTGAGGACCCCAGGACTGTCCTCCACAGTGCCGGGGATGACTGGGGGGAAACCCGCCTACTCGTTCCACGTGAGCGCGGACGGGCAGATGCAGCCGGTGCCCTTCCCCCCCGACGCCCTGCTGGGCCCGGGCATCCCGCGCCACGCCCGGCAGATCCACACGCTGGCCCACGGGGAGGTGGTGTGCGCCGTCACCATCAGCACCTCCACGCGCCACGTCTACACCGGCGGCAAGGGCTGCGTCAAGGTCTGGGACATCAGCCAGCCTGGCAGCAAGAGCCCCATGGCACAGCTGGACTGCCTGAACAGAGACAACTACATCCGCTCCTGTAAGCTGCTCCCCGACGGGCGGACCCTGATAGTGGGGGGGGAGGCCAGCACGCTGTCCATCTGGGACCTGGCCACGCCCACCCCGCGCATCAAGGCGGAACTGACGTCCTCGGCCCCCGCCTGCTACGCCCTGGCCATCAGCCCCGACGCCAAGGTGTGCTTCTCCTGCTGCAGCGACGGCAACATCGTGGTTTGGGACCTGCAGAACCAGACCCTCGTCAGGCAGTTCCAGGGCCACACAGACGGCGCCAGCTGTATCGACATCTCCAACGACGGGACCAAGCTGTGGACGGGCGGCCTGGACAACACGGTGCGCTGCTGGGACCTGAGGGAGGGGCGGCAGCTCCAGCAGCACGACTTCACCTCACAGATCTTCTCCCTGGGCTACTGTCCCACGGGCGAGTGGCTGGCCGTGGGGATGGAGAGCAGCAACGTGGAGGTGCTGCACGTCTCCAAGCCCGACAAGTACCAGCTGCACCTGCATGAGAGCTGCGTGCTGTCGCTCAAGTTCGCCTACTGCGggAAGTGGTTTGTGAGCACCGGCAAGGACAATCTGCTGAATGCCTGGAGGACACCGTATGGAGCCAGTATATTCCAGTTCATTGTGACCGGCTCGGGGGACAAGAAGGCCACTGTGTACGAGGTGGTCTACTGA
>TU194711
GGCGCTGGGGGGGGGCCCAGCGGGCAGCAGGACTGTGGGCACCTCTGCTGTGGGGAGAATGTTTCACCAGGGACGCCATCCGGTCCCTGTACAGCCCGGTCAGCCCTTCAAGTTCACTGTCCTGGAAACTCTGGACCGGATCAAAGAGGAATTCCAGTTCCTGCAGGCCCAGTACCACAGCCTGAAGCTGGAGTGTGAGAAGCTGGCCAGTGAGAAGACCGAGATGCAGAGACACTACATCATGTACTACGAAATGTCTTATGGGCTGAATATTGAAATGCACAAACAGGCGGAGATTGTGAAGAGACTCAGTGCAATCTGCGCCCAGATCATCCCCTTCCTCTCCCAGGAGCATCAGCAGCAGGTGGTGCAGGCGGTGGACAGGGCCAAGCAGGTCACCATGGCTGAGCTCAACGCCATCATCGGAcagcagcagctccagcaccTGTCTCACCACACCCCCGGGATCCCGCTGACCCCTCACCCCTCCGGCCTGGCCTCACTGGGGGGGGGCTCGGGGCTGCTGGCCCTCTCCGGGGCGCTTGGCGTCTCCGCTCACCTGGCCGCCAAGGACGACCGCAACCACCTGGACTCTGACCACCTGCGAGaGGGAGCACCTAGCAGGAGTAAGTCAGTGTCATCGACGGACAGCCAGCACTGTGAGGAGCGGGGGGGACCCTCGGGGGAATACGGCTCTGCAGGGGGGGGTGACAGCAAGAGGAGACGCTGTGACGACAAGGACACAGTTACACACTATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005834 True 2372 mRNA 0.64 18 10721752 10736626
TU194711 False 758 TUCP 0.62 9 10722332 10730209

Neighbor

gene id symbol gene type direction distance location
AMCG00005836 aes,chico,LOC103379965,LOC106574496,LOC107558286 coding upstream 9193 10701010 ~ 10712559 (+)
AMCG00005837 NA coding upstream 24751 10696777 ~ 10697001 (+)
AMCG00005803 NA coding upstream 88320 10626449 ~ 10633432 (+)
AMCG00005804 LOC106613805,LOC101170792,LOC103364385 coding upstream 98743 10615882 ~ 10623009 (+)
AMCG00005857 NA coding upstream 197921 10520856 ~ 10523831 (+)
AMCG00005833 NA coding downstream 108910 10845536 ~ 10846858 (+)
AMCG00005826 sirt6,LOC107667852 coding downstream 145993 10882619 ~ 10886247 (+)
AMCG00005867 eef2b,ef2,LOC106613766,LOC107552698 coding downstream 169731 10906357 ~ 10912672 (+)
AMCG00005868 NA coding downstream 183322 10919948 ~ 10923547 (+)
AMCG00005869 unc13a coding downstream 193168 10929794 ~ 10962687 (+)
G154583 NA non-coding upstream 53491 10667998 ~ 10668261 (+)
G154574 NA non-coding upstream 145315 10575979 ~ 10576437 (+)
G154505 NA non-coding upstream 195700 10523967 ~ 10526052 (+)
G154473 NA non-coding upstream 231898 10419906 ~ 10489854 (+)
G154451 NA non-coding upstream 418255 10302957 ~ 10303497 (+)
G154722 NA non-coding downstream 261023 10997649 ~ 10999389 (+)
G154775 NA non-coding downstream 437769 11174395 ~ 11180237 (+)
G154815 dot1l non-coding downstream 625379 11362005 ~ 11362233 (+)
G154816 NA non-coding downstream 633798 11370424 ~ 11370912 (+)
G154831 NA non-coding downstream 642154 11378780 ~ 11379289 (+)
AMCG00005835 LOC107586405 other upstream 7045 10679937 ~ 10714707 (+)
G154499 NA other upstream 205362 10512504 ~ 10516390 (+)
G154486 NA other upstream 250121 10470543 ~ 10471631 (+)
AMCG00005821 NA other upstream 252346 10462537 ~ 10469406 (+)
AMCG00005929 NA other upstream 365508 10267273 ~ 10356244 (+)
G154636 LOC108435919,LOC108271001 other downstream 176771 10913397 ~ 10915729 (+)
AMCG00005840 LOC100304646,LOC107384145 other downstream 270172 11006798 ~ 11010354 (+)
G154756 NA other downstream 346535 11083161 ~ 11086011 (+)
G154798 NA other downstream 583338 11319964 ~ 11361770 (+)
AMCG00005907 LOC105011584,LOC103026129,LOC106584418,LOC104949087,LOC106613791 other downstream 669680 11406306 ~ 11409672 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location