AMCG00005839 (LOC103367321,LOC107729686,LOC103398303)


Basic Information

Item Value
gene id AMCG00005839
gene name LOC103367321,LOC107729686,LOC103398303
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10738544 ~ 10752114 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005839
atgaGAAGGCAGGACAGtctgAAGCTGGAGTGTGAGAAGCTGGCCACGGAGAAGACAGAAATTCAGAGACACTACGTCATGGTGTCAGTGTGGTTGGCACAGGCCACCGTGCACGCCCCCCATCCTGCCCCTGGGCCGCTTGGCACCCGACCCAGGGCGCATTCTTGGCTGGCAGGTTTGGAGTTGAGAAGTTGCTTAGCAACAGTGGAGTGTTGGCAGTGCGATGGAACACGGGAGCCAGTTCTCAGAACACGGCCTGCCTCTCCGACTtactaTGAAATGTCTTATGGGTTAAACATTGAAATGCACAAGCAGACGGAGATCGCCAAGCGCCTGAACGTGATCTGCGCCCAGCTCATCCCCTTCCTGTCGCAGGAGcaccagcagcaggtGGTCCAGGCCATGGAACGCGCCAAGCAGGTGACTATGGGGGAGTTGAATGCCGCGATAGGGCACCAGCTCCAGGCCCAGCACCTGTCCCACCACGCTCAGGGCCTGCCCCTGGGCGCCCACCCCTCCGGCCTGCCCCCGGGCGGCCTGGCGTCCCTGGGGGGCGGCTCGGGGCTGCTGGCTCTGACGGGAGCCCTGGGAGCGCAGGCCTCTCTCGCTGCCAAGGAGGAGCGCTCTCACCTGGAGGCGGCGGCGCTGGAGCATCACAGAGGTTGTTCTTGTTGTTGGGTTGGTTTCGGCTCGCTCTGGGGGCGCTGTGCGATGCTGCGGGGGATGGAGCTAGACCGGGAGCCTGGGCCGagctCGCTGTCCAACGGTGAAAAGAGTCGCCCACCGCCCCCAGACTACCTCAGCAATGGCAAGAAGAGAAAAGCAGAGGAGAAGGAGTTCATGACAGACTATggCAGCGATGCAGACAAGAGTGATGATAACTTGGTGGTTGACGAGGACCCCGCGTCCCCTCACAGTGTGCAGTCATTCTCCTCCCGTGAGAACGGTCTGGACAAGCTGCCCCTGCAGAGGAAGGACCCCCCCCAGGCCAGCCCGGCCTCCCTGGCCTCCTCCAGCAGTGCGGCCTCCCCCTCCCGCGCCAAGGAGCTCCCACAGagtgAGAAGTCCAACACTCCAGGGGTGAAGCCAGGGACCCCGATGCCCCCCGGGGAGCCATCGACACCGGGGCCCAGCACCGCGCCAGCACAGTTCAGACCTGTGCCAGGGAAATCCGGAGTGGATCCACTGGCCCTAGGTCTGCGCACTCCTCTTTCGGTGCAAGGCTCGTACCCCCCGGGTGCGTTCGGGTTGCCCCCCCCCGGGGTGAACGGGGAGCTGGGGGGTGCGGGGGGCTACGCAGGGCTGCACCTCGTCTCGCCGCAGCAGATCAACGGAGCGGCAGCTGCGGCCGTCGGCTACGGACGATCGCCTGTGGTGGGCTATGAGTCGCCCCACCCCCATGTCAGGATCCCTGGGCTGCCCTCCAGCCTGCAGAGCGCCTCCTCTGGAAAGCCGGAAGTGGTTTGTGAGCACCGGCAAAGACAACCTGCTGAACGCCTGGAGGACGCCGTACGGAGCCAGTATATTCCAGGTGCGCGTTCAAAGGAATCCTCGTCCGTGCTGAGCTGCGACATCTCCCCCGATGACCAGTTCATCGTCACGGGGTCCGGGGACAAGAAGGCCACCGTGTACGAGGTCATCTACTGA
>TU194798
NNNTGCGTGCTGTCGCTCAAGTTCGCCTACTGCGGGAAGTGGTTTGTGAGCACCGGCAAAGACAACCTGCTGAACGCCTGGAGGACGCCGTACGGAGCCAGTATATTCCAGTCAAAGGAATCCTCGTCCGTGCTGAGCTGCGACATCTCCCCCGATGACCAGTTCATCGTCACGGGGTCCGGGGACAAGAAGGCCACCGTGTACGAGGTCATCTACTGAGGCCCCGCCCCGAGGCCAGGCGTGGGTGTGGTGACTGCACTGAGCCaatgagaggaggaggaggagtggcaTGGAGAGAACCAGTGAGCGAGCTGTGCTCCCCCCGGATGAtccttttatttgaaaaatgtgtttttttgtttttgtttcggAGAGAGTTTAAAACAGTCCCTGCGTTCGGAGTGCGAAGTGCGGCTGGAATCGgtgtcgggggtgggggggggagggtgagGATCAGAGGATAGAAAGACATCGAGAGAGTGATTCCTCCAAAGACtatctttttttcattttattttttaactgaaaaaggATTAAAGCTCTGGTAGTGACAGTAGCCAGAAGAGACTGAGACCTGATGACTGCAGATTCTTCAGAAGCAAAGACTGACTGGATTTCACTGACCTGGAGGGGGCAGGAGTCTGCGGTCTGCCCCAGTGTTTATTacctgtgtgtgggtgtgtggtgCAAAGACAGCCCCTCCCAATGCTGCATCCCTACAGCTCCACCCCTCTGTCACACATGCTGAGACACAGTGGGTTTTCCTAGTGTACCAAAAAAGCTTGACCTAAATTGCAGGTGAAGACAAGTTGcgcgcacaaacacacacagaaggaCGCACTCCGGCCAAGGGTGCAGTGGGCAGGGATGGAGGTGGCCAGACAGTGCAGCCTCTGCCCAGGAGAATGACTACTGCAGGTGGGCATTGTGGGATGGGAGGTGCTGTACATTAGGAGTTGTAGTTTTTGTTCGCCAGCCCCCCATCCCTCCTTTCCGGCATCGGTGCAGCCTCCTATACTCCAGTCCGGCTCACTGCTGGGCCTGGAGCGACACggtacagtccagtacagcagggtctccatcTTCTCAATGGCTGCCGTCTCCCAGTCTCTAGCCGTTGCATCGGGTTTGAATTTCCCGCTATGATGTATAAATAAGTTTGTGAACTCTGGTTCATTGCACTGGGGGAAGCACCCACTGCtctgttgattttctttttttgctgtaGCATCGTTCCTCTGctctccccctccatctctcctccCTGTGCAGACAGCGGACGGAGCGGCGCGGCCGTTTTCCCTGTCCTGGGACGGCAGGGTCGTGCTGTAattg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005839 True 1647 mRNA 0.64 16 10739660 10752114
TU194798 False 1335 lncRNA 0.54 3 10738544 10742848

Neighbor

gene id symbol gene type direction distance location
AMCG00005805 NA coding downstream 73289 10659811 ~ 10665255 (-)
AMCG00005863 NA coding downstream 180789 10551424 ~ 10557755 (-)
AMCG00005859 NA coding downstream 198498 10526146 ~ 10540046 (-)
AMCG00005861 LOC108230546,LOC102305552,LOC100698652,LOC101481066,LOC102203928 coding downstream 218926 10508657 ~ 10519618 (-)
AMCG00005860 sh3gl1,LOC103358795,LOC102230617,LOC104918435 coding downstream 235862 10489878 ~ 10502682 (-)
AMCG00005838 plpp2,lpp2,LOC106584410 coding upstream 16677 10768791 ~ 10777146 (-)
AMCG00005828 NA coding upstream 36440 10788554 ~ 10806283 (-)
AMCG00005830 NA coding upstream 66756 10818870 ~ 10828071 (-)
AMCG00005829 NA coding upstream 77876 10829990 ~ 10837970 (-)
AMCG00005827 NA coding upstream 115349 10867463 ~ 10869932 (-)
G154642 NA non-coding downstream 44579 10690148 ~ 10693965 (-)
G154575 NA non-coding downstream 162042 10575970 ~ 10576502 (-)
G154400 NA non-coding downstream 593613 10144483 ~ 10144931 (-)
G154399 NA non-coding downstream 599619 10137428 ~ 10138925 (-)
G154391 NA non-coding downstream 646928 10089554 ~ 10091616 (-)
G154675 NA non-coding upstream 50450 10802564 ~ 10818716 (-)
G154715 NA non-coding upstream 227444 10979558 ~ 10983480 (-)
G154723 NA non-coding upstream 245663 10997777 ~ 10999382 (-)
G154745 NA non-coding upstream 249560 11001674 ~ 11078201 (-)
G154782 NA non-coding upstream 454917 11207031 ~ 11208176 (-)
AMCG00005862 NA other downstream 187189 10543534 ~ 10551355 (-)
AMCG00005850 NA other downstream 385762 10295599 ~ 10352782 (-)
G154250 NA other downstream 1303604 9425290 ~ 9434940 (-)
G154142 NA other downstream 1645971 9090422 ~ 9092573 (-)
G153806 NA other downstream 2613859 8091748 ~ 8124685 (-)
G154677 ef2,eef2,LOC106613766,LOC101482186,LOC107384141,LOC108427162,LOC108414462,LOC102796634 other upstream 91727 10843841 ~ 10912745 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other upstream 97401 10849515 ~ 10865796 (-)
AMCG00005876 oaz1,oaz1s other upstream 568146 11320260 ~ 11325068 (-)
AMCG00005877 sf3a2 other upstream 584481 11336595 ~ 11339135 (-)
AMCG00005879 dot1l,LOC106920479 other upstream 597131 11349245 ~ 11360874 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_04393891_04405162 NA coding CI01000030 null 4391950 ~ 4405618 (+)