AMCG00005851


Basic Information

Item Value
gene id AMCG00005851
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10297889 ~ 10304909 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005851
ATGGAGGTGAGCGGCGTGACAAAGCTGTACTTGAGGGACAGCTCCAGGGCGCGCGCCGTCTTGTTCGCTCTCTCTTCCGGGAACAAGAGGACAGTGTGCAGGGGCATCAGTACAGAGGACAGAGAGGTCAGGACACAGGACAGAGGAGTCAAGAAAGGGctcaacactacactacagtacccTGCACTTATTCATTcctgcccccctccctcctgctcACCTGAGGCGGGGTTCCCGTCGGTCAACAGGATGATGAGGGACACACTGTGGTCAGGCAGTCGGCCGGCAGCCTTGTCCTGCTCCAGCATGCGCACTGACTCCAGCACCGCCTGGTTTatgtctgtgcctgtgtgggGGGGCAGACAGGGGGCAGAGCGAGGGTTGCCACTTTCGGAAGCCGTGGTCGAACACAAGGAGGGCAAAGTAGTCGTCCACGTAGATTTCGCCCAGGATGGCATCGAGGGCCTCACGGGTGATGAAGAAGTTTCCGTCAATAAGGGTGGAGGGGCAGCCGACACAACTGCGCTGCTTCTCCATGtGGACAGTGACCCTCACTTCATCGTGCAGCCGCCCAATCAAAACGACACTCTGTGCTTCAACATTGACGAGAGCCCAGGGGTCATCTTAAACCTGGTCAGAGACCCCCAGACAGGCACGGTGGTGAATGGGCAGACTATCGCGGACAAGCACCCGGACCCCAGTGGCAGGGTGGGCACCTACTTCTGGCGCTTCGGCATCATGAGCCAGAGCCTGGGCCTCAGGCTGGACGTGTCCACACAGGGCATCGAGCTTCTGGATGCGCAAACCGGGCTGGAGCTCTCCTGGGACGAGTCCCTGACACTCAAGCAGCCCAAGTGA
>TU194536
GtctaatgtgtgtgtatctgtgcagtGGACAGTGACCCTCACTTCATCGTGCAGCCGCCCAATCAAAACGACACTCTGTGCTTCAACATTGACGAGAGCCCAGGGGTCATCTTAAACCTGGTCAGAGACCCCCAGACAGGCACGGTGGTGAATGGGCAGACTATCGCGGACAAGCACCCGGACCCCAGTGGCAGGGTGGGCACCTACTTCTGGCGCTTCGGCATCATGAGCCAGAGCCTGGGCCTCAGGCTGGACGTGTCCACACAGGGCATCGAGCTTCTGGATGCGCAAACCGGGCTGGAGCTCTCCTGGGACGAGTCCCTGACACTCAAGCAGCCCAAGTGAGTCCAGCCTGGTGCCCACTGTAGCAGACAGTAGAGTCCAGTACAGGCCAGAACACCACAGACAGTacaatcc

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005851 True 858 mRNA 0.60 7 10297889 10304837
TU194536 False 417 lncRNA 0.59 2 10304218 10304909

Neighbor

gene id symbol gene type direction distance location
AMCG00005927 NA coding upstream 36424 10260649 ~ 10261465 (+)
AMCG00005928 NA coding upstream 79564 10207320 ~ 10218325 (+)
AMCG00005934 NA coding upstream 161173 10132128 ~ 10136716 (+)
AMCG00005798 pitpnm3,LOC102785427 coding upstream 245080 10043818 ~ 10052809 (+)
AMCG00005799 NA coding upstream 265067 10020967 ~ 10032822 (+)
AMCG00005820 NA coding downstream 107616 10412525 ~ 10416137 (+)
AMCG00005819 NA coding downstream 118200 10423109 ~ 10428966 (+)
AMCG00005817 cactin,LOC106600017 coding downstream 126654 10431563 ~ 10436502 (+)
AMCG00005818 mpnd,LOC106591182,LOC107717566 coding downstream 175301 10480210 ~ 10486749 (+)
AMCG00005858 NA coding downstream 197598 10502507 ~ 10502822 (+)
G154388 NA non-coding upstream 218453 10078307 ~ 10079436 (+)
G154343 NA non-coding upstream 353746 9905772 ~ 9944143 (+)
G154252 NA non-coding upstream 856508 9440493 ~ 9441381 (+)
G154175 NA non-coding upstream 1103702 9192296 ~ 9194187 (+)
G154147 NA non-coding upstream 1189519 9100429 ~ 9108370 (+)
G154473 NA non-coding downstream 114997 10419906 ~ 10489854 (+)
G154505 NA non-coding downstream 219058 10523967 ~ 10526052 (+)
G154574 NA non-coding downstream 271070 10575979 ~ 10576437 (+)
G154583 NA non-coding downstream 363089 10667998 ~ 10668261 (+)
G154722 NA non-coding downstream 692740 10997649 ~ 10999389 (+)
AMCG00005802 NA other upstream 208120 10065160 ~ 10089769 (+)
G154330 NA other upstream 413934 9881382 ~ 9883955 (+)
G154283 NA other upstream 708091 9587802 ~ 9589798 (+)
G154251 NA other upstream 859620 9435900 ~ 9438269 (+)
AMCG00005787 NA other upstream 1443789 8828578 ~ 8854100 (+)
AMCG00005821 NA other downstream 157628 10462537 ~ 10469406 (+)
G154486 NA other downstream 165634 10470543 ~ 10471631 (+)
G154499 NA other downstream 207595 10512504 ~ 10516390 (+)
AMCG00005835 LOC107586405 other downstream 375028 10679937 ~ 10714707 (+)
AMCG00005834 LOC108271164,LOC108430094,LOC107393192,LOC107719559,LOC107699414 other downstream 416843 10721752 ~ 10736626 (+)

Expression


Co-expression Network