Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00005929 |
| gene name | NA |
| gene type | misc |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030142.1 |
| NCBI id | CM030142.1 |
| chromosome length | 21087710 |
| location | 10267273 ~ 10356244 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0031231 | intrinsic component of peroxisomal membrane | cellular_component |
| GO:0005777 | peroxisome | cellular_component |
| GO:0005778 | peroxisomal membrane | cellular_component |
| GO:0005779 | integral component of peroxisomal membrane | cellular_component |
| GO:0044438 | obsolete microbody part | cellular_component |
| GO:0044439 | obsolete peroxisomal part | cellular_component |
| GO:0031903 | microbody membrane | cellular_component |
| GO:0042579 | microbody | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00005929 | False | 326 | mRNA | 0.52 | 2 | 10267273 | 10271460 |
| TU194520 | True | 425 | lncRNA | 0.47 | 2 | 10267273 | 10356244 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00005927 | NA | coding | upstream | 5808 | 10260649 ~ 10261465 (+) |
| AMCG00005928 | NA | coding | upstream | 48948 | 10207320 ~ 10218325 (+) |
| AMCG00005934 | NA | coding | upstream | 130557 | 10132128 ~ 10136716 (+) |
| AMCG00005798 | pitpnm3,LOC102785427 | coding | upstream | 214464 | 10043818 ~ 10052809 (+) |
| AMCG00005799 | NA | coding | upstream | 234451 | 10020967 ~ 10032822 (+) |
| AMCG00005820 | NA | coding | downstream | 56281 | 10412525 ~ 10416137 (+) |
| AMCG00005819 | NA | coding | downstream | 66865 | 10423109 ~ 10428966 (+) |
| AMCG00005817 | cactin,LOC106600017 | coding | downstream | 75319 | 10431563 ~ 10436502 (+) |
| AMCG00005818 | mpnd,LOC106591182,LOC107717566 | coding | downstream | 123966 | 10480210 ~ 10486749 (+) |
| AMCG00005858 | NA | coding | downstream | 146263 | 10502507 ~ 10502822 (+) |
| G154388 | NA | non-coding | upstream | 187837 | 10078307 ~ 10079436 (+) |
| G154343 | NA | non-coding | upstream | 323130 | 9905772 ~ 9944143 (+) |
| G154252 | NA | non-coding | upstream | 825892 | 9440493 ~ 9441381 (+) |
| G154175 | NA | non-coding | upstream | 1073086 | 9192296 ~ 9194187 (+) |
| G154147 | NA | non-coding | upstream | 1158903 | 9100429 ~ 9108370 (+) |
| G154473 | NA | non-coding | downstream | 63662 | 10419906 ~ 10489854 (+) |
| G154505 | NA | non-coding | downstream | 167723 | 10523967 ~ 10526052 (+) |
| G154574 | NA | non-coding | downstream | 219735 | 10575979 ~ 10576437 (+) |
| G154583 | NA | non-coding | downstream | 311754 | 10667998 ~ 10668261 (+) |
| G154722 | NA | non-coding | downstream | 641405 | 10997649 ~ 10999389 (+) |
| AMCG00005802 | NA | other | upstream | 177504 | 10065160 ~ 10089769 (+) |
| G154330 | NA | other | upstream | 383318 | 9881382 ~ 9883955 (+) |
| G154283 | NA | other | upstream | 677475 | 9587802 ~ 9589798 (+) |
| G154251 | NA | other | upstream | 829004 | 9435900 ~ 9438269 (+) |
| AMCG00005787 | NA | other | upstream | 1413173 | 8828578 ~ 8854100 (+) |
| AMCG00005821 | NA | other | downstream | 106293 | 10462537 ~ 10469406 (+) |
| G154486 | NA | other | downstream | 114299 | 10470543 ~ 10471631 (+) |
| G154499 | NA | other | downstream | 156260 | 10512504 ~ 10516390 (+) |
| AMCG00005835 | LOC107586405 | other | downstream | 323693 | 10679937 ~ 10714707 (+) |
| AMCG00005834 | LOC108271164,LOC108430094,LOC107393192,LOC107719559,LOC107699414 | other | downstream | 365508 | 10721752 ~ 10736626 (+) |
