AMCG00005934


Basic Information

Item Value
gene id AMCG00005934
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10132128 ~ 10136716 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005934
TGCAGAATGAATCCATTACAGCTGGAAGAGAATGGCTATCCTGATCAGGTCATAAATATCGGACAAATAATACTTGGAGAAATAGCCAGGAAACGCATGCAGGCGAAGGATCGCGAAGTTCAGAAACGGCGAGTTTTGCAGGCCGCCTGTGCTTTGCTGAATTCAGGTGGAGGACTTATTCTCGCAAAAAGCAAGAACACAGAGTACAAATACCACGATGGCCTAGGCGGTGACATTGAGAAAGCATTGAGAGAACTTATTTTTCCTTCATCACTACAAGActattttgaatatttacaaCAAGGCATACATTTAATCGTTTTTGTAAAATCATGGTGTGCAGATAATACACAAGCAAGGATATGTAGCATTGATACTTCCCTGTACAGAAGGTCTGGTACTTCAACTGAAAAAGTTGCTCCTAGTGCATTTTCAGagctccaaaagaaaaaaaagcatagagcagaaaagagagagagaaaccaacAACCAGCAGTAAAGAGGCCTAACATAGAGCACAGAAGTGTAGATGAAATTGGAGCATCTGTTGAACAGTTCTGTAAAAAGCAACAAGTGGGACTCGGAGAGAAGTTAACTTTTGGTGAGACTGcaaatgtagaatttaaaagtTGTAAAGGAACAAAGTTGTCTAAATGGCTGGAAAGAGACCTTCGGAGGTATATATCTggctttaaaaatgcagatggAGGATTTCTGATCTTTGGTGTTGACGACCAAACAAAAGAAATTGTGGGATGTGGTAATAATGAAGCCAAACACTGCATTCAAGACAAAGTGCAGGCCATGTTTGAAAAGACTGTATCAGTTCACTTTGATCATTGTGACTCACAGAAGATGGTTCCTCCTGCAGTcttttttattgatgttttggaTGCAGAAGACCTCTACGTACTGGTTATAGAAAtccagccatcttgttgtgtggTCTTCTCCAAATGCCCAGACTCCTGGGTGATTGAAGATCAAACAATGAAGGAATTGGAAGCTGCAGTTTGGCTGGAAAAGATGTCCTGTACTGATCAAGTTGGAAGTGAAGGAATAAAGGTTACACCAGAGTCCATTACCAAGGACTTGTTTGAAAAGTTCCCAGGACTTGAAGGATTGAAGGATGCAGAAGGACATCATGGTGCTCTAATATTCTCTTACAGCTGGGCTGTTGACTTAGACACACCAAAGAATGAAAGTATTATCTGTGATGCTTTACTGATCTCTTCAGACAGGCATCCTATTTTTTACACAATTGTGAGAAAAGAAACTCCTGATTCCTGGAAATATGCGAGAGAGacagcttttcttttgaagCAAAAACTGGTGAATGTTGGAGGATATTCAGAGAAGACGTGTGTCATTCCAAAGCTAGTGGACTGCAACACAGGTGGCATAATTCCAAGAGTGAACAATCCTGTTGACAGTGAACAAATCTTGGTTAATTACCCTGATGGCTACATCTTGAGGGACATAACATCAGTGAAAGCCTTGCTGCGTGCCTTAGTGATTGTGTTGCTGAGCTTCAGCTCATTTCTGAGTGACCAACTTGGGAGCAAGTTCTTGAATTTGCTCACAATACAGCAGTTTGAGGTTCTCAACTATAAATACTGTTTCCAGGATTTCAAACGGCTCTTTGTTCATGGTTTACCTGGAACTGGAAAGACTGTCATTGCAATGAACCTGATGAAAAGAATTAAGAATACATACAACTGcgaaataaaaaatatccttTACATTTGTGAGAATCAACTACTGAGAGATTTCATGAGACAGAATATTTGCCAGTGCACAACACGCAAGTCATTCATGTCACCCTACAATGATTTTGCCGAAGCAGAGCACATCATTGTGGATGAAGCCCAGAATTTTCGTCAAGAGGACGGAGATTGGTATAAGAAGGCAGAAGGTATCATGGAGCGAGGAGAAAACAATGGCGTGTTTTGGATCTTTGTAGACTACTTCCAGAAGAGtcacacagaagcagatggtTTACCTGACGTTTTCAGACAAAACCATGTAATCTTAACAGTATGTGTGCGAAACAGCTTCAGGATATATAATGAagtttctaatttaattaaggaaataagCAGTGGCACAATTGGAAGACAGTACAGAGGCAGTATGAaagaacatttagaaaaaatcaCACGTAACTCTGTATGTAGTCACTCATTCCAAGGCacctacagaaaacaaaaagtaaaggAAATTGTCCCATTCATAGTTATGTCTGTTAACACTCTCTTCAGTAAGGGCTTTTTGCCAAGGGACATTGCTATTCTTCTTTCTAATAACCAAGAGCTTGAGGACTTCCGTAGAAGGTTATTGCAGCACAGCGATAAAAGTCTTCTTTGCAAATTTGCCACAGAAAGTGATGCACATGAAGACCTGATTGTAGTAGAAACCATTCGTAGATTCTCTGGCCTTGAAAGAAATATAGTGTATGTCCTCAACCCAAAGACCCACTATTGGCAACTAAACATACAACCAAATCTACTGGTTAGTGCTATATCAAGAGCACGTACACAGCTATACTTGGTGTACAGTACTTCTGAATAA

Function

GO: NA

KEGG:

id description
K24459 SLFN13; schlafen family member 13

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005934 True 2571 mRNA 0.40 3 10132128 10136716

Neighbor

gene id symbol gene type direction distance location
AMCG00005798 pitpnm3,LOC102785427 coding upstream 79319 10043818 ~ 10052809 (+)
AMCG00005799 NA coding upstream 99306 10020967 ~ 10032822 (+)
AMCG00005806 NA coding upstream 163981 9946752 ~ 9968147 (+)
AMCG00005807 med31,LOC107699947,LOC107599285,LOC107684212 coding upstream 188804 9941462 ~ 9943324 (+)
AMCG00005808 slc13a5,LOC106612936,LOC106581085 coding upstream 211058 9907846 ~ 9921070 (+)
AMCG00005928 NA coding downstream 70604 10207320 ~ 10218325 (+)
AMCG00005927 NA coding downstream 123933 10260649 ~ 10261465 (+)
AMCG00005820 NA coding downstream 275809 10412525 ~ 10416137 (+)
AMCG00005819 NA coding downstream 286393 10423109 ~ 10428966 (+)
AMCG00005817 cactin,LOC106600017 coding downstream 294847 10431563 ~ 10436502 (+)
G154388 NA non-coding upstream 52692 10078307 ~ 10079436 (+)
G154343 NA non-coding upstream 187985 9905772 ~ 9944143 (+)
G154252 NA non-coding upstream 690747 9440493 ~ 9441381 (+)
G154175 NA non-coding upstream 937941 9192296 ~ 9194187 (+)
G154147 NA non-coding upstream 1023758 9100429 ~ 9108370 (+)
G154447 NA non-coding downstream 148798 10285514 ~ 10332094 (+)
G154451 NA non-coding downstream 166241 10302957 ~ 10303497 (+)
G154473 NA non-coding downstream 283190 10419906 ~ 10489854 (+)
G154505 NA non-coding downstream 387251 10523967 ~ 10526052 (+)
G154574 NA non-coding downstream 439263 10575979 ~ 10576437 (+)
AMCG00005802 NA other upstream 42359 10065160 ~ 10089769 (+)
G154330 NA other upstream 248173 9881382 ~ 9883955 (+)
G154283 NA other upstream 542330 9587802 ~ 9589798 (+)
G154251 NA other upstream 693859 9435900 ~ 9438269 (+)
AMCG00005787 NA other upstream 1278028 8828578 ~ 8854100 (+)
AMCG00005929 NA other downstream 130557 10267273 ~ 10356244 (+)
AMCG00005851 NA other downstream 161173 10297889 ~ 10304909 (+)
AMCG00005821 NA other downstream 325821 10462537 ~ 10469406 (+)
G154486 NA other downstream 333827 10470543 ~ 10471631 (+)
G154499 NA other downstream 375788 10512504 ~ 10516390 (+)

Expression


Co-expression Network