AMCG00006058 (dda1)


Basic Information

Item Value
gene id AMCG00006058
gene name dda1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14765995 ~ 14778085 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006058
ATGAGACACCGAATGTCGTTTGTAACCAATGAGAGCGCACAGTTCCCGGGCAAGCTCAAGCAAATTAGGGCGGACTTCTTGAAGGGCCTTCCTGTCTACAACAAGAGCAATTTCAGCCGGTTTCATGCAGACTCCGTGTGCAAAGCATCGaacaGGAGACCGTCTGTGTACCTCCCCACACGAGAGTACCCCTCTGAACAGATCATCGTCACTGAGAAGACAAATATTCTCCTGCGCTACCTTCACCAGCAGTGGGACAAAAAGAACGCAGCCAAGAAGCGGGAACAGGAGCAGGGAGAGGGCGAGAGTCCCGCGCCCCCCAGGAAAATCGCCCGAACGGACAGCCAGGATATGAACGAGGACACTTAAACAGCCTGGGGCAGCGtgttacacactcacacacccactcacacactcactcactaacacgcacacatacagGTACACTTGTACAAAGGCGCatttacagacacacacgcacgcacgcacacacatcgACGGAGAAGACGGACAATGGGGGGAGAGGCGACCAGGACTTGGGAAGGACACCTAgcctaattttatttaattttttgttgtttttgttcctttctgGCTTTTTTGTGTTACTCTTTGCAAAGGCTTCCTGTCTGTGGTCTCTCACCCGCACTGCTCAGCTCTGGACAGAAGTGGGCGACGCATCACCCCACTCAACTACACTTCCTGTTGGACTCCCAGCCGTCCTCTCTCTAAATGGTTGTCACAGGAGAGCTACTCGGAAAAACCTCAACATTGTGtcagcatatatatacacttgtatatatgtatatgttttgtttcagttttgtttttttaaaccttgttTGCGTAGTGAAGGCTCGTGCTTGCTGTAGCAGATGTAGAGATTTGTGGtaaggtttttctttttgcgttttgtttttgacGTGcggcttttaatttaatcaagcTCAGGCTACGTAGATAAGTGTGCTGGGTTGTCTGTTAGCTTAGCTTGGATGTTTTATGACAAGGgggcaaaaacagaaaaggaggagaggaggcgGGGGTGAAATGTGAGGTGGAATTTGTTGCCAAACGCTTTTTGTTCGATGTAGTGAAAGACTGTTTAGCTCTTCCATAATGTCTGTGTTCATTTCTCAAATCAACCACACCATGGGAGACAGTCTGGATTCCTGGAGTCTTTTGATAAAAGCATGATCACCCCatctactttattttttattttttataccgACACCTGTATTTAAAGAGAGTACTGTGACAGAAATGTCCTGTGGGAGTTACTACTTTTTAATCTGGGGATTTTTGTGCTCCTCCGTTAGGTTAGACACTCAGATTAAACCTCTTGACTTTCGTGATGATCTGAGAAGTGTTTGCGAAGCTATCCTAAGGAAGCCGTATAGTAGATTTTGAAGCAGGTCACAAAGTGAGACTTGCTAATATGTGTTCCCACTGTAGTCAAGTCAAGGTTTCACTCCTAGATTGTATGATGGACAGTGGTGGTAAGGATGAGTAGAAGACCAATAGGATGCCTAGATCGTAATGTTACATGGACTTTGagtgacacaaaataaaaccagaagaTCCATGAAAGATGTGGCTGATTGGGAACATTCTCCTCATGACCGTGTTATCTTCTATGATCTTCTATAGTCTTTGTTTACAGTGACCTAAAAGTTACCAATGAATGAGTTCTTCACCTTCCAGTTTAGACCAACCTGGATCCCCATTCAACTCTTCAGCTTGGTCTCCTTCCTGAGCTCAGATCCCATCCTCACATCTGCCCTGATGTGCTGCGGCTGGCACAGACTGTTATTCCTTTCGGACGTTgacatttggttttaattgttttaggtCAAGCCCTTTCTCTTCGGAAGAATCCTAAGGTcgtgtgtaataataataataataataataataaagaaaaataaatggttgtaaatgtattcaatgtgtGAATCTAAAGATGAATATTGGGATTTGATGTTCAACGCCGCAGAGGATTATTGAAGTTTGGAGTACACCTGCTGGGCAATGCCTAGAGACTCCCAACGATCTGCACATTGTGCCTATTTATTTAGTGTGCGGACGGAGAGCCGAGACCTTCACGTTGTCCCAGACAGGTTGatttataattgattaattttaatattcagcCGACACTCACAGGCTAAAGGATGCAGAAGAAGGCATGCACCAAACTTGAAGATCTCTACACTTTGTCTTTGTGGTTGAACAAAATTGACATATTTCACCCTTATTAAATCCTTGATCTTGAGGTAAACGAATGCAGAAAACCCTAGAATTGTGGGATCCGGTACAGTGGATAAGAAGCTACCCCACCCTCTTAAACAGTAAGGAAGGATCCGATTTCCACGATCCCATTGAAGACCACCCTTTCAGCAACCTTGGACAGATCTTTAGAAGGCAGTTGCATTATGGCCAATGTGGTCAAAGCCCTATTTACCCAACCCTATCGATCATTACGCAAGAGCCTTGAATTCTCTTAGGTTGTGGGTTTTTTTCTGGTGGAAAAGGAAATTCTGTCAACTGACTCAAGTCCCAATGAAGTCAGAGCTGCTGGGCAAGAGTGGGATGGGCTTTTTGCTAAACTTGTCCTTTATGCAATGTTTGGGCTGTCGACTATATCATAGTAGTCATGGCtacttttaatttgtaatcCTAATCATGCCATACTGTTCCCATGGAGTATTTGAAGACTTCAGTAGTAGGTGGGAAGTGATTAGATCAAGCAGTGATTGGTGGTGGGGTCTTTGAGAGGCACGTTGGTGCTGATGTTCCAGGACTGTAAAAGTTCATTGTGCTTGCGTTCCATTGCAAGACAAGTTGTCTgcttcaaaatatgaaaaaatattatatttagatCTGCATTGGAGTCGGTTTTTGATTTCCTGTGCATGGACCAAAAAGCATGCAGTGGAAAAGCATTTTGGTTCCTGTAGGGAAGATTAAATGTTCTACTTTAGGGAAAATTATGATCTACATGGAGTGGTTTATGGGCCACTTATACCTCACCATTAATCCCATTCCCGCCCAAGAAGCTACTAGAACCTAAACTGTTCAACAAAGGCACAATCTGAGGACATAAAAACCAAAGTGGTTGAAGGGATCGCTGCTCTCCTCTTTACATCAAAGTACTTTTCTAAGCTGAGACTTCATGTGCAGTGAGTTGTAACTTCTGTGTGGCCCAGTTTCTTTTCCCAGGCCACTGAATACTGGATGATTATATGCATGAATAGCTGCAGGTTCTGGAGCCCATGAGAACCAATCCCATTGAATTGTGGTGACATTAGTTGTAAAGTCATTAAAGATTCAGAAGCAACATGGGAGGTACAAGAactctggggggaaaaaagaaaaaaacgcaATGGCGCTGCTAATCAGAAATGAGttgaaaacaaatgcaccaATCACATTTGATGATGTCACACTTAATGACTTACTCCTTGTTGGGTCTATGCTGCTATGAATAAAAAAGTAATCTGTTGCCTGTCTATATATTCGCTCTTAAGCACTGTGTTCCATGTTAGTTTGTGAAGCCTGTATATGCCAGGACTTAGCAAGCTTTTCCTGTAGAACGTCCTGTAGTCTTGAGTCTGAAAAGCACAACTCTGCTTGTCCGAGGCCCTGTGGTTCCTCTTGTCAGTACTCCAAGATGGGCAGATGCATAAATGATACCTAAATACAGTGCTTTGATAAGGTGAAAAGTGTATGTTCCAGTATAGAAGATCTGGGACTCTTTGCAGTAATCTGTAACTgctatattttctgtgtttctggaGTGAAGGAAAGAGTGATAAAGCAGATTTTATGTATAGCACATGTTTTGGCCTACACCAGTAAAAGACAGATGTACAGATTGCCACAGGACTGAATTCTGTGAGAAATCTTGAACAGCGTAACAATTAAATAAGACGAATAGTCATGAAAACCAGGCTGCCTGCAGGCTTTTACAGGGTGCACAGAGATGGCAATATGGGAAGAATGCAATACTCTATTTAGTTCACAAATACTCCGCTGTCTGCTCCTGCGTCAGTCTGTTACAATACCCCTTTCATCTGCGCAATGAACACATCAGAAGGGTGAATTGTTTGTGGCAAAACTGAAAATCtcaaaataacacagaaaagGCAAAGAGTTGATTCTGAGAAAGGGACGTTGTGTTTTCAATTCATGTTGGattctctctttattttttaagctgtGGATTCATTGCAGCATTCCAATGGTTCATGTTGTGAAACCAATCCAAATCTGAacattttttgttgctgttctgTTGCTGCTTTCCAAAATAATTTGCATGCTTTAAAGCACTAATTGACTTTAGACCTTGGATGCATggattgttaataataataataataataataataataataataataatgattaaagaaggaattcaaagcaaaacataGCATTTAAGCTGTGCGCAGTTAGAAAACCATGcacttctccaggaccagaatTACGGCCTGTCAAATGTCATCCCTACACCATCCATATCTAATTTAGTAGTTGCAGCCTTGCTCTGTGATGAAGAAGTGGAGTAGTGTGTAGTTTTTGAGTGGAGATTCCCCAAAAGATGTGGAAAGTCCAGGTCTTCCAAAGCTGTCTCCCAGCTGTGTGAGTTCAGGCCCACTGCAGCCTGCGCTTTCATCACCGTGATGTAAATAGTGTGGTGTGTTATTAGACACGTGTGAGTCTGcagggtttctgttttttttgttcccaaTCTGTGTTTATACTGATCTGGAAAGAACATTTCAGAtcttaactaaataaaattgttCTTACAATTGTGtacagaatgtgtgtttttaatgtttccagCTAATCAATTGATTAATATATTgattaatgcataatttatgtatactgaacaaaaatataattgcaaccTGTAAAGTGTTG

Function

symbol description
dda1 Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process and protein polyubiquitination. Predicted to act upstream of or within regulation of proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Orthologous to human DDA1 (DET1 and DDB1 associated 1).

NR:

description
DET1- and DDB1-associated protein 1

GO: NA

KEGG:

id description
K11792 DDA1; DET1- and DDB1-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006058 True 4938 mRNA 0.42 5 14765995 14778085

Neighbor

gene id symbol gene type direction distance location
AMCG00006057 NA coding downstream 47425 14705551 ~ 14718570 (-)
AMCG00006038 NA coding downstream 95640 14663558 ~ 14670355 (-)
AMCG00006036 NA coding downstream 103486 14660585 ~ 14662509 (-)
AMCG00006039 nduab,ndufa11,LOC106613708 coding downstream 114242 14647589 ~ 14651753 (-)
AMCG00006035 NA coding downstream 172625 14589371 ~ 14593370 (-)
AMCG00006045 LOC107575641 coding upstream 26660 14804745 ~ 14813651 (-)
AMCG00006047 NA coding upstream 72696 14850781 ~ 14851879 (-)
AMCG00006046 NA coding upstream 74072 14852157 ~ 14860735 (-)
AMCG00006044 NA coding upstream 88624 14866709 ~ 14875721 (-)
AMCG00006032 NA coding upstream 111055 14889140 ~ 14907158 (-)
G155783 NA non-coding downstream 196159 14569562 ~ 14569836 (-)
G155768 NA non-coding downstream 274066 14489290 ~ 14491929 (-)
G155754 NA non-coding downstream 341249 14422504 ~ 14424746 (-)
G155717 NA non-coding downstream 395813 14369761 ~ 14370182 (-)
G155703 tpm4,LOC107653617,LOC107757474 non-coding downstream 442881 14318979 ~ 14323114 (-)
G155899 NA non-coding upstream 202299 14980384 ~ 14981621 (-)
G155957 NA non-coding upstream 322224 15100309 ~ 15105533 (-)
G155989 LOC105900582,LOC107680261,LOC107709904,LOC107550622,LOC107688471,LOC107585101 non-coding upstream 400966 15179051 ~ 15217634 (-)
G156002 NA non-coding upstream 426784 15204869 ~ 15212286 (-)
G156003 NA non-coding upstream 429435 15207520 ~ 15318177 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other downstream 83015 14679797 ~ 14682980 (-)
G155770 LOC103376870 other downstream 256381 14509233 ~ 14509614 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other downstream 424392 14336891 ~ 14341603 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other downstream 594388 14159131 ~ 14171607 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other downstream 1067461 13664064 ~ 13698534 (-)
AMCG00006043 NA other upstream 4421 14782506 ~ 14784280 (-)
AMCG00006102 slc5a5 other upstream 220415 14998500 ~ 15007979 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other upstream 655347 15433432 ~ 15491642 (-)
G156206 klhl26,LOC107680559,LOC107597147 other upstream 1175991 15954076 ~ 15957090 (-)
AMCG00006083 NA other upstream 1676199 16454284 ~ 16462165 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003875 dda1 coding NC_007122.7 CM002895.2 5945186 ~ 5953648 (-)