AMCG00006069 (pgpep1,LOC103360783,LOC104958139)


Basic Information

Item Value
gene id AMCG00006069
gene name pgpep1,LOC103360783,LOC104958139
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15565462 ~ 15574687 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006069
gagagagagagagagacggaaagAAAGGGAGCGAGAGTCCGAGCCGAAACGAAAACGCCGACCGTCGGGAAgtgagagacggagagaaacCAGAGCTCGGGGTTGTCGGGGCGGGCGGACGAGTCAGAcactaaataaacacactgagaggattttgcttttctcttttcttttgtcGTCGAGCGTTATTGATCCGGGGGAAAGCATGGATAACAACAAGAGGACTGTTGTTGTCACAGGATTTGGACCTTTTGGAGAACATACAATCAACGCAAGCTGGGTGGCCGTACAGGAGCTGAAGAAGCTGGGCCTGGGGAATGACGTAGACCTTCATGTGTATGAGGTCCCGGTGGAATACCAGACAGTCCAGAGTTTGGTTCCTTCGCTATGGAAGCAGTATCATCCCCAGTTAGTCGTCCACGTTGGACTCTCGGGAATGGCTACGACGGTGACGCTGGAGAAATGTGGCCGTAACCATGGCTACAAAGGCCTGGACAACTGCAGCTTTTGCCCGGACTCGCAGTGCTGCGTAGAGGGTGGCCCGGACTGCATCGATTCCGTCATCGACATGGACTCCGTGTGCAAGAGGGTAACGGCGTTGGGACTCGGGGTGGCTGTTTCTGTGTCGAAGGATGCCGGGAGCCGTGGGCGCTCGGCCTTCGTACACGTGCCACCACTGGGCAAGCCATACAGTGGGGAGGCTCTGGGCCGGGCGCTGCAGGCAATCATTCGCGAGATGCTGGAGCTCCTCTCACAGGCGGAAGACAAGATCAACTGCCAGCATGAACACTGA

Function

symbol description
pgpep1 Predicted to enable pyroglutamyl-peptidase activity. Predicted to be involved in proteolysis. Predicted to be located in cytosol. Orthologous to human PGPEP1 (pyroglutamyl-peptidase I).

NR:

description
PREDICTED: pyroglutamyl-peptidase 1-like

GO: NA

KEGG:

id description
K01304 pcp; pyroglutamyl-peptidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006069 True 793 mRNA 0.56 5 15565462 15574687

Neighbor

gene id symbol gene type direction distance location
AMCG00006067 upf1,LOC105907049 coding downstream 6113 15544838 ~ 15559349 (-)
AMCG00006068 NA coding downstream 36138 15496753 ~ 15529324 (-)
AMCG00006082 NA coding downstream 76781 15483162 ~ 15488681 (-)
AMCG00006079 arrdc2,LOC106573914 coding downstream 85144 15469241 ~ 15480318 (-)
AMCG00006081 gamt,LOC107747770,LOC107597217,LOC107685360,LOC107553529,LOC107757934 coding downstream 164498 15397252 ~ 15400964 (-)
AMCG00006075 NA coding upstream 198991 15773678 ~ 15776508 (-)
AMCG00006085 NA coding upstream 203520 15778207 ~ 15784001 (-)
AMCG00006086 NA coding upstream 214660 15789347 ~ 15818856 (-)
AMCG00006087 NA coding upstream 266225 15840912 ~ 15877424 (-)
AMCG00006116 comp coding upstream 426866 16001553 ~ 16012344 (-)
G156049 NA non-coding downstream 133532 15427308 ~ 15431930 (-)
G156048 NA non-coding downstream 141612 15417978 ~ 15423850 (-)
G156028 NA non-coding downstream 197821 15366104 ~ 15367641 (-)
G156014 NA non-coding downstream 234916 15272813 ~ 15330546 (-)
G156003 NA non-coding downstream 247285 15207520 ~ 15318177 (-)
G156104 NA non-coding upstream 7170 15581857 ~ 15584766 (-)
G156113 NA non-coding upstream 40875 15615562 ~ 15615787 (-)
G156203 NA non-coding upstream 372521 15947208 ~ 15947527 (-)
G156207 NA non-coding upstream 420100 15994787 ~ 16000039 (-)
G156225 NA non-coding upstream 488046 16062733 ~ 16063072 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other downstream 73820 15433432 ~ 15491642 (-)
AMCG00006102 slc5a5 other downstream 557483 14998500 ~ 15007979 (-)
AMCG00006043 NA other downstream 781182 14782506 ~ 14784280 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other downstream 882482 14679797 ~ 14682980 (-)
G155770 LOC103376870 other downstream 1055848 14509233 ~ 14509614 (-)
G156206 klhl26,LOC107680559,LOC107597147 other upstream 379389 15954076 ~ 15957090 (-)
AMCG00006083 NA other upstream 879597 16454284 ~ 16462165 (-)
AMCG00006118 NA other upstream 930677 16505364 ~ 16521689 (-)
G156341 NA other upstream 1076853 16651540 ~ 16680772 (-)
AMCG00006127 NA other upstream 1373310 16947997 ~ 16963650 (-)

Expression


Co-expression Network