AMCG00006135 (sgta,LOC107656077)


Basic Information

Item Value
gene id AMCG00006135
gene name sgta,LOC107656077
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 17835894 ~ 17851971 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006135
GAACAAATCATCACTGATTTGTTTACCATCCCGTCGATCAACCGTTTCACCCGTTGATTGGTCGACAAATTCCGCTTTGCTGTTTTGCGCTACCCTATTGGTTAACTTCAACATCACCATGCCTTCAAAGGATTATGTAGGATTTAGCTAACTGAAACTCCGAATTTTTAAGAACATTCATACTAAAAAGCTAATCTTACATCAGTTATGCTGTTTTCATGTTATCCCTGCACACCATTTGTCTGAAATATAtcgttttgatttcttagatataatttttttgtaaattaggTTAGGTGGTAAAGTAAACCATTCACACCCGACGTGTGACGTAACGAGATACAGACGCATCCAGTGACTACGTCCTGCGAGGAAACTGCATAGAGATCCAAAGACAAGAGGTGCTCACAAACCCTACCTATTGACAGAGCTTAGCCCATCAGCCAAGAATGGCGGACACAAAACGTCTTGCATTCTCCATCATCCAGTTTCTGCATGACCAGCTGAACTCTGGAGGGCTATCCTCAGATGCACAGGAAAGTCTGGAAGTTGCAATCCAGTGTCTGGAGACAGCGTTTGGAGTTTCCACTGATGATCATAGCCTAGCAGTTACACAAACACTCCCAGAACTTTTTGCTGCAGCCACAATCAAGCCAGAGACTCCCCAGGTAATGATCAATGCCGTCCCAGACTCGCCAACAGAGGAGGAGGCAGCGGAGGCAGAGAGGCTCAAAACAGAAGGCAATGACCAGATGAAGGTAGAGAATTTCAGTGCAGCAGTTGAGTTCTATTCCAAAGCCATTGAAATCAACCCACGCAACGCAGTGTACTTCTGCAACAGGGCAGCGGCATACAGCAAACTGGGAAACTATGCTGGAGCTGTACAGGACTGTGAACAAGCAATTGCCATCGACCCCAACTACAGCAAAGCTTATGGTAGAATGGGGCTAGCTCTGGCtagtttaaataaacacacagaagcTGTGAGCTACTACAAGAAGGCTTTGGAACTCGACCCAGAAAATGAAACCTATAAGTCTAACTTGAAAATAGCAGagcagaaaatgaaagaaatgccAAGTCCAACAGGAGGAATGGGTGGAGTTGACCTGGCTGGATTACTTAGCAACCCTGGCTTTATGAACATGGCATCAAGTCTGATGAACAACCCTCAAGTACAACAAttAATGTCTGGCATGATGTCTGGAGCCTATGGATCAGTGGGAGCAACAGCAACAGGTGGAGGAGCAGGCCCTAACGATCTGTCCGGCCTTATCCAAGCagggcagcagttTGCCCAGCAGATGCAGCAGCAGAACCCAGAGCTAATCGAGCAGCTAAGGAGCCAGATCCGGAGTCGGACGCCCAGTGCCAGCAACGAAGAGCAGCCCTGACAGGCAGAGGGataaGTGTTTGTGTGCTGACTCTTGAAGACTCTTGAAGActgtccttgtttgttttttgttcaaaacCCCAATGAAAAACTCGTATTTTATCAAAAAGACATTGCATGTTGGGccccccttttttgtttttccatcccTGCTTCAAAACCAAATTTAAAAccacataagaaaaaaaaaatatgtaaatggaGGACAAGCCCCTTTTATCAAGATAGACTCCAAAAATGACCTCTGGATTCAAATGTTATTCACCTTTTACTGATATACATAATaccagttatttaaatgttgtatgtCAGTAATCCTAGCCAGTGGACTTTACAGTTGCATTCTGAATCCCTGACAGTTGGGTATTCTAACTGCAGGTCTATATGTGTAGCCTTATCCTTCAAGGTAAATGCATCCGAGTCAGGGAAAAGTGACATTTAAGTCTGCAATACTGAaggcatttatttatacaaatataaaataacaaatatgtgCAGAAATGTTGTCATCACTGGGAAATTAAATGGTGGAAACAAACTACATGTAGGTGTTGAATTCCTGTCATCCATTATCAAGGATAAAGTGCCAAGGACCTCATCTTGAAATCTGTTGAAGGGGCTCATTCTGGCTATGTGGGGGAGAGAGGTGTCTTTAAAACTGCCCATTGTGCCaaacacttctgttttgtttttgtttttcatttatttttgtctttgatttaaaAGATGATGTGAACCTCTGAGGGCTGAGATGACTACTTTGCTACAGTCCAAGGCAACACTAGTCCTTATTTTGTCAACTAAAGCCAGTGGCAGTCCGCTCTGGTCCTTGAATGCCTCAAGGTCTTCTGATTTTTATTCCAGGTGTATCCATCAAAAATCCAAAGTGGTAGCCATGGCAGATCAAAGGACACAAATCACAGTTTTACAGGTTTTATTGATTAAGTTCAGAATTAGTCAACATCAGGCTAGGCCACAAGTGATTTTCAAGTTCCCTGTCCAATTTGCCCAGAATCACCAGTttttatgaattgattaatcAATAAATCACGTGCCCAGGAATTCTGGTCCTAAAAGGCTAAAGGGTATACAGATGTTTGTTCTTCATTTATCTACATcaccaaatatttaaaatataatttcctaactgaaaataatacaatgtttctGTCTTcataaatttaattatttaaggaAGATCTATAAAACATGCTGGATTTGGCCTCCCCAGAACCGGGATTGCTATTCCTTGAAATGGACATAGTGGGACACAGTGTTAAAGACAGTGCTTCACTGACACTTGGTTAATTAAGCTTGACCAGAGCTCATCTCaacaaaaagtgtgttttcAAATGATCTCTAAATTATTGAGTTAACCAAAATGccacctgcttaattgagcAGTCTTTCCAAGTCTTTATAACTTGACGAGGTAAGTTGATTTAAAAGCTGCTGTATTACGGCTTTACAGAGCCAGGGTTGGATACCCTTGAGTTAGGGTTTAACCAGTGCTGAGCATACGGAGATCTAGAATTGCATCAAATAATTTGCTTGCCAGCATATACCTTGTTGATGTCAtcagtgtaataaaaaaaaaaaaatcatggataTCCAAACGCAGGTTATTATCTTCATGAAAATGTGCATGCAGTATATTCTTTTGATGACTACTCAGTTCACACTGTAATATGATTCAAAAATTGTACTGCATTCCTGTGTTTGaggtgcttttgaagaaaccAACAAACAGGCTGAAGgccctttttgtttatttcagtatgtttcacattaaaccaatttaataaaagtactttttttttttttttttttgtaacattttgcaCAGTAATGCATTCTTTTGTACTTCTCAAACAACTTGTGAAtgcaaatgtactgtatatggcAGGGTAGCCCACTGTTTCGCATTGAACACGTCAGACCATATCggggaattaaataaaattatgtatatcaaaatgttttaaatggtcAGCTTGACAGAATTCTGTTTTTGTCGCTGTAATACTTATTAACTTATTAGAAGCCCTTGTCATGGTATCAGTAGCCTAAAATAGATGGTGATCTGTTGACTTTGTTCTTGAGAAGGACTCACCAATTAAATACTGTTGTGAATAGAACAGCTTTACAAGCGGTAGGGTAGCACCATTTGGTTTTGTC

Function

symbol description
sgta Predicted to enable molecular adaptor activity. Predicted to be involved in positive regulation of chaperone-mediated protein folding; posttranslational protein targeting to endoplasmic reticulum membrane; and ubiquitin-dependent ERAD pathway. Predicted to be part of TRC complex. Predicted to be active in membrane. Orthologous to human SGTA (small glutamine rich tetratricopeptide repeat co-chaperone alpha).

NR:

description
small glutamine-rich tetratricopeptide repeat-containing protein alpha

GO: NA

KEGG:

id description
K16365 SGTA; small glutamine-rich tetratricopeptide repeat-containing protein alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006135 True 3571 mRNA 0.40 12 17835894 17851971

Neighbor

gene id symbol gene type direction distance location
AMCG00006134 slc39a3,LOC106573935,LOC106613601 coding downstream 9662 17817521 ~ 17826232 (-)
AMCG00006156 LOC108439652,LOC108264986 coding downstream 196912 17620883 ~ 17638982 (-)
AMCG00006154 LOC101067073,LOC104921817,LOC103368804,LOC108238466,LOC103137270 coding downstream 223516 17597722 ~ 17612378 (-)
AMCG00006155 mknk2,LOC107731184,LOC107695256,LOC107585877 coding downstream 248299 17567696 ~ 17587595 (-)
AMCG00006157 NA coding downstream 276926 17544506 ~ 17558968 (-)
AMCG00006192 NA coding upstream 54069 17906040 ~ 17934385 (-)
AMCG00006163 LOC101062949 coding upstream 132571 17984542 ~ 17998071 (-)
AMCG00006165 NA coding upstream 161836 18013807 ~ 18032169 (-)
AMCG00006140 gadd45b,ga45b,LOC106573930 coding upstream 589491 18441462 ~ 18444082 (-)
AMCG00006159 rfx2,LOC106584375,LOC106613840 coding upstream 785526 18637497 ~ 18668381 (-)
G156378 NA non-coding downstream 913031 16865098 ~ 16922863 (-)
G156344 NA non-coding downstream 1159847 16674798 ~ 16676047 (-)
G156228 NA non-coding downstream 1764366 16066669 ~ 16071528 (-)
G156225 NA non-coding downstream 1772822 16062733 ~ 16063072 (-)
G156207 NA non-coding downstream 1835855 15994787 ~ 16000039 (-)
G156668 NA non-coding upstream 280358 18132329 ~ 18137505 (-)
G156670 NA non-coding upstream 286548 18138519 ~ 18144775 (-)
G156696 NA non-coding upstream 581635 18433606 ~ 18434245 (-)
G156716 NA non-coding upstream 680091 18532062 ~ 18532447 (-)
G156717 NA non-coding upstream 681212 18533183 ~ 18538243 (-)
AMCG00006127 NA other downstream 872244 16947997 ~ 16963650 (-)
G156341 NA other downstream 1155122 16651540 ~ 16680772 (-)
AMCG00006118 NA other downstream 1314205 16505364 ~ 16521689 (-)
AMCG00006083 NA other downstream 1373729 16454284 ~ 16462165 (-)
G156206 klhl26,LOC107680559,LOC107597147 other downstream 1878804 15954076 ~ 15957090 (-)
G156907 NA other upstream 1423229 19275200 ~ 19293820 (-)
AMCG00006201 LOC105903982,LOC108433090,LOC106600049,LOC105020399,LOC107384124,LOC106569512 other upstream 1596960 19448931 ~ 19463205 (-)
G157059 NA other upstream 2857828 20709799 ~ 20712216 (-)

Expression


Co-expression Network