AMCG00006163 (LOC101062949)


Basic Information

Item Value
gene id AMCG00006163
gene name LOC101062949
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 17984542 ~ 17998071 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006163
ATGCAGAAGCAAATTCAACACACTAAACTCAGAACTCACTATAAACCCTGTTCATTTCAGATTCATGGCTGTGGAAAGCTAGCTGTGTCGGAATCTGAGAATATGGCAAACAGTTCAATTTCAGAAGCACCCAGTGACGCTGGAAGCAAAGTGGAAATGGTGTTCTGGCTGTTGTCTATGTTGGCCACCCGGGACCGGGAGGAGATGTCCCGTACTCTGTTGACCATGTCCAGCTCCCAGGAGAGCTGCTTGGCCATGCGCAAGTCAGGCTGTGTCCCTCTGCTGGTACAGATCCTACACGATGCGGCCGGGACAGGAGAGGTGGGGGCTGGGGGCAGTGGGGGCTGCAGCCGGGAGGCCCGATCCCGAGCTAGTGCCGCCCTGCACAACATTGTCTACTCCCAGCCTGATGAGGGACAGGCCCGCCGGGAGATGAGAGTCCTGCACGTCCTGGAGCAGATCCGCGCCCAATGCGAAGCTGGCTGGGACTGGCTGGAGAATCACTGTGGGCCCCAGGGGCAAGAGGAGTGCAAAACCACAAGTTTCTCCGCTGTCCCTGAACCAGTGGAGCCCCAGATCTGCCAGGCCATGTGTGCAGTCATGAAGCTCTCCTTCGAGGAAGAGTATCGCAGAGCCATGAACGAGCTTGGTGGTCTGCAGGCAGTAGCAGAGCTAATGCAGCTGGACCAGGAGCTCTATGGGATGCAGAATGACCCGCTCAACATGGCACTGCGGCGCTATGCGGGCATGACCCTCACCAACCTCACCTTTGGGGACGTGGTCAACAAAGCCACCTTGTGCTCCAAGAAAAGCTGCCTGCAGGCTATTGTTGCTCAGCTTGCATCTGACAGTGAGGAACTGCATCAGGTAGTCTCCAGTATTCTGAGAAACTTGTCGTGGCGAGCTGACATCAACAGCAAGAAGATCCTTCGAGAAGTGGGAAGTGTGACAGCGCTGATGACCTGTGCTCTACAGGCCACTAAGGAGTCCACTCTTAAAAGCTTGCTCAGTGCCTTGTGGAACCTGTCAGcacacagcactgaaaacaaGGTGGCTATCTgctctgtggatggggcattagGCTTCCTGGTGAGCACACTCACCTATAAGTGTCAAAGCAACTCTCTGGCCATCATAGAGAGTGGTGGGGGAATCCTGCGCAATGTGTCCAGCCTGGTGGCCACCCGAGATGATTATAGgcAAATCCTCAGAGACCACAATTGTCTACAGACTCTCCTGCAGCACCTAAGGTCCCACAGCCTCACTATTGTGAGCAATGCATGTGGGACTCTATGGAACCTGTCTGCTCGTAGCCCTAAGGACCAGGAGCTGCTGTGGGACTTGGGGGCAGTTAGCATGCTGCGCAACCTCATCCACTCCAAGCACAAAATGATCGCCATGGGCAGCGCTGCAGCCCTCAGGAACCTCCTCACCAATAGGCCCCTCAAGTACAAAGATGCTGCAGTCATCTCTCCTGGGTCCTGTATGCCTTCCCTATACATGAGGAAACAGAAGGCCCTGGAGGCTGAGCTGGATGCCAAACACTTAGCGGAGACCTTCGACTCCATTGAGAAGCAGCAGAGTCCCAAGCATCCCAACATCAACAAGCCACTGCGCCACATTGAGAGCCTGGCTAAAGACTACGCCTCCGACTCGGGCTGCTTCGACGATGACGAAGCGCCCCATGTCTCCACAAGCCTGGACACGGGGAGCTTCTCTATGCTCTCCATGTTCCTCAACTCCTCCAACTTCCTCCAAGGCCAGTCCCGCAAGAAGGGCAGTGAGCCTGAAAGAGACGTGGACCCGCAAGTTGAAGATGGCAAGAAGCTCCCGCCTGTGGATGATGAAGTATCTGTGGCAGCGGAGAAACTGGCCAAAAAGATCACCAACACAGTGGCCAAGATTGATAAGCTTGTGGAGGACATCACCATGCACACATCATCAGAAGACAGTTTTAGCCTTAGTTCTGAAGATCACTTTGTTGACTGGCACTATGGATCAGATGAGCTCCACGAAGCCAGGGCTAAGTCCTGCTCCCCCTGCCGTCTTTCAGACACCAGCAGCTTTGCCCGTCGAGAACGCCTCAGCAGGGCCCATGCTCTCCTGCGGCTCAAGACGGCTTATACCAGTTTATCTACGGACAGCCTAAACAGTGGAAGCACCAGCGATGGCTACTGTGGCAGCAAAGACCAAGTCAGGCCCTCTGCCAGATCGGCCACTGTGCAAAGGCGTCCCAACAGGTTGGATTTAAAGGTGGCCCAGCAAGGCTATATGGATAAGGATGACCAATGTGTTCCAACAGAGACAATCCAGAAAGATGTGAAGGAGAGGGGCTCTGAGAATAGTGGTGAAGTGGGCATGAAAAGCCGGAGGAACATAGCTGAAATTGAGAAAGTCCAAGAACCACCACCAACACCAGCAACTGTCAAACACTCTGAAGCCAGTGTGCCCACTATAAAACTCTCCCCCTCCTATCAGCATGTTCCCTTAATTCAGAGTGTGGCTAAGTTTGGTGTTCCCAGGAATCCCATTTCCTCTCAGGCAACTCAAGGGGTGAGGAGACAAGCCTGGATCCCCGCTGTACCAACAACTGGGAGCATAACCAAGATGTCTCCAATGAGCTCTGCCCGGAGCCCTACTCTTGGGCAGCTAGAGACCTTACAGAAGTACTCGGTTGAGAACACACCAATATGTTTCTCTCGCTGCAGCTCTCTATCCTCACTGTCCTCTGGGGATGGAGCTCTGGATGGGCAGAGTCAGAGTGAAAATGAATTAGAGAGTGACTCATCACTGGAGATAATTGAAGTAGAAGAATGTGATCTGGATAAAGGGCATGAAGAGAACTTGGAAGACTTCAGTGAAGGTCAACCGGTGGCCCCAGAGTTTGTCAGCACCACCAGCCCTACTTCCCAACCCATTGAGATCCCCTGCCCTGCCAAACGAGAAAAAGTCTTCCTGAGGGGGGTGTCTCCTGGCAGACATGAAGACATGACCCCATCCAGTTCTTCTGAAAACTACATCCATGAGACCCCACTTGTGATGAGCCGCTGCAGCTCTGTGAGCTCTCTTGGTAGCTTTGAGTCACCCTCCATAGCCAGCTCTATACAGAGTGACCCGTGCAGTGAGATGATCAGTGGCACCATTAGCCCAAGTGATCTACCAGACAGCCCAGGCCAGACCATGCCCCCGAGTCGCAGCAAGACTCCTTGTTGTGTAGACCCGAGTGGTCAGGAGACCCAGACTGGAGGAGGACAGTGGGAGAGTAACCTCCGCAAGTTTATGGAGATTGCCGACTTCAAGGAAAGGTTCAACTTGCCGCCAGACTTGGATACCATGATCTACTTTACTGTGGAAAAGCCCACCGAGAACTTCTCATGCGCCTCTAGTCTCAGCGCCCTGCCTCTTCATGAGCATTACATCCAGAAAGATGTGGAGCTCAAGCTGATGCCCCTGCTCCATGAAAAAGACAACCCTACTTTTagcacagcagagagagaagagatggGGGAAGAGCACCATCTATTTGGGCTTGAGAATCAGGGAGATGGATATGGGGAGGGCAACTCTGATGATGACATAGAAATCCTTAAAGAATGCATTAACTCAGCCATGCCTTCTAAATTCAGGAAGGTTAAGACTTCTTTGATGTCTAGCCTCTCTACCCAAGTCCTAAACTCACAAGCTCGAAAGTCTATGCAGCTGCCTGTCTATATGTTACTTCCTGCTCAAACCAATCAGATGTGTGCAGGGAGTAAGTCTGGAAGGCCTGATAAAGACTATTACCATGACGATTCCTCATTTACTGATTCACCTGAAGGCACTCCTGTGAATTTCTCAAGCACTACATCCCTGAGTGATGAAACACTTCAATACCCAGTAAAGGAGGAGAAAGGCATGAAGGACTGGCGGCCCCGAAGAATGGACAAACAGGACCTTATGGCTTCGCAAGCAAAGAGAATTGATGATCTCCGTTCCTTCTCCCAATTCCATAAGCCTGCCAAACTGCTTGGTCAGGCTGACACAGTAACTAACCAAGTAAACCGAGTTATCAAGAGAGTAATGCCCACACAAGGAGTGCAGCTGAACAATAAAGATGTAACAGCCTCCATTGCTCAGCTCAGAAGTAGAGAACATTCACCCAGTCATCTGATCCAAAGACGGGAGCAGAGCCAGCAAAGGAACATGCCAAAGCTAGACCTACCCATCAGGAAGCAGAGTGGAGAGATTAACCAGAGCCAGAAAACTATTTATGGAGAATATGTGCATGGTAACTTGGCATTTCAATCTATGCGTCACACAACACCCACTGAGGAAgccatttattgtttttatgatgaCCAGGTggacacaaagagagaggaagaaaggatTACAAACACTGGGAGAAAGCAAATTAAGGAGGCTAACAGGAATCTTTTGGCACATGCTGCAGCCAATGCAGAGAGGGGCCTTAATCTCCAGTCAAGGCACAAGGGTGTGTCTAATAAGATAAAGCACAATCTGATCATGGATGAGACACCACCTTGCTATTCCCTGAGTTCCTCTCTCAGCTCATTGAGTGATGCTGATTTGGACGAAGAACAAGGGAAAGCCCAGCAGATCTGGGTAAAAAACAGGCATCACATGGCTTCAATTCAGACCCGTGATGCAAAGAATAGCCGCAATCAGAATGATGAAGACAGCTCACCCAGCTCAGTCAGCCTCGACTCAGAAGATGACTTGCTGCAAAAGTGCATAACCTCAGCTATGCCTAAGCAGAGGAGGAGGCATTCGGCAAGGAAGAGGAAGGCTGAGAGGAAACAGAAACTGAAGAATAACATACAGAAAGCCATAGAAGGCTGGAACTCTGCAAGAGACCAGGAGAGTGATGATGTGGCATCAGATAAAGACTCAGACCTGAACAGTGTGGAGTGGAGAGCCATTCAGGAGGATGCCAATGCTATTGTCACACGACTGCAGGCTGCATCAAAATCCAGAGAGCTTTCTTCCGAGTCAGAGTCTGTCCTTTCTTTCATGTCTGGTGTGTCTGTTGGATCCAGCTTTCACATCAACCCAGAGAAGGGTGACAGGAGCAAACACATCAAAGAGCAAGGTAAGGGTAATAAAATGGCAGATGGCAGAAATTCCAAAGCCCAGCTAGATTTTGCCCAGCGCAAGCCTGTGCCAAGTTTACCTGTGGTGTTCAGGGGGAGAACAGTGATCTATATGCCAAATCCCAAAAAGGAGGTCAATAGCTCACAGAAGCCTACTCCGAAAAAGATGTCACCCAAGACTGAAGCTCCAGTAAAGAACCCAAACCTGGCCCAACAGAGGTCAAGGAGCCTGCACAGATTAGGACAGCCTAGTGATTCTACTGAGCTTTCCTTACCTAAAAGAAGTTCCACACCACCAGCCAGGATGACCAAAAGTACGTCTTCAGGATCATCCCAAACCTCCACACCATCCCGACAGCCACAAAAGAAACTAACCTCTCCCTTTCCAAACAGTAAACAGattccaaagaaagaaacaaagccaGTGAACAGCCTAATGGACAAGAAATCAAACCCAGCTTCTGCTCAAAAGTCCACCAATGTGAAATCTccagcacacaaaaaaacacagaagtcaCCTGTCCGAATCCCCTTCATGCAGACTCCTTCGAGACAGTCTATGCCTTCCAGGACTATATCCCCTTTGGTCACCAACCAATCATCGCCAAGCATTAgcagacaaaacacacaactatCAGGGAACAGAACCCGTCCTGCCAATCGTCTGGAGCTGGTCCGCATGACTTCTGCGCAGTCAAGTAGTAGTGAGTCAGACCGAAATGGTATCCTGAGGCAGCTGACATTCATCAAAGAATCTCCCAGCATGCTAAGACAGAGAAATGAGGTTCCCTCTTCCAGGTCTGTACCTACCTCCCAGTGTCCATCTCCACGTAAAACACGTTCAGGAGCCCcagctgtgtttctctgttcGTCACGCTGCCAGGAGCTAAAGGGTGCTGGACAAGGACAGAGACAAATGCAGACAAAAGTCCAGGGGCAAGGAACTGTCAGCCAGAATGCAACTCTCTCTAGAGCCAGTTCTAGTGACAGAAGCTTTTCGGGGACCCGTCCAGCCAGGAGAACCAGCTCCGAGAGCCCCGGCCGACTCCCTGAGAAGAACATTGCTGGAGCTTGGCaacgggagagagagaccttcAAGCGCCACTCCTCCTCTCCTCATATCAATGTGTTGAAGAGGGCCACCAGCCCTTCCTCTGTACTATCCTCCTCCTCTGATTCCAGTGGGAAAGCAAAGAGCGAAGACGGCAGTAAGACCCAgcaacaaagacaacaaaaacaaggatCTCGAGCAAATGGACAAATTACTTGGAGGAGGATTCGGGATGAAGACGTACCTCACATCCTAAAGAGCACCCTCCCATCCACTGCGTTACCACTGGTGCAGTCTCCAGAGGGGCAAAAGCCGATGCCTCCACTGCCTGGGAAGCTCCCAACCATCATGCtgccatcaaggaaaacaagTGATGCCACTGTGCAGACAGAGGACTTCACCATAAAAAAGACTAACTCCAGCACTTCTCCCACCATTGAGAAGGCTCCAGACTTCAGTGAGGAAGTAGCCAAGGCAGTTCTCATAAGAAAGATCAGCACAGCTTCCAGCAGCAGTGCGTCCATCCAAGAGGGCGATTTAGCAGAAATATCAGGATCCTTTAAGAGCCACAGTGGCCCAGCTTCTGCCCACTCTGTTGAAGGGCACAATGGGGGAATTGGTCACTTCCGTCATAGCTCTCCCAGCAAGGCTGTAAGGGTCACGCCCTTTAACTACATCCCCAGTCCCATGGCTTGTGGCTCACAGAGTGCGCAAATCCGTACCCCAACACTCAATGAAAAGCCAGGTGAAAAACTTGAAGCTTAA

Function

NR:

description
PREDICTED: adenomatous polyposis coli protein 2-like

GO: NA

KEGG:

id description
K02085 APC; adenomatosis polyposis coli protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006163 True 6909 mRNA 0.51 8 17984542 17998071

Neighbor

gene id symbol gene type direction distance location
AMCG00006192 NA coding downstream 50157 17906040 ~ 17934385 (-)
AMCG00006135 sgta,LOC107656077 coding downstream 132571 17835894 ~ 17851971 (-)
AMCG00006134 slc39a3,LOC106573935,LOC106613601 coding downstream 158310 17817521 ~ 17826232 (-)
AMCG00006156 LOC108439652,LOC108264986 coding downstream 345560 17620883 ~ 17638982 (-)
AMCG00006154 LOC101067073,LOC104921817,LOC103368804,LOC108238466,LOC103137270 coding downstream 372164 17597722 ~ 17612378 (-)
AMCG00006165 NA coding upstream 15736 18013807 ~ 18032169 (-)
AMCG00006140 gadd45b,ga45b,LOC106573930 coding upstream 443391 18441462 ~ 18444082 (-)
AMCG00006159 rfx2,LOC106584375,LOC106613840 coding upstream 639426 18637497 ~ 18668381 (-)
AMCG00006158 mllt1,LOC106584372 coding upstream 751763 18749834 ~ 18762648 (-)
AMCG00006160 mllt1,LOC108432507 coding upstream 776854 18774925 ~ 18780393 (-)
G156378 NA non-coding downstream 1061679 16865098 ~ 16922863 (-)
G156344 NA non-coding downstream 1308495 16674798 ~ 16676047 (-)
G156228 NA non-coding downstream 1913014 16066669 ~ 16071528 (-)
G156225 NA non-coding downstream 1921470 16062733 ~ 16063072 (-)
G156207 NA non-coding downstream 1984503 15994787 ~ 16000039 (-)
G156668 NA non-coding upstream 134258 18132329 ~ 18137505 (-)
G156670 NA non-coding upstream 140448 18138519 ~ 18144775 (-)
G156696 NA non-coding upstream 435535 18433606 ~ 18434245 (-)
G156716 NA non-coding upstream 533991 18532062 ~ 18532447 (-)
G156717 NA non-coding upstream 535112 18533183 ~ 18538243 (-)
AMCG00006127 NA other downstream 1020892 16947997 ~ 16963650 (-)
G156341 NA other downstream 1303770 16651540 ~ 16680772 (-)
AMCG00006118 NA other downstream 1462853 16505364 ~ 16521689 (-)
AMCG00006083 NA other downstream 1522377 16454284 ~ 16462165 (-)
G156206 klhl26,LOC107680559,LOC107597147 other downstream 2027452 15954076 ~ 15957090 (-)
G156907 NA other upstream 1277129 19275200 ~ 19293820 (-)
AMCG00006201 LOC105903982,LOC108433090,LOC106600049,LOC105020399,LOC107384124,LOC106569512 other upstream 1450860 19448931 ~ 19463205 (-)
G157059 NA other upstream 2711728 20709799 ~ 20712216 (-)

Expression


Co-expression Network