AMCG00006165


Basic Information

Item Value
gene id AMCG00006165
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 18013807 ~ 18032169 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006165
ATGAAGATGTCCAGCTCTGCGGCTTCGTATGACCAGCTGGTCAGGCAGGTGGAGGCTCTGAGGAAGGAGAACACACACCTGCGGAGGGAACTGGAGGACAACTCCAACCACCTGTCCAAGCTGGAGAATGAAACCTCTGACATGAAGGAGGTGCTGAAGCAGTTGCAGTGTAAACTCGAGCAGGAGGCTCGAACTTTGGCCTCTTCTGGGAGGACTGACGTTCTGGACCAGCTCAAAGAACTGCATATGGATTTGACAAACTATTACGAGCTGAAGTACCAGCCACACAACCTGCGAGTGGTCCAGGAGAGTCTGGGGCCTCAGGCCAGTGAAGGGGAGGATAGACTCCCCATCTCTTCCTCTGAAGTGGGGAAGCAAGGAGACAGGAGTCCTCTCCATATTGCTGCCCGACAGGGGGCTCCCCTCCTGGGTGAGGGGGCTGCACTGCACCCAGGACCCCCACACATCCTGGATGGGGGCTTGCAGAAATCGGGGGTCTGTGGGGAAGCTCGGGTCACAGCCCAGCACCTGGAGGAGCTTTTCAAAGAGAGGACCATGCTGCTGAGCGAGAttgagaaggaggagaaggaacGGCGATGGTACTACTCTCAGCTGCAGGGACTCTCGCAGCGGCTGGCTGAACTGCCCCGTATTGACACTTTCTCGATGCAGATGGATCTGATCCGTCAGCAGCTGGAGTTTGAAGCCCAGCAGCTGCGCTCGGTCATGGAAGAGCGATTCGGGACCAGTGACGAGATGGTTCAGCGCACTCAGATTCGAGTGGCTCGACTGGAGCAGCTGGAGAAAGAGCTACAGGAGGCCCAAGAAACGCAAGAGAACGTCCTACAACCAGAGAGTCAGGTGAGAGCAACACAGATTCTCCATCAGTGTAGAAGAAGAGAGGAGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006165 True 909 mRNA 0.56 6 18013807 18032169

Neighbor

gene id symbol gene type direction distance location
AMCG00006163 LOC101062949 coding downstream 15736 17984542 ~ 17998071 (-)
AMCG00006192 NA coding downstream 79422 17906040 ~ 17934385 (-)
AMCG00006135 sgta,LOC107656077 coding downstream 161836 17835894 ~ 17851971 (-)
AMCG00006134 slc39a3,LOC106573935,LOC106613601 coding downstream 187575 17817521 ~ 17826232 (-)
AMCG00006156 LOC108439652,LOC108264986 coding downstream 374825 17620883 ~ 17638982 (-)
AMCG00006140 gadd45b,ga45b,LOC106573930 coding upstream 409293 18441462 ~ 18444082 (-)
AMCG00006159 rfx2,LOC106584375,LOC106613840 coding upstream 605328 18637497 ~ 18668381 (-)
AMCG00006158 mllt1,LOC106584372 coding upstream 717665 18749834 ~ 18762648 (-)
AMCG00006160 mllt1,LOC108432507 coding upstream 742756 18774925 ~ 18780393 (-)
AMCG00006171 NA coding upstream 782248 18814417 ~ 18821406 (-)
G156378 NA non-coding downstream 1090944 16865098 ~ 16922863 (-)
G156344 NA non-coding downstream 1337760 16674798 ~ 16676047 (-)
G156228 NA non-coding downstream 1942279 16066669 ~ 16071528 (-)
G156225 NA non-coding downstream 1950735 16062733 ~ 16063072 (-)
G156207 NA non-coding downstream 2013768 15994787 ~ 16000039 (-)
G156668 NA non-coding upstream 100160 18132329 ~ 18137505 (-)
G156670 NA non-coding upstream 106350 18138519 ~ 18144775 (-)
G156696 NA non-coding upstream 401437 18433606 ~ 18434245 (-)
G156716 NA non-coding upstream 499893 18532062 ~ 18532447 (-)
G156717 NA non-coding upstream 501014 18533183 ~ 18538243 (-)
AMCG00006127 NA other downstream 1050157 16947997 ~ 16963650 (-)
G156341 NA other downstream 1333035 16651540 ~ 16680772 (-)
AMCG00006118 NA other downstream 1492118 16505364 ~ 16521689 (-)
AMCG00006083 NA other downstream 1551642 16454284 ~ 16462165 (-)
G156206 klhl26,LOC107680559,LOC107597147 other downstream 2056717 15954076 ~ 15957090 (-)
G156907 NA other upstream 1243031 19275200 ~ 19293820 (-)
AMCG00006201 LOC105903982,LOC108433090,LOC106600049,LOC105020399,LOC107384124,LOC106569512 other upstream 1416762 19448931 ~ 19463205 (-)
G157059 NA other upstream 2677630 20709799 ~ 20712216 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000058_00599524_00634109 APC2 coding CI01000058 null 599179 ~ 634109 (-)