AMCG00006192


Basic Information

Item Value
gene id AMCG00006192
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 17906040 ~ 17934385 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006192
CAAGGAGCAGGCAAGGAAGCCAGTAGAGGCTTTGGTGGACTGTAATGTCTGATAAGACTCACCCACAGCCCCTTGACATCTCCAAAAAGCACCATGAAAGAAACCATGGCAAAGAAAGGGCCTGAAACTCTGAAAACAAACCGACtcattaaatacacattgtttGCCTGTTGCTATCTCTTCTGgGTTGCCAGTGCTATATTGATTTGTGTGGGAATCTATGCAAAAACTGCTAAGGAAGGAGGTGTTGTGGACTCCCTCATAGCTGACCCCGCATTAATGTTGATAATTGTTGGCAGCTTAATGTTCATCATTACTTTTTTTGGATGCTTTGGAGCTCTAAGAGATCTAACCAATCTACTTAAAGTTTTTGCAGGGATCTTGGGGATCATTCTCATTCTGCAGATCACAGCTGCAGTCCTTGGATTTCTATTTTCAGACTTGGTACTGGATAGAACAGAGCAACTAATGGGAAGTGAAATCAAACTATACCGGGATGACATGGACCTGgaaaatattattgattttgttcagAAAAAGTTTCAGTGCTGTGGCGTACAGTCATACAAAGACTGGTCCATGAACATGTACTTCCAGTGTGAGGACACCAACCCCAGTCTGGAGCGCTGTGGGGTCCCCTTCTCCTGCTGCATCAGAAGGAAAAATGAGTCAGTCCTCAATACAATGTGTGGTTATGGGGTTCAAAGTCAGAAAGAATGGTCTGCAAAAGAGAACATTTACACCGGTGGCTGCCTGGATAAGATAGTGAAATGGGGAGAGCAAAATCTTCTCATCATTGGAGGAATAACCATTGGATTGCTCACTCTTGAGATTCTGATGATCATCTTGGCTGCAGTCCATATCTGTCGAATCATGAACGTTCAGCAGACACGAAATAACAACAGTGGGGGGAAATAGCATACAAAGCAATATGCAATATGGAGGGCCTCAGTCATGATACTGTACATGCCAGTAGGACTTTGCAAGTCTCTGTCtattacagtaattattttgttatgagtttttatatattttgccttgaaaaatacattttggctGTTTCATGAATTTGTCAGAATAGTATTGATAGTGAACACTCATTATTCTACAAAGAAATATTCCCAAGCAAATCACAAGAAAAGAttcacacaatatattttactacattattttaaactgtaaatactgtatatagaaaTGCTAATACATTTGATATAGTAATAACTACAACTGTGCTCTGGCTGCATTATCTGTAACTGTGAACATTTCCCCTACAAGTGTGAAACATTTCGTACATTTTGCTGGTCTGCAACACAGTCCTGacaaaatgtacctttattttaagtaaatatgaggtcaaaaagtgttacagttgaacagatgtgtcttttcttttttgccttttcattAGTAAAACTGTATTCCTGCTCATTGTTGGGATATTTAAGTCTTAAATACTCACATATTGACCAAATTAATTACACCtcttttttgtgtataattacactggattctaatatacatttaatgtgtgctttgagagaaatacaaatgcacttacaaatgcatgtaacacatggaaattgttataatgtatacatacaccactaaaacatgcatgttattttattgatgagctgacaaactttgaaatattatatttctgttatacTTTGCCATATGTACACTGAAATCCATAAGATCATGCCCTTGAGGCAATTCAGTGCTCCTGTTTAGGGGGGCGATCGCACATGCAGTGAACTTTGTCTCTGGAGATACACACGTGTTTGTGACACAGCGTTCGTTGATTGTTTTGCAGCCACGGCGCAGTGCCTCTTGGTAAGCTGCGCAGCTGTGCGCACTTTGTAGCCTGTGGCTGCGTCGCCTGGTGACGTCTGTTCTGGCAGCGTACATGCAGACGCAGAACCTGGACAGTTTGTCACAGAGTATGTGAAAAGTCTGCGCAGTCTTACGACACAGAGTAGATAGCTAACCCTACATGCTTGCAATTTAAAGACTTACTCTCAGGAAAAGTTTACCGATAAAAAATCGTTTCATTGTGGTTCcaactgtgttgtttttacttttgttattcAGGTATGTAAATACGGAACAAATAGTGTTCCgtattgattttaaacagaacaaagaaagaTTCCGTATTTTACGGAACAGGTGGCAACCCTAGTATTGATAATCACCTGATTGATATCATTATTTACGaaatcagattttttgttttctcacctTATACAGAGGTGGCAATTGAAGAGCCAGGGATTGACCCAGTTGTTCTCTCACCCTCTTACTTCCCACTAGTCTAGTGTGCCTCTTTTTCACACAGTTGGTTGGCACTGAGCAGGGTGAATAGAGTCCAGATTTCAAAGTGACAAGTTAAATGTTTGGGCAATAGGTGGGCTCAtagattgtattaattattaacaaacATCTGGTTTAACATAAGGTGTTACTTAAGCTGTGATTTTTATGTTCTTTATCATATTGTGTTCATAGGATTTTTTTCATAGGCATTTTGTGTTCGTATGCTTTCTGCAAAACTCTGATGCAGTACTCCCATACTTGTCATAAGATCCTGCATCAGGACATTCAGACTCTCTAAAACCCATTCAGACTCTGTAACCCAACTGTACAAATGATTATATTACAGTGAGAGATGGTCCACTAATTCTAGGaaacaataaatgcatgtttggaAAAGCCCtctaacatgtttttatttttattttttctgtttaacaatatatatttttaagaatccCCAATATGCATTAAACCCTATGTAACTGTGCCTTTCCTGGTTAcgtttttccttcattttaatgGTAACCCAATTTTGTTATACTTTTGGAGAATCTGCTTGACATAATTGTTGGTGATattaaatcatggaatcattcaTTTTTTCCCAGTGGAACTGATATCTTCTAAATATC

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006192 True 2954 mRNA 0.38 8 17906040 17934385

Neighbor

gene id symbol gene type direction distance location
AMCG00006135 sgta,LOC107656077 coding downstream 54069 17835894 ~ 17851971 (-)
AMCG00006134 slc39a3,LOC106573935,LOC106613601 coding downstream 79808 17817521 ~ 17826232 (-)
AMCG00006156 LOC108439652,LOC108264986 coding downstream 267058 17620883 ~ 17638982 (-)
AMCG00006154 LOC101067073,LOC104921817,LOC103368804,LOC108238466,LOC103137270 coding downstream 293662 17597722 ~ 17612378 (-)
AMCG00006155 mknk2,LOC107731184,LOC107695256,LOC107585877 coding downstream 318445 17567696 ~ 17587595 (-)
AMCG00006163 LOC101062949 coding upstream 50157 17984542 ~ 17998071 (-)
AMCG00006165 NA coding upstream 79422 18013807 ~ 18032169 (-)
AMCG00006140 gadd45b,ga45b,LOC106573930 coding upstream 507077 18441462 ~ 18444082 (-)
AMCG00006159 rfx2,LOC106584375,LOC106613840 coding upstream 703112 18637497 ~ 18668381 (-)
AMCG00006158 mllt1,LOC106584372 coding upstream 815449 18749834 ~ 18762648 (-)
G156378 NA non-coding downstream 983177 16865098 ~ 16922863 (-)
G156344 NA non-coding downstream 1229993 16674798 ~ 16676047 (-)
G156228 NA non-coding downstream 1834512 16066669 ~ 16071528 (-)
G156225 NA non-coding downstream 1842968 16062733 ~ 16063072 (-)
G156207 NA non-coding downstream 1906001 15994787 ~ 16000039 (-)
G156668 NA non-coding upstream 197944 18132329 ~ 18137505 (-)
G156670 NA non-coding upstream 204134 18138519 ~ 18144775 (-)
G156696 NA non-coding upstream 499221 18433606 ~ 18434245 (-)
G156716 NA non-coding upstream 597677 18532062 ~ 18532447 (-)
G156717 NA non-coding upstream 598798 18533183 ~ 18538243 (-)
AMCG00006127 NA other downstream 942390 16947997 ~ 16963650 (-)
G156341 NA other downstream 1225268 16651540 ~ 16680772 (-)
AMCG00006118 NA other downstream 1384351 16505364 ~ 16521689 (-)
AMCG00006083 NA other downstream 1443875 16454284 ~ 16462165 (-)
G156206 klhl26,LOC107680559,LOC107597147 other downstream 1948950 15954076 ~ 15957090 (-)
G156907 NA other upstream 1340815 19275200 ~ 19293820 (-)
AMCG00006201 LOC105903982,LOC108433090,LOC106600049,LOC105020399,LOC107384124,LOC106569512 other upstream 1514546 19448931 ~ 19463205 (-)
G157059 NA other upstream 2775414 20709799 ~ 20712216 (-)

Expression


Co-expression Network