G151957


Basic Information

Item Value
gene id G151957
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 242154 ~ 332344 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU191322
tatatatatatatatatNNNNNNNNNNNNCCAAGAGGACGGCACCCAGTCGTTGCCCATGGGGCGTGTGTCTGTGGCTGTCGGGCCAGAAGGGGCGTCTGTTGTTACCCGGTTCcttattttattccattcacACAGATCTCGTGTTGCTTCGAAGCGCTGCCGGCACACGCCAGTGGCTCCTGTAGCGCTGGACTCGGATGAGATCTGCTGTCTGTACCTGAAGGATAAACATGTTCAGTTCTGCTTGTTAAGGGTTTGATCTGTTTTATTCGTCTGCACTTTTTCCCCTGCTTTTTATGTCAAAAAAGATCCTCAATTGAATGTAACTCGATGGCCGAGTCTGACGGATGCTCGGTGGCTGGAGAACGTCTGCCCGTTGTGTCCATTAGAGTCACAAGTGTGTTTGTCATTGAAAGTATGGTGTACGTTTATTTTAGTGACTTACAGCTGATGAAATACTCGTTAATGAGGCCCTGCGTCACGATGACGGTCCTGTGACGTATGAGAGCTCTGCACCTGTGTTGCGAAGGAGATGGGCTTCCACTCTTAGATGGGGCACTACGTCCTCAAACCTCAATCCAGACGCTTGTAGCTTCGTCTTTTCTTCATTGCCGTCGATGTTCTTCCCTCTCTGATCCGGGGAAATCGTATCTGCAGGTTTGATTCTGGCTGTCCTGCAAGGCCTTGTGATCTGTTGTGCGAAGGCAGGTGTAAAAAGTCACGTTCGGACCTTAAAGAGCTCTGCACTGCAGACGCAATAAACACAGCCTGTACAAACCACACATGTGACGCTGCAGCCCTGTCCGGCGGCGCGAGGATCCGGTCGTGGGCCGTCTCGTGTCTCCGCTGCGGCTCTCGCTTCTGAGACAATAGCGTGTCGTCTTTTAGCAAAACCGTTTACCTGTTTATTCATTCAAGATCTTTTGTTTTCCAAGGTGATTGCCTTAACAAGGCCTAATATTGAAATTTCCAGCCTTGAGTTGAAGTCACGAGCGAAGAAATGGAGGGGTgtgaaagattattatcGCAGTCCTCCCTGGATCGCCTGCCGGTTCCCCTTGAGAATCCCACGCCTGCACCGCACACCCAGATTCACCTCACGGGTCATATCTGAGCTGTGTCAAGTCCgtctttgtgtgtctggttTAAAGCGATGGAGCAGGGTCTCGTTCTGTAGCGCGGGGGGGGAGTTGGAGACGCAGCTCGCTGTAGCGAACCGTACATACGGGTCAATCTGAGCGACCTGTACGAGGGGCTGGGGAGTGTAGGGCCCTGCACAGCCCTGCCCTCGTGTAGAACCAGTCTTGCATCGcggtgggggggcagtgtctTTTCCGAGCCCCGTCTGCAGATCTGATTTAACCAGGTGGTGCAGAACAATGTGAAATGGAAGTTGTAGCAGCTTGCTTTTAAACAGACCGGAGATGATGTAACATTTAACCTTGATATTGTTGCAGTAGAGAAATAAGTTTCCTTTgggtttaaatgtgtatgtgttgtggCAACGGATGCCTCGCTGTCCATGTAACTCCCCCGCAAACTAAGAGTGCCAAAAACAGCGCGCCGGAGCTGGCGCCCCTCACCTGCGCCTTGATGCCTTTGTCCATCAAACTGCCCTGGCTTGTAAATAGCGCTTGCGTTGGAAAGCATCGACAACGGTCCGAGCCCTGACGACCGAAAGATTTCCTCAATAAAACATCTGTTAGCAACCCGAAGAGCGTCTGCTTTGTTCACCGGCCGCCTGTGTGTGACTGTAAACGCCAAGACAgagaatatattaaattaaagtggGAAAACAACTGAGGTTTGGAGATGTGATGTGCGCTGGCCTGTGACTGCAGGGGCTGAGAGACTTCACCTCTGTGTGCATGTCTCTCTGTCCGTCGACTCTGAGACACTGAGCTCAAACGCACTGACGTTGCTTCGCTGCCACTGCTTGAGCCCGCAGTCGCGCCTCGGGGGGGTCTGCTGGTGGTTGCATGCTGCGAGTTGTGCAGGAATCACTGCAAGCTATCACTCGGTTCAacagaaaatcaataaaatgcattatctggccagtcttttaaaatgaatacatggttttgtttttgcacttaAACCTTTTTTGTCTCCTCTGCTTTTGGAGGCACTTAATAGACACCCCTGTCAACAGCAAACTAACGTGATGTTTGTGTCGGCCCGGGTTTGTCTTTTGGGCAACCAATGCGATATTGAGCAGACTTTCTGCCGCTACGTTTGCTCCTTTGCATTCTCTTTTAGGACTACTGTAGGAAACAGATCTCTTAAATTCAGTGTTGATTGTCCCACGAGTCCACAGCTGCACCCCTGAGAGCATTTTCTATAGAAATGCCAGcgtgcagtttttaaaagtaaaacaattacacacacagtgTTGGTAATTAACTGATAAACACAGACGTGGATTCTAGTTCTTCAATCCCTATTGCTCAGCTTTGTGTGGAGatttaggtgtgtgtgttgggtgttTTGCAGTCTGCACACTCCAGTGTCTTCAACATGAAGATGCATCTTAAACACACAGCCCAAGAGCAGGGCGAGGGAGTGCCAGCCTTCATGCCAGTCCCCAGAAACAGCCCTGTTCCCCCGTTACACGTGTTCAGTAGCGGTTTGCAGTCACACAGACCACACCGCACACCATCTGTCTGCTTCCTGTAGCGCCGTGTTGATGGTGTCGACGGGCGCGTGGGTGAAGACGCCAGCTGTGGTTAAacgaggggaggggaggggggttcgGTTCGGTCCTGGCTGTTGACTCGCCTGTCTTGCTGCATGATTGTAAATGTGAATAACAGCTGATCTGTTTCCAGTGATGACAATCTCTCACAGATTGAGTTTCTGTgctgtttgtaaaatgtgcgtctgcttttctgaataaaagaaggaaagagaaaCGCGCAGTGGTTCAGATTTCAGAGTGCAGCGCGTTGGCACGGGGCCTGCGCGGCTCGACTTGCCGATCTGATCTCACGGAGACGCAGTTTGATTATTGTTGATTGCTGGCAAACAGTTGGGACTGCTTGAGCGAACAGCCGCTCATCCCGTGGGGCTCGTCTGCTGGCCGTGTTTCCAGACACGCTTTAGACGTCGGCCTTAGAAATGGGCTTAATCACCaataaactgcaaattaaacaactgaaaatgtttccCAATGAAAAGCTGTATTGGTTGTTTTAACACAGCTCACAAACATCCACAGGAGTTGAGGGGGTGCATGTCTTACACTAATTAACCAGAAAGGGCAGAGGCGAGGGAGGGGGCACACAGTTTAATAATTGCTacagtaatttaataattgCAGATTGCTGCACAACAGATTGTGTTGTATGGGGAGACAGATCCCATCATTCACTTTTGCACAGGTCTTGCTCATGTCCTCTGGTCTCCACCGGTGTCTCGGACGCCTCCCAGGCCCTCGCAGCGTCCACAGGGCCCGGCATCACGGGCAGCACAGACCCGCGTGTGCATGGCATCGGCTTCCCTCCCCTGGCGTGACGCAGCGGAACAGAGCAGGCGCCCAGTCGAGCGCTGAGACGGCGCTGCGAGTCTGGTGTCGCCCTTTATGGGCATCAGTCACGGCACCTTGGTATCGCCCGTCTGTCAGAGAGACGCCCCGAGGACAGTCCCTGTTCACCTGCACTGGCCTGCGTTAATTTGTCAACTAACCACACGCAATCGCAGTGACGTGCGACACTTTAGTGCAGCTACACACAACAACAGACTGCATGATCACACGTGAGCAGGTATCCCGACCCAGGTGGAGTGACTTCAATTTCACACCTTCGGGGAACTCCTGGGTTTCATATtgaaattataattgtgttgcttCTGTGCGTCCATGTCTTTCATCCAAAaggcatttgcatttaaataaactattgcAGACCAGCGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191322 True 3913 lncRNA 0.50 3 242154 332344

Neighbor

gene id symbol gene type direction distance location
AMCG00005396 NA coding downstream 9779 227258 ~ 232375 (-)
AMCG00005401 doc2b,LOC107681901,LOC107685552 coding downstream 91040 148035 ~ 151114 (-)
AMCG00005398 NA coding downstream 135656 104130 ~ 106498 (-)
AMCG00005397 gatsl2,LOC106567563,LOC106603747 coding downstream 151771 80442 ~ 90383 (-)
AMCG00005406 NA coding downstream 180831 54208 ~ 61323 (-)
AMCG00005391 NA coding upstream 18421 350765 ~ 375012 (-)
AMCG00005387 tmem132e coding upstream 66576 398920 ~ 400797 (-)
AMCG00005388 NA coding upstream 538813 871157 ~ 873005 (-)
AMCG00005454 NA coding upstream 639327 971671 ~ 973719 (-)
AMCG00005474 NA coding upstream 682308 1014652 ~ 1021117 (-)
G151903 NA non-coding downstream 205759 35722 ~ 36395 (-)
G151901 NA non-coding downstream 209343 31994 ~ 32811 (-)
G151891 NA non-coding downstream 221598 20300 ~ 20556 (-)
G151970 NA non-coding upstream 14653 346997 ~ 350322 (-)
G151972 NA non-coding upstream 45011 377355 ~ 377713 (-)
G151979 NA non-coding upstream 358315 690659 ~ 690942 (-)
G152071 NA non-coding upstream 666010 998354 ~ 1009739 (-)
G152085 NA non-coding upstream 733115 1065459 ~ 1070656 (-)
AMCG00005400 doc2b,LOC105895337,LOC107681901 other downstream 121607 108398 ~ 120547 (-)
AMCG00005399 NA other downstream 142484 94352 ~ 99670 (-)
AMCG00005407 polr2j,LOC107587688 other downstream 175121 62355 ~ 67033 (-)
G152133 NA other upstream 886983 1219327 ~ 1335440 (-)
AMCG00005419 NA other upstream 1038998 1371342 ~ 1376473 (-)
G152277 NA other upstream 1173596 1505940 ~ 1507628 (-)
G152271 NA other upstream 1189398 1521742 ~ 1615497 (-)
AMCG00005461 eif4h other upstream 1376339 1708683 ~ 1723500 (-)

Expression


Co-expression Network