G152588 (rpl23a)


Basic Information

Item Value
gene id G152588
gene name rpl23a
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2845217 ~ 2849608 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU192155
ccggacgcgtcccagaggtttttattgtaaaaccaggccgttcTTGGGAGGAgcagcagcgactgtgggtttggcttcttgtttttgttttttaaagacagagcgatagagcctgacacggaaaatacttttgtgtctattttattctttctgctttacatgattaaaaacagcataataaatacacgtttctgttaagaggtattaggaagagctaaacgagtatagacattatattcagacaatcacattcccataagaatacatttccatgtgcaacaataactacatttttgccatttagtattattatcatttgtgctagtatatgtattttaaacggcacaacgTGActgtttctgcagatttgtaactgcaaacaatactttttgctgaatttataatttacttatcaaacgtccttaaccagggcaagttacagttgaaacaaaatacacacgtttcacgattaatcatccagctacaacatagcaggttataattgaactaaagtgtgcgtCTCAGTCATGGAGTTTAGGacttatggacacatttattaaaccagtccttaatgttttagagggaaaccctgatctgctgtatttattcattaatttaacttgcaaatggacacacgttaactgaatcgtgttcgccttcataccgattatctctgcggattgtcctgcacaccattcacacaacacagcctgaaacaccggccagctgttcacaaaatattaatacaatcgcctgctaccgatccgattattatcctccagtttatttttaactagtcagggcactgcaccggtcctgtgttAATAcacggatattaactgtaagcagatagttaaccgtccacaaaacacggacgcttagccagtgaAAATACCCATTTaagcgtccgccagtggaaacagggcattaATGGTGCATCTTTAGGACGTCTCCCCCAGGTCCCTTGTCATTACTACGTGTACTCAATAAGattaataattaagaaacagaCCATGGCAGAATTTTTACAAACTTTATTCTCTGTACATTTCTTGATGAACAGTTTAGATGATGCcaatCTTGTTTGCAACATCCAGGGCATCGTAGTCTGGTGCAAGACGGACGTAGGCCTTCTTCTCACCATCGGgcCTGATCAACGTGTTGACTTTGGCCACATCGATGTCGTACAGTTTCTTGACCGCATGCTTGATCTGGTGCTTGTTGGCCTTGACGTCGACGATAAACACCAAGGTATTGTTGTCCTCTATCTTCTTCATGGCTGACTCAGTGGTCAGAGGGAACTTAATGATGGCATAGTGGTCCAACTTGTTCCTGCGAGGAGCGCTCTTTCTGGGGTACTTGGGCTGCCTCCTCAGCCTCAGGGTCTTGGGCCTCCTGAAGGTGGGGGAGGTCCTGATCTTCTTGCGCTTGTGGCTGTGCACCCCCTTCAGCACGGCCTTCTTCGCCTTCAGGGCCTTGGACTTGGCCTCAGTCTTGGCAGGGACAGCTTCCTTCTTCGCCTTCGGGGCCATCTTAGGAAAGGGAGAGCAAACGGGGTTTCGCACAGTATATCGCAGGGGCCAGGAAGACGAACGCTCGCGAGAGAAACAGACCGGCGCGGTGTGTTCTGGGAGGTGTAGTTTCAGAGCTGTGGCTCGGCACCGTGAAACAATAGTGTTTCTGTTTGACTTGTTTT

Function

symbol description
rpl23a Predicted to be a structural constituent of ribosome. Acts upstream of or within pancreas development and regulation of cell cycle. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in digestive system; endodermal cell; and epithelial cell of pancreas. Orthologous to human RPL23A (ribosomal protein L23a).

NR:

description
60S ribosomal protein L23a

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192155 True 1696 TUCP 0.44 5 2845217 2849608

Neighbor

gene id symbol gene type direction distance location
AMCG00005493 NA coding upstream 516 2834497 ~ 2844701 (+)
AMCG00005502 synrg,LOC107727910 coding upstream 206309 2583399 ~ 2638908 (+)
AMCG00005503 NA coding upstream 275507 2566389 ~ 2569710 (+)
AMCG00005504 hnf1b coding upstream 279717 2546393 ~ 2565500 (+)
AMCG00005484 NA coding upstream 324263 2512222 ~ 2520954 (+)
AMCG00005494 rab34,LOC108443499,LOC102306323,LOC102777300,LOC108278203 coding downstream 484 2850092 ~ 2857112 (+)
AMCG00005492 NA coding downstream 17363 2866971 ~ 2871873 (+)
AMCG00005490 sdf2,LOC106602908 coding downstream 43697 2893305 ~ 2896669 (+)
AMCG00005509 NA coding downstream 302073 3151681 ~ 3171935 (+)
AMCG00005506 NA coding downstream 323971 3173579 ~ 3179680 (+)
G152397 NA non-coding upstream 521872 2255365 ~ 2323345 (+)
G152198 NA non-coding upstream 1383278 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 1386470 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 1591258 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 1787822 1057185 ~ 1057395 (+)
G152644 NA non-coding downstream 222342 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 334213 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 349724 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 410602 3260210 ~ 3260429 (+)
G152764 NA non-coding downstream 874305 3723913 ~ 3761827 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 334541 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 898417 1929455 ~ 1946800 (+)
G152337 NA other upstream 1041314 1799811 ~ 1803903 (+)
G152267 NA other upstream 1096283 1745960 ~ 1748934 (+)
AMCG00005434 NA other upstream 1327637 1509502 ~ 1517580 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 416766 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 1432909 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 1710605 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 2365205 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 3584913 6434521 ~ 6437078 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G35439 NA non-coding NC_053115.1 CM020912.1 2074307 ~ 2074633 (-)
mexican tetra (Astyanax mexicanus) G35203 NA non-coding NC_035900.1 CM008303.1 7403169 ~ 7404536 (-)