G152943


Basic Information

Item Value
gene id G152943
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4532321 ~ 4534824 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU192606
TTTTGGTTTTTCCTGGGAAAGATTATTATCAGAgtccagtatttattttcccgCCCCACCAGTGCGTAGCCGTTTCCTGAGCAATAAGGAGTGCGTACACAGTCTTCAGGTACCTGACTTTATTCAAGGAACATTGTGAGGTAACGCAAACCGACACACTGCCCTTCCCTCGGTACAGAGCGGTCAGCCACCTCTCCACAACACCGCcataaagacagacagacagactcttACAGTAAATGACCTCACCGCGCCTTCAGTAGTACTTCACAGATCAGACACGAGAGAGGTGCTGTTGacctttaattgaattaaattgcaTTAGACACAACCAGGCTCTTCAGCGGGCCTGCGGCCGGTCGGGCCAGACTGACCTCTGCCACTCACCTCTGAAACCAGCGGTTTCTAGGGAAGGGGGATTTGTCCATCTCACGTCTGTCCAGGTTTGGACAGGACATCGGGATAGTGTTAAATACTCTATAGAGAGCTGAGAGCCTTTCCACGGCCCCTCCGTGTTCACCAGCTCAATCGCTCGCTCAGTAGAGACATGTTCAGAGGAGAAGCCCCTTCATTACAcaattcagtcatttaaaacacagcaaacaaGGGGTACCTTCCACAGAGCAGAAACAATTTCAACGCTACAGATTAGGAATTAAAGCACATATCCAATTCTGTTAAGACAGCTTGGTGGATTGTCATCTGTAATTTACGGTTTGGGTTTTAAATTACAGAGGATCGCCTGGGTGTGTATTTTTTGGATTACACCGGCAATAGAGTGTAGGTCAGTTACAACAACGCCTGAATAACGGGGGAAATAGTTTAAAAGGTGGAATACCCTTTCAGCTCAGTTTTACgtgaccaaaataaataatgaaaaatattttggttGTATACGTCAGTGGTTTATAGATCCAAGCTCATTATTCTCTCTGTAAACCtcagaaaagcatttttgtcGGTAAAACATTTCTCCACCTTTGGTACTGTAAACTAAACATCATGAGGAATGCCTTGTTTAATAATACAACGAGATGTGcgtatgaatgtatgtgtataaaactacaaaacattTGAAGCACGTTAATAAAATCgatctttataaaacaaaatgacgcTCGCTCTAGGACTATAATACAGACTGTAGATCTATATAGATAAGGTGTGAAGTGTGTATGAACTGTGCGCTCTCCATGGTGTGTGTTGTGCGTTCGCGGTTCATTGTGTTATCGCGGCGCTGTCCGCCTTTCATGTCAGCGGAGGCCGGCCGCGGCTGACCCGGGGGTCACTATGAAAGCGTCGGCTCTGAATGGGGGCCCTCGAGTGGCGGCGGCCTGCTACCCCCCGGCTTTGATACCCCCCCAACCCAGTGCGGGccgcacacactcgcacacatcCTGTTTACACCTGCTGCTTTTGATCACAAATTAAGTGCTctttttaaaggtgttttaatCTCTCCGTTTATGCACAACAGAATCAATTGGTTGCGGTTATTGATGTTGAAATTGTTATCGCGTgccgggggggtggttttgtttgtttgtttgtttgttggttccTGGGGGAGGATTTAGATTAAGACTGTCCTTAGTTGTATAGTTACTATCATTTTATCCTTTCTGCCTGCTGCAAAcctgttaaaaacacatttatatataaaaaaacacaataataataataataataataataataatagtacatacATATGAGAGGGAAATGTTCTAATGTGATAGTGGAACAGCGTGTGAAAGTCTATCTTAATTATTGTAAGTAGGGCTCTCCCAGGACAGTTAATGTCCCGGTGCTTGGGGACGCCGCTTGGACACACTGCCACTTAGCCTCCCCGTGCTGGCGGCAGTGGGGGGTCCGCTGGCTGAGCTGCTTCGGGGATTTACAGCCGTACTCAGAGAGGAGGGGACGGCCATCCTCCGTGCTCCTCTCAGACGGGCTTTAACCTGAACTGCCACGCGCGGGGTACGAATGTCGGCTCTTATCTGTATGGATGGGAAGATCAATagcaattaaatgcaaatctgTTTTTGCATGATTTCGATGTTTCGAGCCCTATGGATTTCCCTAAATCTGACCCCTTTCTGTTGATAGCAGCagctatgtatgtgtgtgtgtgtatgtatatccaTAGAGAgatatgtaaacaaaatatacatcgGATGCTGAGCAGACTTGACTGTCCCTCTGTTCTCGGGCGTCCCGGTGTGAATAAAACTTCTCCTCCGCCGGCAGCCGAGTGTCATCAACTCCCTCTTGCCACAGGAgccgtgtgcgtgtgcgtgtgtgtgtgcatgtgtgtgttgaggtCCAGCTAAGTGGTGGGGAGAGGGTCTCTAGGAAGAGGCCGGCGCTTCCATGGTGGACAGGATCCGCACCACCTCGGTCCGCTGCGTGGGGGAGATGTGCTGCGTCATGTGCACGATGGAGTCCATGGCCACCTCGGGGTTGGCCTGGACCAGGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192606 True 2481 lncRNA 0.47 2 4532321 4534824

Neighbor

gene id symbol gene type direction distance location
AMCG00005545 LOC103910010 coding upstream 12216 4495608 ~ 4520105 (+)
AMCG00005544 lhx1a,LOC105897175,LOC105023804,LOC106613102,LOC106581220,LOC107685180 coding upstream 41502 4479446 ~ 4490819 (+)
AMCG00005537 NA coding upstream 222173 4305625 ~ 4310148 (+)
AMCG00005534 phf12 coding upstream 251876 4264415 ~ 4280445 (+)
AMCG00005536 NA coding upstream 281473 4240208 ~ 4250848 (+)
AMCG00005553 NA coding downstream 70052 4604876 ~ 4615951 (+)
AMCG00005554 NA coding downstream 91289 4626113 ~ 4635255 (+)
AMCG00005577 appbp2 coding downstream 449406 4984230 ~ 5000598 (+)
AMCG00005580 usp32,LOC107585566,LOC108425843 coding downstream 487447 5022271 ~ 5067746 (+)
AMCG00005578 NA coding downstream 537302 5072126 ~ 5079503 (+)
G152906 NA non-coding upstream 239439 4292030 ~ 4292882 (+)
G152866 NA non-coding upstream 271686 4258866 ~ 4260635 (+)
G152764 NA non-coding upstream 770494 3723913 ~ 3761827 (+)
G152657 NA non-coding upstream 1271892 3260210 ~ 3260429 (+)
G152656 NA non-coding upstream 1332134 3199332 ~ 3200187 (+)
G153080 NA non-coding downstream 655703 5190527 ~ 5190796 (+)
G153082 NA non-coding downstream 660964 5195788 ~ 5201535 (+)
G153113 NA non-coding downstream 773121 5307945 ~ 5309091 (+)
G153118 LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079 non-coding downstream 786236 5321060 ~ 5323923 (+)
G153154 LOC106602867,LOC107597455 non-coding downstream 909555 5444379 ~ 5445257 (+)
AMCG00005538 NA other upstream 227165 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 1261477 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 1682713 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 2021645 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 2585521 1929455 ~ 1946800 (+)
AMCG00005546 acaca,LOC107691719 other downstream 25389 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 679989 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 1899697 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 1952894 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 2073819 6608643 ~ 6662480 (+)

Expression


Co-expression Network