G153082


Basic Information

Item Value
gene id G153082
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5195788 ~ 5201535 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU192775
tatttattaaatgcaggCACAGAGGAACATTTCGTGCTGAACCACATGCAAGACCACTCCGGAAAACACAAACGGGAAGATCGCGAGTGAACCCTTTCTGAGGCCTCACTTGAACTTTGCTTCTCCCTGACATGGCACTTCACAGACGCCGGTAACTGCTGaggctttcaaaataaaaatgaaaaaaacgtCACCCTGCACACATTCAGTCGTTCTTCATGCACTCGAAGCGCTGCATTAGGCATGCAGCTTGATGTGGTTTCTCAGCTTCTTCGACTCGTTCCAAGGCTCTGATACACGCTTGCTAAACACAAGAAGACAGGCTCTCAGTCTCCTGTAGCTGTCgctgcaattaaaaataaaaagcctgtcTTGGGTGGGAAAAAGTGccaggaggagaaaaaaaaaaaaaaaagccgaGAGCCAGAACGAGAACGAGATGCAGAATGAAACCAAGTGGGTGTACGAGTGTTGTTTATCTCATCTACAGTCTACAGACCGACTCGCTTGCCTGCTTGCCTTCCAGTAGGCCGAGGAAAACCAGTTTAAATTGTGAATCGGAAACAATGGGTCGTTTACATTAAAGCAGGGTCTTTTAAGAATAGAAATCAACTGATTTGCAAAAAGTGACAATATTTATGCATCCACTATCAATATTCTTCATGCCAATTCAAAATGTCCTGTTCAGTAAGGAGAGAGAAGCCAAGCGGACCCTGCCAAGCTGTTCACAGAGCCCAGTTTGGAAGGGTCAGCCGTGGCGAGGTGAAGAAACATCTACCCCCAGCTTCTACTCCCTCACCCTTGAGAGTAGAGTTACCAAAATATACACCCTGTAGAGATCTTCGGTCAAGACAGGGAAAGGTACCACGGGGGTAAGTGCTAACTGTGGCTTTCTGAAAGGAAACTAAAGAGACTCGGGTGCAAGCATTGTAACATCCCGGCACTCGGTTGACCACGTGACGTACGGTCTGATCCCTGGTCGATGAAGGAAACGGGTGGCAGCCAGGGGCAGTCGGGGCGCCGGGGCATTATTGAGCCTCCCCTTCCTCCATCTCGGCTTCCTCGGGGGCGGGGGCGCAGTCCTTCTCGGGGTCCCCGGGGAGGATGTCTGTCACTTTCTGGAGCAGCTCCTCGATCTGCTCCTCCGTCAGCCTCTCTTCACTCTCCTCCACCCAGCTGGATCTCCACCGCCGTCTGCGGCCTGTGATTCAGGAGCTGGAGTTTCTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192775 True 1228 lncRNA 0.50 2 5195788 5201535

Neighbor

gene id symbol gene type direction distance location
AMCG00005569 sgsm2,LOC108277483,LOC107729122 coding upstream 53192 5127087 ~ 5142596 (+)
AMCG00005571 sgsm2,LOC106581519 coding upstream 68815 5121930 ~ 5126973 (+)
AMCG00005570 tnfaip1 coding upstream 104930 5087506 ~ 5090858 (+)
AMCG00005579 NA coding upstream 113768 5080135 ~ 5082020 (+)
AMCG00005578 NA coding upstream 116285 5072126 ~ 5079503 (+)
AMCG00005585 NA coding downstream 7265 5208800 ~ 5211337 (+)
AMCG00005584 nup88,LOC106603451,LOC106567676 coding downstream 68862 5270397 ~ 5278525 (+)
AMCG00005612 NA coding downstream 108735 5310270 ~ 5311298 (+)
AMCG00005615 NA coding downstream 124152 5325687 ~ 5339731 (+)
AMCG00005614 ruvbl2,LOC105888489,LOC107664527 coding downstream 147296 5348831 ~ 5355701 (+)
G153080 NA non-coding upstream 4992 5190527 ~ 5190796 (+)
G152943 NA non-coding upstream 660964 4532321 ~ 4534824 (+)
G152906 NA non-coding upstream 902906 4292030 ~ 4292882 (+)
G152866 NA non-coding upstream 935153 4258866 ~ 4260635 (+)
G152764 NA non-coding upstream 1433961 3723913 ~ 3761827 (+)
G153113 NA non-coding downstream 106410 5307945 ~ 5309091 (+)
G153118 LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079 non-coding downstream 119525 5321060 ~ 5323923 (+)
G153154 LOC106602867,LOC107597455 non-coding downstream 242844 5444379 ~ 5445257 (+)
G153271 NA non-coding downstream 599113 5800648 ~ 5800892 (+)
G153274 NA non-coding downstream 715300 5916835 ~ 5955451 (+)
AMCG00005546 acaca,LOC107691719 other upstream 632768 4560213 ~ 4563020 (+)
AMCG00005538 NA other upstream 890632 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 1924944 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 2346180 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 2685112 2503910 ~ 2510676 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 13278 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 1232986 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 1286183 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 1407108 6608643 ~ 6662480 (+)
G153675 NA other downstream 2059142 7260677 ~ 7265971 (+)

Expression


Co-expression Network