G153118 (LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079)


Basic Information

Item Value
gene id G153118
gene name LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5321060 ~ 5323923 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU192816
GGTCAAGCACCTGCGGTCTCACTCCGGGGAGAAGCCCTACCAGTGCCACCAGTGCGGCAACAAATTCACCGAGAAGCAGAGCCTGAGGACCCACCTGCAGCTGCACACGGGGGAGAAGCCCCACATCTGCAGCTACTGCGGGAAGAGCTTCAGTCTCCTGCAACACCTGCGCCGGCACGAGAACATCCACAAGGGGGAGAAGCCCTACCAGTGCCACCTGTGCGACCGGAGCTTCAACCAGCCGGGGAACCTGAAGTCCCACCTGCGGGTTCACACTGGGGAGAAGCCGTTCAAGTGTGACCAGTGTGAGAAGAGCTTCACGCACAGGGTTAGCCTGAAGAACCACCTACAGAGCCACTCAGAGGGGAAATCCTAGTATTGACGCCTTGTGTGAGGAGAGGGGTCCGCTGGTGGGGAAAGAGAAACTGCAACAGTGGTCCGACTGCGGAGACGGCTTGAGTCAGTTTGGAATTCTCAGATCGCTCACAGAGGAAAAGAGGGGACTGGTTTCTCTGGGATCTGGGTTCACAGGGAGTTCCTGGTCCCTGGCGAAGGGTGCTTTCTTTAAAGGAGGGATGTGTGGAGAGATGGTGCATGAGCTGTTCAAAAAGAGGAGTAATAACAGACTTGTCATCCGAGATTTGCGAACAGGGGCATTCCCTGAAAGCTAATATTGCAGTTTTGCACAGAAAATCTatagaatgtaaaataatgctttgcatttcaCCCCTGGAAGGCGGCAGATAACATTTCACAGGTTCAGGATATTATCTGCGATACTGAGCCTGCACGGACTTAGGCCCCTGGAactcattttacaaaatactgcaataccaataaaatacacaaaccatCTGAgaattttcaaattataaatacaataggTCTTAACTCATTCAGAGCACTGCagtcatttaataatttacaccacctcaaaatgttatttcagttattaaCATGGTACAGTTTAGTAGATGTGCTTGTTGTGAAGTCTTCCATAGGATTGTGCCTTTAATCAAAACATACCAGAAAACCTGAACGGTTTCTGCCACAGCCTGCATGAAAGCTCAGGTTTGTCTAACACCATTGTACAACAGAGAATAATGTCTCCAAGTGTTTAgatacaaaaactgaaatgttgaaATTTCCAAATCCAGTGTAGTGGAATTTATAACGTGATATAATTGATAGTTTTTTAAcccctatatttatatatctattattattattaatatgttgaTTTAGTTCAATGTACAgcagttctgtttttaatacacaatGTGCGCGTCTGTGTACAACTGCAAGGTGTGGTTCCTGTAAACAGTGTCAATGTTAAGAACGCTGCGTCTCCTTAAACCGCATTCCAGTTACAGATGTATGTGAACagataatcattttaatatgagcAACGTTATCTTGTCCATGTAAATAAACTGGTGGCTATTTATTTGGTTGgtcaattttttgttttattaaattgaaatatgaatgtatgaCGTCATTATATGTCTGTATATACCCAATACACTAAAGGTGACTTCAGGTTTTCAGAAACAGCCCTTATTTTAAGTGTGTAAAGTTAATTCActtctgtaaaaatgtattcgatctgcagtttctcttttccacctacaaagtttattatttaatcctCCCATCTTGTGGTGAATGTGGAAAGAGTGTCCCCGTACTGTATAACCTTAGTTCACCAAGTCATCCACACAGGAAGATACCAACTGCAGAAAGATAGGCAAATGGTTCAaggaatcaaaataaaaccattactttattttaaaaaaatgtattgaaaaaaataatgcaattttttttttgtgtgcatgtgatTTCCAGTCTTTTGCGTAAACAAGGCGgtcatagacagacagagagattcACAGTTTTGATTATAATTTGGGAGTAGCGGAAGAGATTATGAATCGGGTGAAGAAGACTACAGAGGGGATACATGAAATGACTTTTGACGTAAGCAGGTATAATTATTTGTGCAGACGCTTGCTTTCTGTGCCTCTGAGCCTGTCGGAAATATTGTGTTGAATGAAATGTGATAGAATacatctgatttaaaaataaattgatactACAGTAATGAGAGAAGGCACAGAGCAGGACTCGATAACATTAGTCCTATACAGCCACCGTCCTTGGGCAGGTTTTACAGGTGGAATAATAGTCAATAAGAAGAGACTTGGAAAACCTATTAACTTGGACACAATAATACACAGCTGCTCTGAATAAGTGGAgcaaaccaaaaaccaaaagaCTGGACATTGTAGGGGGTTTAAGGCTGCTATACACCTCCACTAGAGGGCTTATTTGAGCTGACAGATCTTCACCGAGGTCCCAACCCCGAACCCAGGGTACAGCGGCTCAGTGAACTTAGTCTCGAACCTGTGAAGCAGAGTCATGGTCTCGGAAATGCTGTAGAAGGACAGGACGCCAGCAGTGTGGTCCAGGTACACTCCGATCCGGGGGGAGTGGGCCGCGTTTATGCGCTTGTCCTCCCGGTTGTGCCAGGCGGAGTAACCTGATTCGGAGCAAAGGAGACTCCAGGACTTATCGTTGTAGCCCAGGAGACACAGGGAGCCCTTCCCCTTCCTGCTGATCCCTTTGTACGTGACTCCGGTGGAGAACTCGCCGCTCCACTCGATTTCCCAGTAGTAGCGCTTGCCACTCAGGGCCTCCCGGCACAGCACCTGGGCGAAGCTGTCGAATCTCTCGGGGTGGTCCGGATAGGCCTGGATGTCTCTGGTCCGGGTCACCTTTCTGTTCCCGTCCGATAGATGCAGCTCTCGGTAGGCTGTGTTGGTGTCCATTCTCAGCTGA

Function

NR:

description
PREDICTED: tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192816 True 2844 lncRNA 0.45 2 5321060 5323923

Neighbor

gene id symbol gene type direction distance location
AMCG00005612 NA coding upstream 9762 5310270 ~ 5311298 (+)
AMCG00005584 nup88,LOC106603451,LOC106567676 coding upstream 42535 5270397 ~ 5278525 (+)
AMCG00005585 NA coding upstream 109723 5208800 ~ 5211337 (+)
AMCG00005569 sgsm2,LOC108277483,LOC107729122 coding upstream 178464 5127087 ~ 5142596 (+)
AMCG00005571 sgsm2,LOC106581519 coding upstream 194087 5121930 ~ 5126973 (+)
AMCG00005615 NA coding downstream 1764 5325687 ~ 5339731 (+)
AMCG00005614 ruvbl2,LOC105888489,LOC107664527 coding downstream 24908 5348831 ~ 5355701 (+)
AMCG00005613 NA coding downstream 32280 5356203 ~ 5360923 (+)
AMCG00005624 NA coding downstream 142225 5466148 ~ 5475647 (+)
AMCG00005621 UBE2G1,ube2g1a,ube2g1,LOC107597432 coding downstream 155585 5479508 ~ 5489570 (+)
G153113 NA non-coding upstream 11969 5307945 ~ 5309091 (+)
G153082 NA non-coding upstream 119525 5195788 ~ 5201535 (+)
G153080 NA non-coding upstream 130264 5190527 ~ 5190796 (+)
G152943 NA non-coding upstream 786236 4532321 ~ 4534824 (+)
G152906 NA non-coding upstream 1028178 4292030 ~ 4292882 (+)
G153154 LOC106602867,LOC107597455 non-coding downstream 120456 5444379 ~ 5445257 (+)
G153271 NA non-coding downstream 476725 5800648 ~ 5800892 (+)
G153274 NA non-coding downstream 592912 5916835 ~ 5955451 (+)
G153312 NA non-coding downstream 724207 6048130 ~ 6048438 (+)
G153348 LOC107090330,LOC102220786 non-coding downstream 908236 6232159 ~ 6234047 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other upstream 79284 5214813 ~ 5241776 (+)
AMCG00005546 acaca,LOC107691719 other upstream 758040 4560213 ~ 4563020 (+)
AMCG00005538 NA other upstream 1015904 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 2050216 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 2471452 2845217 ~ 2849608 (+)
AMCG00005647 NA other downstream 1110598 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 1163795 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 1284720 6608643 ~ 6662480 (+)
G153675 NA other downstream 1936754 7260677 ~ 7265971 (+)
AMCG00005694 NA other downstream 1983135 7307058 ~ 7334571 (+)

Expression


Co-expression Network