G153154 (LOC106602867,LOC107597455)


Basic Information

Item Value
gene id G153154
gene name LOC106602867,LOC107597455
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5444379 ~ 5445257 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU192858
CTGCCACGGTGTACCTGTCCATGTAATTGAGCACATTCCCAAAACTCAGGATCCCCGCAGCCGCCACGGGAGAGCGGCACCTCAGCAGCGCGGCGCGGAATTTCTGCCCGGGTTTGCAGGGATGGAGGTCGGGGCTGGACTTCAGTCCGGGGCTCATGCTGCCGGACAGTGTGTGGACCTCATCCGAGCTGCTGCAGCCCTCGATCTCACATCCATCGCTTTCCACGCACATGTCTGCACAGGACAAATCCAGCGAGAGAAGAGAAGGAGCCTCGCAGGCGACACGGACGAGAGACGACAATCCCCAGAGGAAAGCGCAGCGCGAAGGAGCGGGATCAAGGTGCTGCTGGTTTAAGATTGGGAAGGGGGCGGTCGTGGCTCATGCTTTGTCGGGCGATTGACAGTGAGTGTCGCTAGGGCTCCTCCAggctccctctcctctctgccgGCTGTCACCTGTGCAGA

Function

NR:

description
PREDICTED: protein spinster homolog 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192858 True 465 lncRNA 0.61 2 5444379 5445257

Neighbor

gene id symbol gene type direction distance location
AMCG00005613 NA coding upstream 83456 5356203 ~ 5360923 (+)
AMCG00005614 ruvbl2,LOC105888489,LOC107664527 coding upstream 88678 5348831 ~ 5355701 (+)
AMCG00005615 NA coding upstream 104648 5325687 ~ 5339731 (+)
AMCG00005612 NA coding upstream 133081 5310270 ~ 5311298 (+)
AMCG00005584 nup88,LOC106603451,LOC106567676 coding upstream 165854 5270397 ~ 5278525 (+)
AMCG00005624 NA coding downstream 20891 5466148 ~ 5475647 (+)
AMCG00005621 UBE2G1,ube2g1a,ube2g1,LOC107597432 coding downstream 34251 5479508 ~ 5489570 (+)
AMCG00005623 ankfy1 coding downstream 47927 5493184 ~ 5508150 (+)
AMCG00005622 zzef1,LOC107598082 coding downstream 68783 5514040 ~ 5547029 (+)
AMCG00005593 NA coding downstream 132160 5577417 ~ 5593182 (+)
G153118 LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079 non-coding upstream 120456 5321060 ~ 5323923 (+)
G153113 NA non-coding upstream 135288 5307945 ~ 5309091 (+)
G153082 NA non-coding upstream 242844 5195788 ~ 5201535 (+)
G153080 NA non-coding upstream 253583 5190527 ~ 5190796 (+)
G152943 NA non-coding upstream 909555 4532321 ~ 4534824 (+)
G153271 NA non-coding downstream 355391 5800648 ~ 5800892 (+)
G153274 NA non-coding downstream 471578 5916835 ~ 5955451 (+)
G153312 NA non-coding downstream 602873 6048130 ~ 6048438 (+)
G153348 LOC107090330,LOC102220786 non-coding downstream 786902 6232159 ~ 6234047 (+)
G153381 NA non-coding downstream 837731 6282988 ~ 6331371 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other upstream 202603 5214813 ~ 5241776 (+)
AMCG00005546 acaca,LOC107691719 other upstream 881359 4560213 ~ 4563020 (+)
AMCG00005538 NA other upstream 1139223 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 2173535 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 2594771 2845217 ~ 2849608 (+)
AMCG00005647 NA other downstream 989264 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 1042461 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 1163386 6608643 ~ 6662480 (+)
G153675 NA other downstream 1815420 7260677 ~ 7265971 (+)
AMCG00005694 NA other downstream 1861801 7307058 ~ 7334571 (+)

Expression


Co-expression Network