G153274


Basic Information

Item Value
gene id G153274
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5916835 ~ 5955451 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU193006
CAAGAAACCAATATCTTTAATGAGCAACAGAAGGCAACCAACTCTCCTAAAACGTACACATGCTTATACAACAGTATTCGATTGAAACCGTTTCTCTCCTGTGGATTTTCCTCTCTTCTTACTGAAATGggcttttttttctattcttagTCTTCATTTACCCAGACTTCACCCTCACAGATAGGCAGGTTAAAGGTGGCCAAGCCCCTTAGAACTGCATCACCGTGATAACCCAGTtgtcttcctgtctccctggccgACTCGGTTTTTCTAAAGAATGATGCAGCAGAACATGCATATAATTGTAAACTGTCATGTAAACAGCCATGAAATCCTGTCACCAGTCAATTTCATAagtgtgcttttctttctatctttttccttcttcctttccttctttcttttcgGACCGAACACTGTAGTGAGGATCAGTGTCAACAGGAATGATAGAAAACaaagtatatgtatacataataaaataaggatGTAAACCATTTGACTCAACATATAtatcaaagaaaggaaaatggtGGCTTTCAAGTAGtaagatttctttcttttccttctttgttttaagtttgcttCACTGGAATTGCACAGAAGTAAACAAACCTACAGGAAGAGATGCTTTGAACTTTGACTAACACAACCCTCCCCACCCTGCCCTCCATCCCCATTCCCCCCCACATCAtcacaacaaacacatttactcTCTTGTCACAATGCAGTAAAGGACATTGACTTCAGAATGCCATTATGGAGAGAGGGATACTGGGAGTACATATTTGCAGGAGGAGCTACTGTGGGTACTGACCCTGACAACTCAACCACTTCTCCCTCTAGTGCGTTACTAAGGTTGGCAGCCTTAATCACCACTGCAAAAGGCCACAGGTCGCATGAGAAGCCTAACTAGTGACTAATTGTGACCTAATCTGTCGATTTCCCTTTCCCAGCCTATCGGTTCGTAAATCTATCTTATATCAACACCTTGTTAGGGAAAGCTCCATGCTGGCTAAGACATGAAGTCTATGCCGCCTGAAGGCTATATTGTAGGATGACATTCATGGCGCTAAAGTGCTTGTGGTTTTCCGGCTTAAAAGATGTCACCCATTCAGCGACAACAACGTGGCCTGTACCAAGTAGATGCCTTGCAAATTGTATTATGTGAACACTCCAGATGCCTTatgcattgctttgtttttgattttacgAGCTTGTCATggcatatatacattataatgttCAGAATTATTTACTCCCAGTGTTTGTCTTTGAGACGTCAGTCCATAGAAACTGATAAGTCTGTGATGGGAGATCCAGCGCCATTTTGTTGTCTCATGCCTAgcttctgaaatctgaaatgtcaCCTGACTGGCAGTCGGTCAACAGgccagttttattttacaggatGCGCGAGAGGTTAGCAGCACAGCCCTGGAGTCTCGCCGAGAAGCAGCCTCCTTATCGTTGTTTTTAGGAAACGAACTGCATGAAAGCATTTGCTCTTCATCCAGATGCCACTCAGTATTCAGATGATATTGGGAAGAAATCATTAATTTGctatagttttgttttacagatctGTATTATGTTTAGCAATTGTTAGGTGGTTTTATAACCAAATTACTCCTTCAGCAACCCCTGTATTTGTGATATGTCTGTTTTGGCATACAAAACAGGTTGTCGTTCGCTACAATGTTGTGGAACGGGTCACAGACTCTTGAATATTCCTACACACTCTCTTTTCCTTATAATCCCACCTGCAGAACCTCAACTCACTTCTTAAACCCCCAACTATCCAACCCACACCTACCCTATGAAACTAGGCCTGCATGAACCAGGTATAATCTCTTACAATTTCATCTGTAAGCCAGCATCGCCCTCACTCTACCATGTGCCCCTGTCTAACACTGAGCCTTCTCAAACAACCAGAACAATCTCTTCCCCACACAAGCTTGAGCTTCTCATGCCTTTCTTTCTATACATCTATGCGTGTCCATATCCCTATGTTTTCCCCCTGTCATATCCACCCAAATAAAATAGGCAATTCCTCTTTAACCCAGCTGCAAACCTTTCTACACCCCCGATTCCAACAGGCTTATCACAACATCAGGATGATACGCCATGACTCTGCCTAAGGTGAAGTTAGGACAGTGTAGTAATCCAACACTAGAGTAATAACCAGCTGTAATAACAAAACTATAGCAATGATAGATGCCAAGTGACTGCAGTACCAGTATAGCTATCTTAATCGGGGGAAAGAAAACGTAATTATGGTGACAGTGTAAGTGGAATGGAAATAGTCTCAGCAGTTTCCCATCGTGCCTGTTATTGTCCTATTTGTCTTTGAGCTAAGATACTTCGGTTGTTCTTGGTGCTCCAACGATCTACTTCCCAAAACGATCAACCTCTAACCCTCCAGCACCAGGCAATAATCTCTCCGCCAGATTTCCGTTATTTTCCCACAAACAAGGAACAAGAATCACGGGACATCGTCACGGAGGACAGACCACCATCCCAGAAAATGTGCAAGTCTCCACTCAACCTACACTGCACCATAGAGTTCAGCAGACAGGACTGTTGCCTATGGTAGGGCAAATGAAACCCTGAGAAACCACAGCAAAAGCACTGAGTTCAATTTACAACTAAACTCAACCAAATGATCAATATATGTGTCAGCTGCATTTAAGGTACCTGAAGCTAAGTTGGTGCTGTTTATCTTTGTTTCCGAGGCTCCCCCCCCTCCTGTTTAAACCACAAGCTGTTTaatgacagagagaaaaatacaaatacaaaaaaaaaaaaaaatcaaccaaaaAAGGTGATGTCAGTCGCACAAATGCGGAAAGGCCCACAATATTAGGAGCGCAAAACCATGACGTGTTCTctacgtttttttttccccccaaaccaaaaagaaaatgtgaaaagtttACTTCATTGTGACTATGCAATACAACTCGCCAAATACAGCTGTGAAATGGTATAGAAGAGCTCttgtcattttctctttttattttgctcttgtGCAAACTCTACATAAATGACTCACATTCAATTTATTCATCACTCGGGAGAccgctaaaaaaataaaataataaaattaaaataaataaatggtccGTGTGTGAAGTAATTCCTTACAGAAACACTGATTCTGAAAAATTAATCACTGTTCAAAGCTTAAATAGTTCACTGCATAACATGACAGAGAAAGCACAAACAGAAAGGTCATTCTAAGAACAACATATTCATCGTttacattgtaataattataatttcaccaTGACAAACACCAGACAGTAAGATTAAGCTAacactggtgtttttttttttttTTGTTTTTTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193006 True 3348 lncRNA 0.41 2 5916835 5955451

Neighbor

gene id symbol gene type direction distance location
AMCG00005608 NA coding upstream 12196 5901491 ~ 5904639 (+)
AMCG00005609 NA coding upstream 20531 5891753 ~ 5896304 (+)
AMCG00005607 NA coding upstream 34544 5868340 ~ 5882291 (+)
AMCG00005594 NA coding upstream 70351 5845595 ~ 5846484 (+)
AMCG00005595 NA coding upstream 114779 5785094 ~ 5802056 (+)
AMCG00005600 LOC106603951 coding downstream 48941 6004392 ~ 6045735 (+)
AMCG00005599 NA coding downstream 117775 6073226 ~ 6077726 (+)
AMCG00005597 NA coding downstream 195848 6151299 ~ 6155374 (+)
AMCG00005626 mtmr4 coding downstream 250367 6205818 ~ 6229880 (+)
AMCG00005627 vkorc1l1 coding downstream 280183 6235634 ~ 6240612 (+)
G153271 NA non-coding upstream 115943 5800648 ~ 5800892 (+)
G153154 LOC106602867,LOC107597455 non-coding upstream 471578 5444379 ~ 5445257 (+)
G153118 LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079 non-coding upstream 592912 5321060 ~ 5323923 (+)
G153113 NA non-coding upstream 607744 5307945 ~ 5309091 (+)
G153082 NA non-coding upstream 715300 5195788 ~ 5201535 (+)
G153312 NA non-coding downstream 92679 6048130 ~ 6048438 (+)
G153348 LOC107090330,LOC102220786 non-coding downstream 276708 6232159 ~ 6234047 (+)
G153381 NA non-coding downstream 327537 6282988 ~ 6331371 (+)
G153390 NA non-coding downstream 377801 6333252 ~ 6393728 (+)
G153485 NA non-coding downstream 605448 6560899 ~ 6563478 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other upstream 675059 5214813 ~ 5241776 (+)
AMCG00005546 acaca,LOC107691719 other upstream 1353815 4560213 ~ 4563020 (+)
AMCG00005538 NA other upstream 1611679 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 2645991 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 3067227 2845217 ~ 2849608 (+)
AMCG00005647 NA other downstream 479070 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 532267 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 653192 6608643 ~ 6662480 (+)
G153675 NA other downstream 1305226 7260677 ~ 7265971 (+)
AMCG00005694 NA other downstream 1351607 7307058 ~ 7334571 (+)

Expression


Co-expression Network