G153348 (LOC107090330,LOC102220786)


Basic Information

Item Value
gene id G153348
gene name LOC107090330,LOC102220786
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6232159 ~ 6234047 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU193099
CTCGGttacaagcatttatttttattcaaaaacatgaaatgcattgCAGCTTTTTTTGGGAACCACACCCGGAATCCCAACATTGACCACCTGATCAAAAGTGTTCCAGAGAACAACTACAAAGTGCTTATATGGCTACACACACCGTGTTGTACTACATACAGCATCTGCTCACATAACCGTGaccataaaaactaaaaacacagccTTGACTATTCCCATACCAGAAGGTGCAAATATTGGTTTTATTGAGAAAAGGCCTTGACGTCTACAACCTACAAGACACAAGAGATTAAAAACATCAACTTGATTAGGTGTCTGGGTTTCAAGGAGAGCCCTCAGGCGCTGAAGCACAATATCAGTCCTCAAGCTCCACTCGGCACTTGGAGAGAAGCCCAAGCTCTTGGCCGGTGAAGGGAGTCCTGTCCAGTCGTCCATATCGGTGTCTATCGTCCATCTCTTCGGCAAAGCAAGAACCTTGAAGAGGCGCTCTTGGTCCTGCGGCGCTTCAGCTCGCTGTTGTGGAATTTCTCCGCGATCTTCCTCTCATGTCCGGCGGGGCTGTGGCGGTTGGTGTGCAGGCCGATCTCTCGCTTGGTTCTCCCCTTCCCCCCGGCGTGGCAGGAGTACTCAATCAGGTTATAATACTCGTACTGGTCGTAGTGCTCGGTCTCGAAGGAGGCGAGGGTCTCGATGTCGGTGGCCATGACTGCCTGTCCCGATTCCCCGGTTTGAACGGCGATATGAGGATCCTCTCCGCTCAGCTGAAGTAAACAGAGCCCGGCCTGCAGCGCACGCTCCGCTCTGCATGTAAACAAGTGA

Function

NR:

description
PREDICTED: nuclear transcriptional regulator 1-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193099 True 822 lncRNA 0.51 2 6232159 6234047

Neighbor

gene id symbol gene type direction distance location
AMCG00005626 mtmr4 coding upstream 2279 6205818 ~ 6229880 (+)
AMCG00005597 NA coding upstream 76785 6151299 ~ 6155374 (+)
AMCG00005599 NA coding upstream 154433 6073226 ~ 6077726 (+)
AMCG00005600 LOC106603951 coding upstream 186424 6004392 ~ 6045735 (+)
AMCG00005608 NA coding upstream 327520 5901491 ~ 5904639 (+)
AMCG00005627 vkorc1l1 coding downstream 1587 6235634 ~ 6240612 (+)
AMCG00005634 NA coding downstream 66890 6300937 ~ 6302204 (+)
AMCG00005636 NA coding downstream 106877 6340924 ~ 6343422 (+)
AMCG00005635 ggnbp2 coding downstream 110865 6344912 ~ 6354314 (+)
AMCG00005637 NA coding downstream 121886 6355933 ~ 6357648 (+)
G153312 NA non-coding upstream 183721 6048130 ~ 6048438 (+)
G153274 NA non-coding upstream 276708 5916835 ~ 5955451 (+)
G153271 NA non-coding upstream 431267 5800648 ~ 5800892 (+)
G153154 LOC106602867,LOC107597455 non-coding upstream 786902 5444379 ~ 5445257 (+)
G153118 LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079 non-coding upstream 908236 5321060 ~ 5323923 (+)
G153381 NA non-coding downstream 48941 6282988 ~ 6331371 (+)
G153390 NA non-coding downstream 99205 6333252 ~ 6393728 (+)
G153485 NA non-coding downstream 326852 6560899 ~ 6563478 (+)
G153626 NA non-coding downstream 868158 7102205 ~ 7157875 (+)
G153687 NA non-coding downstream 1063087 7297134 ~ 7297381 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other upstream 990383 5214813 ~ 5241776 (+)
AMCG00005546 acaca,LOC107691719 other upstream 1669139 4560213 ~ 4563020 (+)
AMCG00005538 NA other upstream 1927003 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 2961315 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 3382551 2845217 ~ 2849608 (+)
AMCG00005647 NA other downstream 200474 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 253671 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 374596 6608643 ~ 6662480 (+)
G153675 NA other downstream 1026630 7260677 ~ 7265971 (+)
AMCG00005694 NA other downstream 1073011 7307058 ~ 7334571 (+)

Expression


Co-expression Network