G153485


Basic Information

Item Value
gene id G153485
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6560899 ~ 6563478 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU193268
GGCTAGTTAGTTTTATTTATGCCAGGTATTGAACAAGTTAAGAAAAGTAGAAGAAACAGTTTTAACTTTAACATCTTTTATTTGGACATTTTAGACTCAAGACACTGAAaggaatgcaaaataattagaaaagtgAAGTTTGGGGTAGGGGAAAATGCAACAAGCAAGCTGTCAATTTGGAAAGAGTCATTGACCTCCTCTCAGTCGCAGGACCAGGTGCAATGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATCTTTCAATCTACAgcattaaaaagagaaaatgtacattAGTCCTGTGGAAACCAATAGTAGCAGATCCTGAGATGGAAAATCTTGCCTCAATTCATCCCCCTCTTGAAACACATTTATGGATTTTCTTGAATTAGGAGTCTCTTTGCAAACCTCATCTGCCAAATtatatgtacacacaaacaACTGCAGGTTTCTAAATATCTTGCAAATATTACTagaatagttttaaataaatccaaactAAGGTCATAGCCAGATCAGTTAGTGACttcttaaaaaagaagaaacattcAGTCATGCCTACAAAAGCCATTCATACAAAGTCTAGAGTTGTGCAAACAAATGAGAACTAATGCGCCGATGTATTTGAATCGCTTCACTGTACCAATAGCCTATAGATAGAAGGGAAACTGGGGAGAGAGGGCTTTATACAGTTTCAAATAATGCTACTTTAAACGTTAAAGAGGTAAAACCCGAATAAAAACCCCACTGCACGTTTAGAAAGTAAAACCATTTCGTTTAAGCCCACACCACTGTGAAAGTGCCGAGCCCGGCTACTCGATCATATACGGCAGTCTACGGCCTAGGGATCATGCGGCCTTTGTCCCGGCCGTGTGACTCAGCACTCGGCTGAACCAAAACAGAGAGCACGCAAACAAACGGACTAACATTATCGCTTCGCCGAACTATACACTGTATACAATGCTACACATCACAACAGATATTAAGATTAAAATTGAGACAAAAAGCGAAAAccgtacattacaaatatagaaCATACAAATGCGGTTCAATCAAACGTACAAAAATGACTACTTCTTAATACAATATCAAGCTTCTATAGTGtagctgtaattaaaaacaatgtagaataaaataatacttacaGTTTCGGTAGCCGTCAAAATCTAAATCTTGATATAAAAGCGGTTCTCTGAATGTCTTCAGACTCTGCTGTACGTCCCCGGTGAACCTGTTTTATACAAACACAGCGTCATGACGTTGCAGTGCCATCACAACCATATTCATCCGCAGTGAAAAGTAGTGCGCGTTTTTAAAACCTATATTCTATTTTTACCAATAATCATATTCGTGCCCAGAATCACTATGGTCATGCGCAGACGCGTTTTCGATTCATggtgtggatttgtttttcataattgtgttaaaataaaaaccgcgGACTCATATCTCTAGTCGACATGAGAAATGTCTGGAAAATTCGAGAAGGCTGAGGCAGTTGGTCCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193268 True 1559 lncRNA 0.39 2 6560899 6563478

Neighbor

gene id symbol gene type direction distance location
AMCG00005668 NA coding upstream 232 6551704 ~ 6560667 (+)
AMCG00005670 NA coding upstream 33355 6520852 ~ 6527544 (+)
AMCG00005666 emc6,LOC107553592,LOC107552561 coding upstream 52282 6508285 ~ 6508617 (+)
AMCG00005648 fam222b coding upstream 84076 6467610 ~ 6476823 (+)
AMCG00005649 flot2,LOC103133852 coding upstream 136546 6400618 ~ 6424353 (+)
AMCG00005669 LOC107676655,LOC107718355,LOC107680877,LOC107553589 coding downstream 4609 6568087 ~ 6570099 (+)
AMCG00005661 ncor1 coding downstream 39507 6602985 ~ 6618586 (+)
AMCG00005662 NA coding downstream 100701 6664179 ~ 6669390 (+)
AMCG00005643 timm22,LOC107595490,LOC107688620,LOC107731058,LOC107740820,LOC107665041,LOC102778162 coding downstream 220684 6784162 ~ 6785859 (+)
AMCG00005630 NA coding downstream 369776 6933254 ~ 6936834 (+)
G153390 NA non-coding upstream 167171 6333252 ~ 6393728 (+)
G153381 NA non-coding upstream 229528 6282988 ~ 6331371 (+)
G153348 LOC107090330,LOC102220786 non-coding upstream 326852 6232159 ~ 6234047 (+)
G153312 NA non-coding upstream 512461 6048130 ~ 6048438 (+)
G153274 NA non-coding upstream 605448 5916835 ~ 5955451 (+)
G153626 NA non-coding downstream 538727 7102205 ~ 7157875 (+)
G153687 NA non-coding downstream 733656 7297134 ~ 7297381 (+)
G153689 NA non-coding downstream 734676 7298154 ~ 7298512 (+)
G153702 NA non-coding downstream 796906 7360384 ~ 7361317 (+)
G153747 NA non-coding downstream 1324088 7887566 ~ 7887780 (+)
AMCG00005667 NA other upstream 72117 6487718 ~ 6488782 (+)
AMCG00005647 NA other upstream 123821 6434521 ~ 6437078 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other upstream 1319123 5214813 ~ 5241776 (+)
AMCG00005546 acaca,LOC107691719 other upstream 1997879 4560213 ~ 4563020 (+)
AMCG00005538 NA other upstream 2255743 4282517 ~ 4305156 (+)
AMCG00005663 NA other downstream 45165 6608643 ~ 6662480 (+)
G153675 NA other downstream 697199 7260677 ~ 7265971 (+)
AMCG00005694 NA other downstream 743580 7307058 ~ 7334571 (+)
AMCG00005660 LOC106603524 other downstream 1185705 7749183 ~ 7787871 (+)
G153815 NA other downstream 1650426 8213904 ~ 8230590 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030351 ubb coding NC_007116.7 CM002889.2 42092227 ~ 42096331 (+)
eurasian perch (Perca fluviatilis) G169095 ubb,ubc,LOC107553588 non-coding NC_053127.1 CM020924.1 27291945 ~ 27297777 (+)