G154915


Basic Information

Item Value
gene id G154915
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11632091 ~ 11638019 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU195133
CCACAAATGGGTTATTTTACAGTCAAGGGGAGGGGGGAGTAGTATTCACAGACTGTCTCCCTTTTGAAACAGTAAAATAGTCATTCTTAAAgaaaaccataataataaatatgaacatgttaACAAACCGGTCTGAGTGTCAGCATCACTTGTTTCTGGCTGCAAAGGCCTTGTGGGGGGTTTCTCTTGCAGCAGCAGTTTGGGAAAGACCTTCACAATACAGATACCAGTTTCAAATGTGCGTCCACTGTGAagtcagacacacactcacacagataaGTAATCCGTCAGGCCCGAGCTCCCTCCCTTGCAGTAACCCTTTCAGGATCCAGCTGTTGTGCAAGATtgcaaataaagcatttttgtgCAGCGCAAATGGTAATTTTtaccaaaaaaattaaactatAACTTGCAACAGTTTTCACTGTGTATCTGGCCAAATAAAGATGCATGGCTTCTCTCACAGACAGTCACAGTATGAGGGCCCCTGCCCAGGCCTCGTTGTTATATACGTACCCAGTCAAGGTGGGGGCCACAGGTtgggaaactggcaaaacaaattcaaaattgtaTATCTGTGGCCTATGGGGGGGCAGTAACCTTCACCTTATGTAACTGCTCCCTCTAGTGGCAGGTGGACCTTTCTTCACAGACCTCAAATAACTTCACACACAATCTGTCTTTGTTTACTTCTTGGAAAAACTACAACTGTGTAAAGAGATGCACACAAATGTAGCCAATACTTTCAAAGTGCAATGATTGTAGGTGGGAGAAAGAGAAGTTGACCAACACTAAACAAGAAGCCTCTTCCCTCAGGTTGAAAAGTGTTAGACCTTCCTGCATGGAATGGATGAAGCGAGACACTATGTGTCCCTGATCCGACTGCTTGAAGCACCAGGGGTCTTAATAGTGCAAAAATGCCACACTTCTCAACCCGAGCACGAGCCATCACCACAACCCACGGCACGCTACCAGTGCCACACCCACATCACACCAGCCGCACCGAGACCCCGACAGAAGGCGGACTCACTCCCTCATCCGCCCTGCGCCCATCTCCGGCATTCCCACAGCTTTCTTACTAAGTCCCTGCCCCCAACCCGACTAGCCACCACACGTGACACCCACACTCGCCTCCGGAGTTCAACCCAGCAGCTCCCACTGACCCAGAACGCCACAGCAAACGGGGGCGGCTGACCGTGCAGACAGTCCTATTAAGGAAAGGGACAGAAACTAGACTATCTTGGAATCTTCAGGGGTCAAagctcaacacacacacacacacactcgctctTCAAAAACACTGTATAATCTCTGTACAGAACTGCTTCATTGAACTAGAATTTGATTGGTTTTTAACAGGATGTCTCTCACAATACTTTTCTAACGAGGAGATGTGGGGACTTTTGTAAACGAGGAACCCCCGCATCAGTCTTCACAATCAGTTGCACACAAACGAGACCGATCATCTCTGCCCGGAGTCCGTCGGCTCCTCCCAGGCCGACGGGGTGGTCACTCACGGGACAAAACAGGCAGGGCAGGAGGGAGTCGGACGAACGGATTCCCCCGTCAATCTCGTTCAGCGCAAAACACCCTCGCTGTCCCCACATCGCAGACCCTCCTTCAGCCCTGTGCCCTACTTGTCCAGCATGGGGGGGGTTGTGCTTCATTTGCAACTGCCACCTGCAACAAACACCTGTGACACTAACGGGGGGTCAAGGGGTCAAGGACGAGGAACAGGCAATAGACCAACCAGACTGGAAGAACATTGTTGCTTAATAACACCGGTGACCATAAACACCATGGGGGGTTTGGAGTTTGCGGAGACTAATTCTAGAACCTggaagaacaaatcactttttcttttgggtttttaattgtattttgcttCAGCTCAACATCAGGGAGATTCCAGTACACTTGAAACATACATTGTACCCATGCTCTCCACAGTCAATATAGGGCTTTTATATTTACATGGGAAAAAAGCAATGAAATCTTACAGTACTGTACGAGTCCAGGGgaaggacaaaaacaaacaaaaaaacaaaacactaggATCGGTATGTAATCAATTCTGTATGCAAGTTCTCTTTCCAAGacatccaaaaatatatatgctctGGAGCTTTTGTACAAAGTTAAGATGAAAGCATGAATACTTGCAATCTGGAGAGGAGTGGGAAACATGGgggacaataaaaatgaaattctaCTGCATCAATTAACTCACAGGCAAAATtattcaaggaaaaaaaaaaaaaaaaaacattaagtgaATGGGAAAGTTTTTTTCATGGAAGTACAATTTTTATTGATCAGTTTCAACCTACCCAGTAATCTTAGTTTAATAAAGCCTGCTTTGGGATTGTAGCATTAAAAACAGCTCTCCGCTGCAGCCCCCGCCTCAATACAACAGGTCGTTTGGCACGAACGGCACTCCCGGTGCGGTGCTGTACACTCCCGACGCAAACTGGAAGCAAGCAGCGCCATCTAGCGGTGACAGTATGTGCCGTATTCACCGACAAATCCACGTGGGTTGGTGGCAGTGCTGGGTTTGGAAAAGGTTTATCATTTACAGTGTGGCAACAAGTGAAATTATCCGTTCAAAACACGACTGGCTCGCCCGTCATTGAAAACTGCACCGGAGAAACTGGGGGCTGGCCGTTCACCTCCACTGCAAAGGTAGCGGACGCAGCGTGAATCCACGTTAAAAACGCCAACGTCTTCAATCCGATGTGGCGCGGGGGGGAGGGGATTTTCCGGGATGACAAGAGGCCACCGAAGGAGAATGACTTCACGAGATTCAGTGAGGGGAGGCCGTCCCTTTAATCTCGGGGTCAGTAAGGCCGTAAATTACTCCCACTGGGTCCTGTAATCCACAAAGTGCACCCTGAACTGTAGACCAACAGTGCATGATCAAACACGGCTGtgtcttcaaataaatacagaatgaacagaaaggaaaaaagattgGAGGAGccactcatttattcaattGCTTTTGAGAGTCCACACCTGgctcatttcattttaaatgcatatgtaaatatttctgaatGGAGAATAAAACCATGAGGGGGTGACCACTGAAAATGACAAACTTGTAAAGGCCTTTTGGGAAGGACAAAGCAGCTGACCGGCTAACGACAGCAGAGTTGGCTGACCGCTGCGGCTGAAGGGCAGAGTCCGTGAAAAGTGTGCGCGCGCGTTACGTTTGTGAAGGCCGTATGCATTGTGGCAGAAACCAGCAATGCTGGATCACAAGCCTCAGTCCGTGACCACGGGGGGGAGGCTTCAGACTGAGTCGGGTCGTGTCTGTCACCCCAGCAGTTCCCAAACAACCCCCCCATTATAAAGAAACACTGCCACACCACATCCTATTTGCGGTGTGATATAAATACAAAGTGTGATATTAAGGCATTCATTAACCTTTACCCAACTCCCCCCTTCAACAGGTACAAGAGTGTGCAGATGGGACTGGCATTAGATTCCTTCAATAAGTGGTCAAATCGTTAAAAAGAAACCAGACCCCCAAATTACTCCACTGCCACCACTCCTGCCTCTACAGTCCATCAGTGGACTGATCTCACAGTTCTATTACAAGAGTATCAGGTCCAGCAAAGAAATGCATATTCTGGATCTTTAAAATCATGGAAAAAAAGGCCTTTTGCAtcttctctcacacacaatttaatttcatacttgTACTTTGTAAAGGCCATAAAATTAGTAGTAAATTAAGAATATGGGCCAATAGCCCCTCCCACCTCCCATTTATCTGAGGAAGGGGTTGATAAAGTAGTCATAAACCACCAAGCATGATGGCTTGTGTGTATGGCACAAGTTTGGGTTGACAAAGTCCTATGAAAGGGTCCCTCAATACCCTGCCACCTCCACCCCACAAGGAAAGTGCTGAATCTTAAATGTTCACAGTCAATCTGGATCATGCACAGACATGATCAATTTTAGGATttgcaaataaaaccaaaaacaaaaaagcaggcaaaaagtctatccatccatccatccatccatcattCTTCCCTGGACAGCTTGGTGCTGCAAGACACTTCTTTCAAACTCTCAGACTTTTAACTCCCaggaataaactgaaataaataataataataaaaaacaaaaatcaaccaaCCAACCCATTCCTGTACAGCAACTAATGGAACCACCACAAGTGTCCACTGATGCTCAAGATCCTGCCAGGATGGCTACAGAAATGAGAtttatcattcatttattttggattaAATCATTTTGGTGTCAATGTTGGCAAATTTAATTCTTCACCCAAATTCAGTTTGCGAGACACGTCAACAAACCCAGTGGATTAGCGCAGGAAATTGGAAACATTGAATGCATTCAGGTGCAAATCTCCATCCTCACAAAACTAGGCTCTCCTCCGTGCCGGGGAAACGGGTCCGTGGGAAGCAGCGTAAATCCCATTCCCATGGGGTTTGGTCATTTTTTTGTGGTTGCTGTGGACGCCGCCATTTTGATTGAATTGGAGGCGACCATCTTGGCACCACTGGAGCTGGTAGGCCAAGGTCTGTGAGCGGTggcatgttattttaaagcaagGGAAAGAAAGACCAAATCGCATGCCAATGGGACGACAATAACTCTCCGCACCGACAAGCAAAGCAGTTACACAAGACAGATCTTTTGTTGAACAGCCTCCAAATGACTTATAAAAACAGGACCGGTTGGTCTGGAGCACCGCGATTTAATCCTGAATAGGAAGGGATTCCCCCTAAAGGTCACATGTGACGAGCCACACAATTTATAAGTTGGACGACACCTGAACACACAGAACGTGAGGGAGGAGAGAcgcacacatttatatatatacacaaacacaaagaaacaaccACTTTGGACAGTGTAACAGCAAAAGCACCGTGGGCAGGGTGGTCTGGATGACAATTCAAGGCTTTCGTCAGATCGGCTCCCAGGTTTTTGAATATCACATAGGtggctgtgtgtttgagttTACAGTGCTCTTTATTTAAGGTCTGGGGaaatcagataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacgtttaacTGCAACAAAGGGACTCTGCAAAGGCAGCTTCTGAATAAAATACTGTCTGACACAGgaaaaggaaatcaaaagaCACTGTTTTGTAGAGTTCTATAGGAGTGTGACTTTTTGTTTCCCTGTGGAAGtcaaagaataaattaaaaaaaaaaaaaaaatacaatacgtATTCACAGGTGTTCAGCATCGGACACTTCCGCTtcgagaaaaagaaaattatatatatattatatatatactgatcatTTCTCACATTAAAAATCTCTTAAATAGCATACTCATAACATTTGGCATATATTGCGCTGGCTCTGTGTCAACGTGACGACCCGCCCGCTTCCACAGGGGGCTTCTCACTGGCGATCTGCCAAGAGTGTGGATTTTCCTTTTATACCCTTAAGAGATCACCGTGCGTTTGGGGACGGGGGGGTGGAGGTaagaaagaacacaaaacaaaaaagccaaaaCAAAGAATCTAACGTTAGACAAGGTATTCCAGCCGCAGTGTTGCCACCCTGCAGTGAGAGGGACGCCCTCGGGCACATCTTCCAGAAAATCAGCTCTCCCTTTGCCCAGCCCCCATCGCGGCGGACTGCAGACTCTCCTCCCGTGGCGTCTGataagattttttgttttggaatccAGACATTCCTCTGCCCTGCCTGGTTTCccggaaaacaaagaaaattaaataaaagaaaaaaaaaaaaaaaaacaactcgaAGGAACAGTACTAGTGCCAGTTCTGGAGCTGCTGTTGGTCGTATTCTGCTATGAGTTTCTTTATATGTGCCAGTTTGTTGTGGAGATATTCACAGCGATTCTTCTCTTGGCTGTAATTCG

Function

GO: NA

KEGG:

id description
ko04137 Mitophagy - animal

RNA

RNA id representative length rna type GC content exon number start site end site
TU195133 True 5929 lncRNA 0.45 1 11632091 11638019

Neighbor

gene id symbol gene type direction distance location
AMCG00005866 NA coding upstream 69464 11558449 ~ 11562627 (+)
AMCG00005865 NA coding upstream 124654 11495141 ~ 11507437 (+)
AMCG00005908 NA coding upstream 145708 11477695 ~ 11486383 (+)
AMCG00005906 clg08h19orf60,cssa23h19orf60,LOC108439285,LOC107729673,LOC107676986,LOC103025814,LOC107593355 coding upstream 171348 11457498 ~ 11460743 (+)
AMCG00005874 plekhj1 coding upstream 288487 11339604 ~ 11343604 (+)
AMCG00005885 NA coding downstream 44790 11682809 ~ 11686775 (+)
AMCG00005864 NA coding downstream 52802 11690821 ~ 11691592 (+)
AMCG00005883 celf5,LOC106956403 coding downstream 164413 11802432 ~ 11824637 (+)
AMCG00005896 NA coding downstream 294165 11932184 ~ 11935207 (+)
AMCG00005898 NA coding downstream 297830 11935849 ~ 11938386 (+)
G154908 NA non-coding upstream 17722 11613670 ~ 11614369 (+)
G154879 NA non-coding upstream 143577 11486492 ~ 11488514 (+)
G154863 NA non-coding upstream 166466 11449480 ~ 11465625 (+)
G154847 NA non-coding upstream 215762 11416065 ~ 11416329 (+)
G154831 NA non-coding upstream 252802 11378780 ~ 11379289 (+)
G154916 NA non-coding downstream 305 11638324 ~ 11638774 (+)
G154917 NA non-coding downstream 1667 11639686 ~ 11639926 (+)
G154979 zmp:0000000521,LOC107696078,LOC107596226,LOC105888700 non-coding downstream 268622 11906641 ~ 11912100 (+)
G155017 NA non-coding downstream 332805 11970824 ~ 12207954 (+)
G155018 fstl3 non-coding downstream 346644 11984663 ~ 11986924 (+)
AMCG00005886 ssbp4,LOC107588873,LOC107690032,LOC107721784,LOC107676978,LOC107729707 other upstream 21940 11601902 ~ 11610151 (+)
AMCG00005907 LOC105011584,LOC103026129,LOC106584418,LOC104949087,LOC106613791 other upstream 222419 11406306 ~ 11409672 (+)
G154798 NA other upstream 270321 11319964 ~ 11361770 (+)
G154756 NA other upstream 546080 11083161 ~ 11086011 (+)
AMCG00005840 LOC100304646,LOC107384145 other upstream 621737 11006798 ~ 11010354 (+)
AMCG00005895 NA other downstream 265333 11903352 ~ 11906087 (+)
AMCG00005987 NA other downstream 1053797 12691816 ~ 12709543 (+)
AMCG00005984 timm13,LOC106573564,LOC107731338,LOC107587003,LOC106613710,LOC107593051 other downstream 1073759 12711778 ~ 12714571 (+)
AMCG00005935 LOC105903927,LOC107660390,LOC105900968,LOC108427173,LOC107596281,LOC102310619 other downstream 1256101 12894120 ~ 12895452 (+)
AMCG00005964 gpx4b,gpx4,LOC107723219,LOC107660382 other downstream 1387745 13025764 ~ 13033408 (+)

Expression


Co-expression Network