AMCG00007520 (mapk6,LOC107588533,LOC107747613,LOC107550634,LOC107704268,LOC107746943)


Basic Information

Item Value
gene id AMCG00007520
gene name mapk6,LOC107588533,LOC107747613,LOC107550634,LOC107704268,LOC107746943
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 21214616 ~ 21224494 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007520
ctaaaaaaaaaaatggcagaaaaGTTTGAAAGCCTAATGAACATTCATGGCTTTGATTTGGGTTCCCGCTACATGGACTTGAAGCCACTTGGCTATGGTGGCAATGGTCTAGTGTTCTCTGCTGTGGACAATGACTGTGACAAAAGGGTTGCGGTGAAGAAGATCATCCTCACCGACCCCCAAAGTGTGAAACATGCCTTAAGGGAAATCAAAATCATCCGCCGCCTTGACCACGACAACATTGTCAAGGTGTTCGAGATCCTGGGACCCAACGGGAGGCAGATGACCGAGGACGTGAGTTCGCTGACCGAACTCAACTCCGTGTACATCGTGCAGGAGTACATGGAGACGGACCTGTGCAAGCTGCTGGAGCAGGGTCTCCTGTCTGAAGGCCATGCCCGGCTCTTCATGTACCAGCTGCTCCGGGGCCTCAAATACATCCACTCAGCTAACGTCCTGCACAGGGATCTCAAACCTGCCAACCTCTTCATTAACACCGAGGATCTGGTGCTGAAGGTCGGGGATTTCGGATTGGCACGCATAATGGATCCCCATTATTCACACAAGGGCCATCTCTCTGAAGGTTTGGTCACAAAATGGTACAGATCTCCCCGTCTTCTGCTTTCCCCCAATAACTACACCAAAGCCATTGACATGTGGGCTGCCGGCTGCATCTTTGCTGAAATGCTGACTGGGAAAACTCTTTTTGCAGGTGCCCACGAGCTGGAACAAATGCAGCTGATACTGGAATCCATTCCCGTTATCCATGAGGAAGATCGTCAGGAGCTCCTCAGCGTCATCCCCGTTTACATAAAGAACGACATGTCCGAGCCACAGACTCCCCTGGCGAAGCTGCTACGAGGTGTCAGTGCTGAAGCACTGGACTTTCTCGAGAAAATCCTGACCTTTAACCCCATGGACCGGTTAACTGCAGAAGAAGCCTTAGCTCATCCCTACATGAGCATCTACTCCTTCCCACTTGATGAGCCCATCTCCAGCCACCCCTTCCACATTGAGGACGAGGTGGATGACATCCTGCTAATGGATGAAAGTCACAGCCACGTGTATAACTGGGACAGGTATCACGACAGCCAGTTTTCAGACCAAGACTGGCATCTTCACAGTAACCACGAGGCTGATGAGGTGCAGAGAGACCCTCGGGCGGTGTCAGACGTGACAGACGAGGAAGAAGTACAGGTAGACCCCCGTAAGTACATGGACGGGGACCGCGAGAAGTTCCTGGATGACCCTGCCTTTGATTCCCTCTTTCCGAGCGAATCTTCCTGGCAACACGAAGACCATCATGAAAACAAGTACTGTGATTTGGAGTGCAGCCACACTTGCAACTACAAGGCGGTCTCCCCCTCATACCTGGATAACCTGGTGTGGCGTGACAGTGAGGTCAACCATTACTACGAGCCCAAGCTCATTATAGATCTGTCTAACTGGAAAGAGCAGAGCAAAGAGAAATTGGATAAGAAGGGGAAATCCAAATGTGAAAAGAACGGCTTGGTGAAGGCTCAGATAGCCCTACAGGAGGCCTCCCAGCAGCTggcagacaaagacaaagagaaGAACCGCAGCTTTGACTTTGATTCTTTCATCGCGAGCACCATCAAACTGAGTCTTCAGCCAGAGCCGTCCGAGGTCGGCCTGCTCAATGAACTGAACAGTTCCGTTTCCCAGATAGAATCCAAAAGCTCCATGTCCAAGTCTGTCAGCCAGGAGAAACAGGAGAAGGGGATTGTCAACCTGGCACAACTGGAGGGCCGGGCGCCCAACCCCTGGGAGAGCCAGTTCGGTAACGTGGGGGTTGGGGAGGAAAGTGGCCTGATAGACGAAGTATGTTGGGATGTGAGGAAGGACGAGCAGTTGGAGAAAGAGAATACGTACACCAGTTACCTGGACAGGCTCTTTAGTAAGCGAGAGGAAACTGAGGCAGTGGAACCAGAGCCTGCAGAAGACAAAATAGttggggtgagagagagggaggagagctTCATTGGGAGAAGTGGGGAGATCGTGTTTAACATGCAGTTTGAATCCTTGGCTCTACCTGGGTTTGATAGTTCTGCTGATTCGCCACTCAAGTCGATACAGGCCACCTTAACACCCTCGGCAGTCAAATGTTCCCCCCAAATTGCCCATAAAACGTACAGCAGCattctaaaacatttaaattaattataagattttttttttttttttatggtagtattacaattattttacttgaATCATTTCATaactctgttttgtttttgtactgcaactattgtttaaaaaaaaaaactagagcatttttaatattatttttttaatttaagggtGCGTTCATAAATTtgtgtaaagtgtaaaataGTGCTGTATAAGAAAGGTGATCAGCCTCATTTGGATAATTTATGTTCACACCCCGATTTGAAAACTGGCATTTCATTTGCACACAGTGTAGACTAACAAAGAtggtgaaaatgaaagaaaagtaatGCAATGCAGGCAAACTGAAACAGTGAGGAATACGCACTAATGGAAGGGGAAGCCGATATCGTGAAACTCAACAGGCCAAAACGGTGGAACTTGTTTCACATGGAACAGGTCTCATAATGGGGAAATACAAGCATGAatatttttagcttttattttaattaaaattttattttaaattttcaaaAGTCTAACTTACTAAGGTATTTTCCTAGAAAGGCGTCCTAAATCTTTTCATACTGTAACATTTCTTCGACACATGATGCCAGCAGCAACCATGAAATGTAGAAATTGGTACACATGTGTTATCTACCTCAAGGTAACAGCAGTTAGTGGGAATCCAGGAGACACGCTAGTGCTTTACAAGCATGTACTTGTATGTCCACTTTGCCAGCAACCTAATCCTGAAACCATTTAGTGcgcatttaattttctttttttttcttttttgtatgcatttgccATAGTGAAGTGTTAAtatacatcattatttattttagtagatctgatatttattttaattttgtagatTCATCGTGACTGTTCCGAATCTTGaagcatttgattattttttttgtttgagcACTATGgtaaggagttttttttttgctagaaAACATTCATCTGCTTGTGGTTAGCAAGCTTTCCATGTTccatcatttgttttctttaggaAAGCACTCACTGtgtaaagtttaattttattgtattacttttttgttattttatttataggtGCTTGATAtttcttcaaagaaaacaaaatcagctttATGAATTTGAAAATGCGCCTAGAAGTCTTAaattcttttttatatatacaaaacttAATGTTAGAATTGTGTGCATGGCAGTAACAGATGGAAGGTACAATACAACTAGGAGTTAAAGGTGAAGTATATTGTAAGTCATtaagttcattttaattgtatgtttttattacaatatatatatatatatatattgtgtgtgtgtatgtgtatatacacgcatactttatttttattttcaagcaaGCATGATTAAATTAGGTTAAAGTGTAGCATGTAGAACATTTCTGGAAATTTGTTTTGACTTTAAATACTGgtacttattttctttatcattgGTTcccctgtttaaaaataaagtaaaataaaaaacaatggcCAGCAAACATACACAA

Function

symbol description
mapk6 Predicted to enable MAP kinase activity. Predicted to be involved in intracellular signal transduction. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Is expressed in brain; otic vesicle; and pectoral fin. Orthologous to human MAPK6 (mitogen-activated protein kinase 6).

NR:

description
PREDICTED: mitogen-activated protein kinase 6

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG:

id description
K06855 MAPK4_6; mitogen-activated protein kinase 4/6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007520 True 3649 mRNA 0.42 5 21214616 21224494

Neighbor

gene id symbol gene type direction distance location
AMCG00007510 unc13c,LOC107712779,LOC108411445,LOC107554226 coding downstream 497474 20713551 ~ 20717142 (-)
AMCG00007511 unc13c,LOC108411445 coding downstream 538282 20648257 ~ 20676334 (-)
AMCG00007508 unc13c,LOC108411445 coding downstream 596454 20606183 ~ 20618162 (-)
AMCG00007507 NA coding downstream 625417 20587572 ~ 20589199 (-)
AMCG00007502 NA coding downstream 722115 20487431 ~ 20492501 (-)
AMCG00007521 leo1,LOC102793363,LOC106594225 coding upstream 33084 21257578 ~ 21264539 (-)
AMCG00007526 NA coding upstream 97738 21322232 ~ 21335390 (-)
AMCG00007527 tnfaip8l3,LOC107746937,LOC107588557,LOC107700582 coding upstream 130026 21354520 ~ 21357001 (-)
AMCG00007529 NA coding upstream 173192 21397686 ~ 21402540 (-)
AMCG00007530 dmxl2,LOC107700583 coding upstream 200439 21424933 ~ 21453417 (-)
G24409 NA non-coding downstream 28455 21180921 ~ 21186161 (-)
G24410 NA non-coding downstream 37022 21150274 ~ 21177594 (-)
G24335 NA non-coding downstream 147883 21060260 ~ 21066733 (-)
G24271 rsl24d1,LOC105018348 non-coding downstream 697143 20513786 ~ 20517473 (-)
G24243 NA non-coding downstream 748181 20465253 ~ 20466435 (-)
G24430 NA non-coding upstream 71884 21296378 ~ 21375032 (-)
G24464 NA non-coding upstream 487028 21711522 ~ 21718039 (-)
G24469 NA non-coding upstream 531097 21755591 ~ 21755946 (-)
G24470 NA non-coding upstream 533393 21757887 ~ 21758169 (-)
G24503 NA non-coding upstream 581626 21806120 ~ 21807061 (-)
AMCG00007500 NA other downstream 741697 20462504 ~ 20472919 (-)
G24217 NA other downstream 882805 20331513 ~ 20331811 (-)
AMCG00007494 NA other downstream 992612 20171329 ~ 20222004 (-)
AMCG00007487 NA other downstream 1291463 19915146 ~ 19923153 (-)
AMCG00007481 fam63b,LOC107750498 other downstream 1414864 19791701 ~ 19799752 (-)
AMCG00007565 gatm other upstream 1116105 22340599 ~ 22358446 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other upstream 1337002 22561496 ~ 22576454 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other upstream 2182434 23406928 ~ 23420303 (-)
G25026 NA other upstream 2747177 23971671 ~ 23972665 (-)
AMCG00007637 NA other upstream 3038196 24262690 ~ 24281564 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000028_06882216_06892678 MAPK6 coding CI01000028 null 6882154 ~ 6892807 (+)