AMCG00007937 (chd6)


Basic Information

Item Value
gene id AMCG00007937
gene name chd6
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37553993 ~ 37574386 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007937
ATGTCCACTGGCCAGGTATTAAAGCACACTCCAGCAGCCTCAACTGCCACTGACCAAAACGCACAAACTACGTTTCCCAGCAGCCCGCACGGTTCGCAGGACCAGCCCAGGGCCCCCGGAGGGCTGACCAATCACTGCATGGCCCACACCAAACAGCCTAGCCTACGCGAGCCGGGAGGGGGCTCGGGCGGCCTGGGCCCCGGCCCCACGCCTCCACTGAACGGAGAGGAGGATGACGGGGGAGGGGGCGCACGGGTGAAGAAGAAACGCAAGAAAAAAGAGAAGCGAGAAGTGTGCGTGTGGCCGAAGGTGGAGAAGGAAACCAAaccaaagaaaaagaaggagacGAAGGAAGTTAAGGATACGCGGAAGAGCAAAACCACCAAGGAGCCCAAGAAGCCCAAGGAGCTGAAGCCGCCAAAGGAGCCGAAGAAACCGCGCAAACCCCGCGACACCAAGCCCACACCCCGCGACAAGAAGAGCCCCCCCCCGCCACAGAAACACCGCGGCCGCAAAGCCAGCAGAGAGCAGGGTCCCCCCCCTCcggaaaagaagaagaaagggaaGAGGAAAAGCGACGCACTGCAGGAGGCGCTAGAGAGTGACGAGACTGTGTCCCTGTCAGCCCCTGGGAATGAGGAGACCAGTGACTCTCTGGATGGCACGAAGCGACGCTCGGGGCGGCAGGTGAAACGCAGGAAGTACAACGAGGATCTGGACTTCAAGGTGGTGGACGATGATGGCGAGACGATCGCTGTGCTGGGCACCGGCCGCATCCCCGCGATCAGTACCTCCACGCTGGCCTGGCAGGCTGAGGAGCCCCCAGAGGATGAAGCCAACATCATCGAGAAGATCCTGGCTGTCCGTGCTGTGAAGACTGAGGCCTCCCTGGGTGAGCTGCCACAGGAGGCCGAGGAATTCTATGTCAAGTACAGGAATTTCTCTTACCTGCACTGCAAGTGGGCCACTTTGCAGGAGCTTGAGAAGGACCCCAGAATCCACCAGAAGATCAAGCGCTTCAGGACCAAGCAGGCCCAGATGAAGCACATCTTCACTGAGCCAGATGAGGATCTCTTCAACCCCGACTACATTGAGGTGGACCGTGTGCTGGAGGTCGCCCACACCAAGGACACGGAGACCGGGGAGGAAGTCACGCACTACCTGGTGAAGTGGTGCTCCCTGTCCTACGAGGAGAGCACCTGGGAGCTGCAGGAGGACGTGGACCCCGGAAAGATCAGGGAGTTTGAGGAGATTAAGAAAATCCCGGATGTGAAATGCACGGAGCGCCCCCCTCCCGACCAATGGAAGAAGCTAGAGATTTCCCGGGATTACAGGAATGGGAACGAGCTGCGGGAATACCAGCTGGAGGGCATGAACTGGCTCCTGTTCAACTGGTACAACAGGAAGAACTGCATCCTGGCTGACGAGATGGGGCTGGGCAAGACGATCCAGTCCATCACTTTCCTGTATGAGATCTTCCTCATGGGCATCCGTGGGCCTTTCCTCATCATCGCGCCGCTCTCCACCATCACCAACTGGGAACGTGAGTTCCGCACCTGGACCGAGATGAATGCCATTGTCTACCACGGCAGCCAGATCAGCCGTCAGATGATCCAGCAGTACGAGATGTTCTACAAGGACGAGCAGGGCACACCTGTTGGCGGGATGTTCAAGTTCCAGGGCGTGATCACCACCTTTGAGATGATCCTGGCAGACTGCCCCGAACTGAAGAAGATCCAGTGGCGCTGCGTGGTGATTGACGAAGCGCACCGCCTCAAGAATAGGAACTGCAAACTGCTGGAGGGCCTGAAGCTCATGAGCCTGgagcACAAGGTGCTGCTGACTGGTACCCCGCTGCAGAACTCCGTGGAGGAGCTGTTCAGTCTGCTCAACTTCCTGGAGCCCCAGCAGTTCCCCTCGGAGACCAGCTTCCTGGAGGAGTTCGGGGACCTGAAGACTGAGGAACAGgtgAAGAAGCTGCAGGCCATCCTGAAGCCCATGATGCTGAGGAGGCTGAAGGATGATGTGGAAAAGAACCTGGCACCCAAGGAGGAGACTATCATCGAGGTGGAGCTCACCAACATCCAGAAGAAGTACTACAGGGCCATCCTGGAGAAGAACTTTACCTTCCTGGCCAAAGGGGCCAACCAGCACAACATGCCCAACCTCATCAACACCATGATGGAGCTGCGCAAGTGCTGCAACCACCCCTACCTCATCACAGGGGCGGAGGAGAAAATCCTGGAGAGCTTCAGGAAGACCTACAGCCCTGAGGCCTGGGACTTCCAGCTGCAGGCAATGATCCAGGCGGCGGGAAAGCTGGTGCTCATCGACAAGCTGCTGCCCAAGCTGATCGCTGGGGGTCACAAGGTGCTAGTCTTCTCCCAGATGGTGCGCTGCCTGGACATCCTGGAGGACTATCTGATCCAGAGACGGTATACCTATGAGCGCATTGATGGGCGTGTGCGGGGCAACCTACGCCAGGCCGCCATCGACCGGTTCTGCAAAGTGGACTCGGACcgctttGCCCAGGCACGCTGTCACCGGATTGGCCAGTCGAAGGCGGTGAAGGTGTACCGGCTGATCACCAGGAACTCGTATGAGCGGGAAATGTTCGACAAGGCCAGCCTGAAGCTGGGGCTGGACAAGGCCGTGCTGCAGGACATCAACCGCAAGGGCAGCCTGAATGGGGTGCAGCAGCTATCAAAAATGGAAGTGGAGGACCTGCTGAGGAAGGGGGCGTACGGCGCGCTGATGGACGAGGAGGATGAGGGCTCCAAGTTCTGCGAGGAGGACATCGACCAGATCCTGCAGCGCCGCACCCAGACCATCACCATCCAGTCTGAGGGCAAGGGGTCCACTTTCGCCAAGGCCAGCTTTGTGTCCTCAGGAAACCGAACTGACATTTCCCTGGACGACCCCAACTTCTGGCAGAAGTGGGCGAAGATTGCAGAGCTGGAGATTGACTCTAAAGCGGAGAAGGAGAGCCTGGTGATCGACACGCCCAGGGTGCGTAAGCAGACTCGTCACTACAACTCCTTCGAGGACGACGAGTTGATGGAGTTCTCGGAACTGGACAGCGACTCGGAGGAGAGGCCCTGCCGCTCACGCCGCCTGAGCGAGAGGAACCGCCGCTACTTGCGCGCAGAGTGCTTCCGTGTGGAGAAGAACCTGCTCATATTCGGCTGGGGCCGCTGGAAGGACATCCTGACGCACGGCCGGTTCAAGTGGCACCTGTCGGAGAGGGACATGGAGCTGCTGTGCCGCGCGCTGCTGGTCTACTGCGTCCGGCACTACAAGGGTGATGACAAGATCCGGAGCTTCATCTGGGACCTCATCACCCCCACCAAGGACGGGAACAACCAGGCACTGCAGAACCACTCGGGCCTGTCAGCGCCCGTCCCTCGGGGCAGGAAGGGCAAGAAGTTGAAGAATCAGCTGTGCCAGCCGGAGATGAAGAACGCAGACTGGCTGGTGAACTGCAACCCCGAGGTGGTGCTGCACGATGACAGCTACAAGAAACACCTGAAGCAGCATTGCAACAAGGTGCTGCTGAGGGTGCGGATGCTGTATTACCTGAAGGCGGAGGTGCTGGGAGAAGCAGCAGACCAGGCGCTGGACGGCGTTTCTGCCAGTAAGCTGGAGGTCGTGCTGCCCGACATCGACTACCTGGAGATCCCAGTGGACTGGTGGGATGCTGAGGCGGACAAGTCCCTTCTCATCGGGGTCCATAAGCACGGGTACGAGCGCTACAACGCTATGCGGGCGGACCCCGAGCTGTGCTTTCTAGAGAGGGTGGGGATGCCTGACGTGACGGCCCTGACAGCGGAGCAGGGCTGTGGCGTTGGCAGCGAGAGCGAGGCGGTTAAAGAGCAGGAGCTGCACATCAAGCCTGAGCCAGAGAGCCAGCCTGAGGTGGCGAGTGAAAAGGAGCTGGGCGAGGAAGAGATTATTGCCTGCAGTGAAACAACAGAGAAAACTGAATGCCCGGCTCCAGTGGTGGAGTGTGTGGAGATGGGCCGGGGGTTGTGGCCGGCAGGCTCTGCCCTGACTGCGCGTCTCCGGCGGCTCATCACCGCGTACCAGCGCTTCACACGCCGCGAGCCGCTGCGGCCCGACTTCCTGCTGCCTGATGCCATGGGGGGCAGCTGGCAGCTGGGCGAGGAGCTACGGAGACGGGCGGCTGAGCCGGACCCCCTCTTCCTGGAGATGCAGAAAAGGTGGACGAGGCGGGAGCAGGCCGATTTCTACCGCACGGTGTCGTCGTTTGGCGTGGTGTTCGACCCTGAGAAGAAGAGCTTCGACTGGACACAGTTCCGTTCGTTCGCACGGCTGGAGAGGAAGACGGACGAGAGTCTGGAGAGATACTTCTGCAGCTTCGTGGCCATGTGCCGCACCGCCTGCCGCCTGCCCCCCAGGAAGGATGAAGGGCCAGTGGAGCCGTCCCTGTTCATGGAGCCCATCACAGAGGAGCGCGCGGCGCGCACGCTGTACCGCATTGAGCTGCTGCGAAAGGTGCGAGAGCAGGTGCTGAGGCACCCCCTGCTGGGCGAGAGGCTGCATCTATGCCGGCCCAGCCTGTACCTGCCAGTGTGGTGGGAGTGCGGCAAGCACGACCGTGATCTACTGCTTGGTGCTGCGCGACACGGCCTGAGCCGCACAGACTACTACATCCTCAACGACCCCCAGCTGTCCTTCCTGGAGGCGCACCGGAACTACGTGCAGAAGGAGAACCGTGGGGGGGTCAGGGGGGTGACTCCTCACCACTGCTGCCTGTATGAGGCCGGCCTCAGCCACTGCCCCTCCCCTACCGAGTACCACACCAGCCCTGCCCCTCCTGCTGCCACACACCCCATCTCTCACGCTCACTCGCACTCGGATACGGCAGAGACCGATGTGGGCAGCGGGCTGTGCGTGGTGCCAGGGGCACGTGGGGGCTTCCTGGACTGCCCCTCAGTGGATGAATCGCTGGAGCTGAGCTCCCTGCAGCACGATAGCCTTGGCACTGACTCTCTGCATGGCAAGCCTGCCAAGGAGGCCTTCAATGGCTTCCCCTTCAACTCGGTGTCGGGCGGGCAGAGCATGCTGAACTCTTACGGGGTGCAGGGCGAGCTGAACGGCCCAGCAGCGGACATGGCGGACAAGCTGCGCAGCGACGTGCTGGTGGGGGAGCAGTACCCCTGCGAGGAGGCTGGGCTGATGACCCCCTCCGCTGAGCTGGACGAGCTGCAGACGCCCTGGGATAGCGCTGAGCACGCTGCCACCGCTGACATTTTCAATGAGTCGGACGCCATCTTGGGGCCTCCCGGGCTGGAGCCGGAGTTCCTGGAGGCAGCGCCGCACGAGGGGCCCCAGGCTGACTGCCTGAGTATGCCCAGCTCCGACTCGCAGAGCACCACTGTGGAGCCGCTGCCTTCCAGCTTCCTGCTGTTCAAGGACATTGCTGTGCCGGATCCCCCTGCAGAGCAGGCCGAGCTGTCGGGGAGCCCTGGGCCCCACTGTGCTGCTGATtacgcccccccacccctcagcCTGCCTGACCTCGGTCTCAACCACCACTGCCCGGCAGGTGAGGAGGAGCCCGAGGAGAAACTGAGTGACTCGGACGTCACCCACAGCGTGCCCAGCCCCGGCGATTGCGCTGACAGTGTGACCTTCGAGTTCGACAAGGAGGAGCTTTCACACGACGGGCACAGCCTGGCCGGGCCGGACCCGGTACAGCCCTGTGAGCCCACGGACGAGACCACGCTTAGCGGGCACACGTACCTCCCCCCGGACACCACCTTGCTGCCCCTCCCACAGCCCCCCCCTGCCTCACCGGGCACCGAGGCTGTCTCGCAGTTCAAGGAAGAGTACTCCACTGAGCCTTTGCCCACGGAGATAAAGCCTGCCCACCTGCCGAGCCCTCAGGGGGAGCAGCTGGGTGCTCTGGGGACAGAGGTGAAGGAGGAGAAGCCGCAGACCACAGCCCTGCTGGTGGAAAGCTACACCGAAGAGCCAAGGTACCCGGCACCCCTGTCGGCCTGCGAAGTGGCGGAGAGCCTACATGAGGTCCGAGAGCCCACCATCGCACAGCTGCTGCAAGAGAAGGCGCTCTATTCTTTCTCCGAGTGGCCCAAGGACCGCGTGATCATCAATCGCATCGACAGCATCTGTCATGCCATCCTCAAGGGGAAGTGGCCCTCCTCCAGCCAGCAGTTCGACTCGCCCAGTTCGCTGTCCGCCCCCCCGATGATCAACAGCACCCCCCAGAGGGGAGGCTACGTCCCTGCCAGGGTGCATTTGGCCCAGAGCCTGAACTACACCATGGGGGCGCCTGTCTCCCACCTGCACAAGGAGAGCCTGCAGGGGTCACACTTCCTGCCTGAGATGAAAAGGAGCCGGGGAGGGTTTGAGTTTGAGGCTGGAGAagcagggggtggggtgggggccAAGCCTGGCCGCGGGGAAAAGATCCCAGTGGCGGTGACGCACAGGGGTGGAGGCCTGGTCCTTAATGGCTGGCAGGAGGCAGCCATGGACCTGTCGAAGGCTGGGGAGTTGGGTGTGGTGAGCGGTGGTGCGTCGGGCACAGTGCACGTGGGCCCCCCCGGGCTAAGCGCCACCGCCCCCCCCAAGATGGCCTCCCTGGCCGGCTTGCAGGGCACGCTGGGCCTGGATATGGCGGGAATCCTGCAGGCCGGCCTCATACACCCTGTCACTGGCCAGATCGTCAACGGCAACCTGCGCCGCGATGACGCCGTGATGCGCAGGAGGCGGGGCCGCAGGAAGAACGCCAGCCAGGAGTGCAGCAAGCAGCCAGCTGCCTCTAGCCCTGTGCCGCCCCCCGACCGGCCCTCCCCCGCGCCCCCACAGCCTGAGAGCCTGGTCTTGGACCGGGAGGCTGCCAATAAGAGTCTGCTAGAATGGCTGAGACAGAACCCCAACTACAGCATGGAGGTGCCACCTTTCACCCCGTCACAGAGCGTGGGGATCCTGCATGGTTTTGTGGAACGGCCCAAGCAGCGGAGGCACCGCTGCAAGGACCCCAGCAAGCTGGATGTCAACTCCCTGACCGGCGAGGAGAGGGTGCCAGTGGTGCACAAGGGCACTGGCCGCAGGCTGGGGGGTGCTATGGCTCCTGCCATCAAGGAGCTGTCGCGGTGGCTGGATGCCAACTCAGAGTACGCAGTGGCCCCCGACTGGGCAGACATCGTCAAGCATTCTGGGTTTCTGCCTGAAGGCAAGTTTAACCGCATCCTGACGGAGCCGGTGTCGCGTGACCCAGGCCCTCGACGCAGAGGCCGGCGTCCGCGCAGCGAGATGACGAAGGCGGCGGGGGTGCTGATGGCAGACTCTTCCTCCGCTATGGGGCCGCTGTTCATGAACGGGCTGATCGGCAGCATGGACCTGGTGAGCCTGCAGAGCCTGCGCAGTGTGCAGGGCATCCCCCTGGCTGGGCTCATGGGTTTCCCTCATGGGTTCGCTGCGGTGTCAGCCAGCGAGGACGCCAAGAACGGGCTGAGCATGCTTCCCATGATGCTCCACGGCATGGCGGCCGTGCAGCCCCACATGTTCAGCGTGAGCGGGCTCCTGAGCCAGCCACCCACCACGAGCACCCCCTCTTGCACCACCACCTCCTCAGTGGGATCGGCGCCCCCCACCGCCACGGTGAGCACCGCAGGATCTGGAAATGGCACCCCTGTCTCCGTTGCCTCCAATGCCGCTCCAGGCAGCCCAGGCAGTACTGGAGGCCCTGCATCGGTCTCTGAGGCTGGGGACACGGAGACGAGGAACGAGGACAAGCTGCTGTCAGAGGGCAAGCCTGTGAGCAGCCCTGCAGAGTCTGCTGGCACCACGCCCACCACGGCAACAGCGACTgcaagcagcagcagtagtggtggtggtgggcaCCTGGCGTTCAACCCTTTCCTGATCCCAGGCGTGTCCCACGGACTGCTCTACCCGCACATGTTCCTCCCCCACGGGCTCAGCATGGCCCTGCCCAGCATGCAGCAGGCCTGCCCCGCGGACAGCACCGGCAGCCCCAAACGGAAGAAGAGGAAactgagggaggaggagggagtggTGGGTTCTGTGGGTGACAGCTGCACAAAGACTGACTGTGCCCCCCCAGAGCCGGCCAGCCTGAGCAGGGACCCCACAGAGCAGACCCTCCCCGAATCTCCCTCGGCAGCTCCTGAGGACGGccgggaagaggaggagggaaaggagGATGAGGgggaggagcagcagcagcagcagcagcagcagcagcaggaggaggaggaggaggaggagcaggcaGTAGAGAAGGAGGGAGATTTACAGTAGACCTCCCACTGTCAACCTCCCTGTTAGTACTGCGCTACCAAGTTACCGGTGTGTGGTGTGTAGGTCAGAGATTTTCATGTAAAGTCTTTTATTATCCACTTATTAATGTTTATAGGTCTCCTGCACAGTACCAAACTTGTGATTATCATCATA

Function

symbol description
chd6 Predicted to enable several functions, including ATP binding activity; DNA binding activity; and DNA helicase activity. Predicted to be located in nucleus. Orthologous to human CHD6 (chromodomain helicase DNA binding protein 6).

NR:

description
PREDICTED: chromodomain-helicase-DNA-binding protein 6

GO: NA

KEGG:

id description
K14436 CHD6; chromodomain-helicase-DNA-binding protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007937 True 8466 mRNA 0.62 36 37553993 37574386

Neighbor

gene id symbol gene type direction distance location
AMCG00007940 NA coding upstream 52262 37496217 ~ 37501731 (+)
AMCG00007938 blcap,bc10 coding upstream 57791 37495198 ~ 37496202 (+)
AMCG00007934 LOC104960738 coding upstream 72822 37469923 ~ 37481171 (+)
AMCG00007931 rims4 coding upstream 207878 37336571 ~ 37346115 (+)
AMCG00007924 NA coding upstream 307186 37244267 ~ 37246807 (+)
AMCG00007942 NA coding downstream 4682 37579068 ~ 37590574 (+)
AMCG00007949 pigu coding downstream 428564 38002950 ~ 38010795 (+)
AMCG00007950 NA coding downstream 436790 38011176 ~ 38014794 (+)
AMCG00007947 NA coding downstream 444506 38018892 ~ 38026850 (+)
AMCG00007951 LOC107385061,LOC106582629 coding downstream 493002 38067388 ~ 38070843 (+)
G27400 blcap,bc10 non-coding upstream 54608 37495159 ~ 37499385 (+)
G27334 NA non-coding upstream 460663 37092649 ~ 37093330 (+)
G27300 NA non-coding upstream 597539 36956182 ~ 36956454 (+)
G27263 NA non-coding upstream 708469 36843981 ~ 36845524 (+)
G27253 NA non-coding upstream 786054 36767653 ~ 36767939 (+)
G27462 NA non-coding downstream 202679 37777065 ~ 37777462 (+)
G27489 NA non-coding downstream 442482 38016868 ~ 38017144 (+)
G27497 NA non-coding downstream 452994 38027380 ~ 38027923 (+)
G27552 NA non-coding downstream 865188 38439574 ~ 38439892 (+)
G27553 NA non-coding downstream 867150 38441536 ~ 38442071 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other upstream 337435 37203870 ~ 37216558 (+)
AMCG00007889 NA other upstream 1251152 36296218 ~ 36302841 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other upstream 1933192 35610982 ~ 35620801 (+)
AMCG00007854 NA other upstream 3759052 33763513 ~ 33794941 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 6113615 31414154 ~ 31440378 (+)
G27518 NA other downstream 570598 38144984 ~ 38146850 (+)
AMCG00007952 romo1,LOC102788570 other downstream 594184 38168570 ~ 38170146 (+)
AMCG00007957 raly other downstream 781543 38355929 ~ 38423155 (+)
G27551 NA other downstream 857659 38432045 ~ 38436595 (+)
AMCG00007970 rab22a,LOC107596793 other downstream 1118353 38692739 ~ 38708915 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033183 chd6 coding NC_007117.7 CM002890.2 51575924 ~ 51666739 (-)
grasscarp (Ctenopharyngodon idella) CI01000340_15334006_15357378 CHD6 coding CI01000340 null 15333088 ~ 15357378 (-)