G24221


Basic Information

Item Value
gene id G24221
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 20344039 ~ 20344379 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU30348
ttgtaggcatatagtcaggcgtatgattaaacaattataccaaacaggtgctaatgatcatcaattcaatatgtaggttgaaacacaatcattaactgaaacagaaacagctgtgtaggaggaataaaactgggtgaggaacagccaaactcagctaacaaggtgaggttgctgaagacagtttactgtcaaaagtcatacaccatggcaagactgagcacagcaacaagacacaaggtagttatactgcatcagcaaggtctctcccaggcagaaatttcaaggcagacaggggtttccagatgtgctgtccaagctcttttgaagaagcacaaagaaac

Function

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30348 True 341 lncRNA 0.42 1 20344039 20344379

Neighbor

gene id symbol gene type direction distance location
AMCG00007493 NA coding downstream 58838 20268671 ~ 20285201 (-)
AMCG00007489 NA coding downstream 201306 20112050 ~ 20142733 (-)
AMCG00007490 NA coding downstream 243318 20061932 ~ 20100721 (-)
AMCG00007491 NA coding downstream 290385 20034695 ~ 20053654 (-)
AMCG00007492 NA coding downstream 311244 20029132 ~ 20032795 (-)
AMCG00007502 NA coding upstream 143052 20487431 ~ 20492501 (-)
AMCG00007507 NA coding upstream 243193 20587572 ~ 20589199 (-)
AMCG00007508 unc13c,LOC108411445 coding upstream 261804 20606183 ~ 20618162 (-)
AMCG00007511 unc13c,LOC108411445 coding upstream 303878 20648257 ~ 20676334 (-)
AMCG00007510 unc13c,LOC107712779,LOC108411445,LOC107554226 coding upstream 369172 20713551 ~ 20717142 (-)
G24219 NA non-coding downstream 4130 20337301 ~ 20339909 (-)
G24218 LOC100538179 non-coding downstream 6871 20335071 ~ 20337168 (-)
G24216 NA non-coding downstream 13137 20330700 ~ 20330902 (-)
G24213 NA non-coding downstream 55197 20288523 ~ 20288842 (-)
G24102 NA non-coding downstream 431123 19867858 ~ 19912916 (-)
G24243 NA non-coding upstream 120874 20465253 ~ 20466435 (-)
G24271 rsl24d1,LOC105018348 non-coding upstream 169407 20513786 ~ 20517473 (-)
G24335 NA non-coding upstream 715881 21060260 ~ 21066733 (-)
G24410 NA non-coding upstream 805895 21150274 ~ 21177594 (-)
G24409 NA non-coding upstream 836542 21180921 ~ 21186161 (-)
G24217 NA other downstream 12228 20331513 ~ 20331811 (-)
AMCG00007494 NA other downstream 122035 20171329 ~ 20222004 (-)
AMCG00007487 NA other downstream 420886 19915146 ~ 19923153 (-)
AMCG00007481 fam63b,LOC107750498 other downstream 544287 19791701 ~ 19799752 (-)
G23838 NA other downstream 1566401 18776360 ~ 18777638 (-)
AMCG00007500 NA other upstream 118125 20462504 ~ 20472919 (-)
AMCG00007565 gatm other upstream 1996220 22340599 ~ 22358446 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other upstream 2217117 22561496 ~ 22576454 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other upstream 3062549 23406928 ~ 23420303 (-)
G25026 NA other upstream 3627292 23971671 ~ 23972665 (-)

Expression


Co-expression Network