XLOC_000603 (fstl1a)


Basic Information

Item Value
gene id XLOC_000603
gene name fstl1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 47459723 ~ 47485360 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001038
GGATATATCCAGCCAGAAGTCTGGATGTCCTTCAGTTTTCACTCTGTCCATGCAGCTGCTTCTCTCCTCTGTCCTCTCATCCCCTGATCATGATTATTAGGACACGTTTTCTATTTATTGCCCTCTCCTTTGTCTGCTGCTATGCAGAGgGGGTGAGGAGCAAAAGTAAAGTTTGTGCTAATGTGTTCTGTGGAGCTGGGAGAGAATGTTCGGTCACAGAGAAAGGCGAACCAACTTGTCTGTGTATCGAGCAATGTAAACCCCATAATCATCCAGTCTGTGGCAGTAATGGGAAAATGTACCAAAATCACTGTGAGCTGCATCGTGATGCTTGTCTGACAGGAGTCAAAATACAAATCTCCCATGACGGACAATGTGAAGAGAAAAAAATGGAAAAGATCATCAACAGCCCAATCGTTTGCTATCTCGCTGACCGTAACGAGTTGAGGAGTCGTGTGATTGAATGGTTACAGTCGGAAGTAGAGCCTGATGGATGGTTTTCAAAAGGATCCAACTTCTCAGATGTCCTGCTGAAGTACTTCCAgAGCTATGATAACGGAGATGCTCAGCTGGATTCAGCAGAATTATTGAAGTTCATTCAGCATAATGAGACCGCAGTAAATATCACCTCTCCTTATGCCGAGGACGAGAACAACCGCTTGCTCAGGAGTCTGTGTGTGGATGCGCTCATTGAGCTCTCTGATGAAAACGCAGACTGGAAACTAAGCTTTGACGAGTTTCTCAACTGTCTCAGGCCTGGATTCAACCCTCCAGAGAGAAAGTGTGCCTTAGAAGATGAGACGTATGAGGATGGTGCTGAGACTCAGATGGAATGTAACCGCTGCATTTGTGCCTGCGGCAACTGGGTCTGCACTGCTGTGATTTGTGATGGTTCAAATAAGTTACAAGCTCTTGAGGAAATGGAGGGAAATAATCAAGAAATGACAGAAGAGGAGTGGGTTCAAAGAGTGGCTGAACTCAATAAGCATCAGGAAACTGTGGAGAAGATGAAAATGGGTGATAAAGAAGTCTGAAGAGAAATCAAGAGACGTCCGGTATCACTTTTACTTGGGCTGTGTTTGAATGGGAAAAGATAGGGATTTTCTTCAGAGTTTATTAAATTCTTTACTGAGGTTTTCAAAAACGGGTTgtaatacagtttcatttgttcGGGGGTAATATAAGTCTGTATGAATTGCACAATTTGAAATACCCTATTTTTGTACATTCAGGGTAATTTGAATCTTTTCATTAAAAGCAATGGTGCTCATATTTCACTTTACAGTAAAtagaacattttaaattatatttgcataaataaagggtttttgtatagtgaaatatttatattttaagcaaaactaagccttctttttcaaataattaatgtattttgGGTTTGGATTTTGGACAATTCCGCATAAATTCATCTTATCTGTGCTTAAGGCATTACTTTTTTTGCACCattttttggaaaacattttagaaaataaaataaacaccaaAAATAA

Function

symbol description
fstl1a Predicted to enable calcium ion binding activity. Acts upstream of or within notochord cell differentiation and regulation of BMP signaling pathway. Located in extracellular region. Is expressed in several structures, including central nervous system; cranium; fin fold pectoral fin bud; mesenchyme; and mesoderm. Orthologous to human FSTL1 (follistatin like 1).

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0030510 regulation of BMP signaling pathway biological_process
GO:0060034 notochord cell differentiation biological_process
GO:0030903 notochord development biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4148 Predicted to enable calcium ion binding activity. Acts upstream of or within notochord cell differentiation and regulation of BMP signaling pathway. Located in extracellular region. Is expressed in several structures, including central nervous system; cranium; fin fold pectoral fin bud; mesenchyme; and mesoderm. Orthologous to human FSTL1 (follistatin like 1).

Ensembl:

ensembl_id ENSDARG00000015559

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001038 True 1511 mRNA 0.40 11 47459723 47485360

Neighbor

gene id symbol gene type direction distance location
XLOC_000602 NA coding upstream 217 47453593 ~ 47459506 (+)
XLOC_000601 gja8b coding upstream 10873 47446032 ~ 47448850 (+)
XLOC_000600 bcl9 coding upstream 48537 47331644 ~ 47411186 (+)
XLOC_000599 morc3b coding upstream 257560 47178529 ~ 47202163 (+)
XLOC_000598 cbr1 coding upstream 286320 47165842 ~ 47173403 (+)
XLOC_000604 lrrc58a coding downstream 744 47486104 ~ 47492961 (+)
XLOC_000605 stn1 coding downstream 14528 47499888 ~ 47513484 (+)
XLOC_000606 sh3pxd2aa coding downstream 100340 47585700 ~ 47686888 (+)
XLOC_000607 cfap58 coding downstream 346259 47831619 ~ 48012257 (+)
XLOC_000608 CR381623.1 coding downstream 411909 47897269 ~ 47897385 (+)
XLOC_000597 NA non-coding upstream 303726 47153190 ~ 47155997 (+)
XLOC_000595 NA non-coding upstream 495495 46959902 ~ 46964228 (+)
XLOC_000593 CU986305.1 non-coding upstream 614047 46827891 ~ 46845676 (+)
XLOC_000592 NA non-coding upstream 723607 46735728 ~ 46736116 (+)
XLOC_000609 CR381623.2 non-coding downstream 428735 47914095 ~ 47914209 (+)
XLOC_000610 NA non-coding downstream 673037 48158397 ~ 48158958 (+)
XLOC_000611 NA non-coding downstream 746496 48231856 ~ 48232312 (+)
XLOC_000613 NA non-coding downstream 1349864 48835224 ~ 48836922 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000119_01297333_01303971 FSTL1A, FSTL1B, FSTL1 coding CI01000119 null 1297231 ~ 1303971 (-)