AMCG00009105


Basic Information

Item Value
gene id AMCG00009105
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 25529829 ~ 25531566 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009105
AGAACACTCCTGCATATCCTGATCATAAAGTAACTATCTCACctcatctcatctcatctcaACTATCATGCAACTCCTAGGCAACAGCAAACTGGCATTTACATGCTGCTTACTTATAATGGGTTTGACCTTTCATTCCTGTGACAACATAAAGGTGCACACCTGCTGCGAAAGCACGAGCAGGCGTATCATTCTCACCCCAATCACAGGCTATGTACTACAGAACAATAAGCCACCATGTGTGGAAGCTGTGATATTCATAAGTGAAGGAAAGCAATATTGCAGCAATCCCAATACACGATGGGCCAAAAAAAAGATTGAAGAACTTAAAAAGGCGGAAGCTGAAAACCAAaaagtgacagaaaacaaagaaaaagaaaaaacacctgcTTCACAATAATATCTCTTCAATCCCAACACTATCTAACTAAGTCAGTCAAAATTTCTGGTTTGAGGTAACTTCCTGGATTGCAGCAAAGCACATGCCAGTGAAGAGAGAACCACAGCTTTGTGGATTCTGTGGCACTAGTTCCTGCAAAGTgccataaacacacaaaagtaTCTGCAATATTTGACGTTTCCCAGAAGTGATAAGCTGAAGCTTAGGTAGAAGAGTgttaagaaaagaaagaatatacaaatttcaaatttcagttttcattttctacaAGATATTGTGCAGTTTATAGGATAATACTTGCAATTGTCTGTTTGAGACTCTGTGGGCATTTATCTCCcaggaatatttaaaatatgtaaatgaatggttactatattataaatatatttatgcaatatttatttttatacattcacAGTTTTACACAAATTGcacattaaaactattaaatattaacttatttatttatttgtgttggtaaccaagaatatttttatttaagaactgtattaacattgtaattatttatttgtgttaaaaatgtaattaatgtttatttatctgtgttgTATTGATAATC
>TU68271
GAACACTCCTGCATATCCTGATCATAAAGTAACTATCTCACctcatctcatctcatctcaACTATCATGCAACTCCTAGGCAACAGCAAACTGGCATTTACATGCTGCTTACTTATAATGGGTTTGACCTTTCATTCCTGTGACAACATAAAGGTGCACACCTGCTGCGAAAGCACGAGCAGGCGTATCATTCTCACCCCAATCACAGGCTATGTACTACAGAACAATAAGCCACCATGTGTGGAAGCTGTGATATTCATAAGTGAAGGAAAGCAATATTGCAGCAATCCCAATACACGATGGGCCAAAAAAAAGATTGAAGAACTTAAAAAGGCGGAAGCTGAAAACCAAaaagtgacagaaaacaaagaaaaagaaaaaacacctgcTTCACAATAATATCTCTTCAATCCCAACACTATCTAACTAAGTCAGTCAAAATTTCTGGTTTGAGGTAACTTCCTGGATTGCAGCAAAGCACATGCCAGTGAAGAGAGAACCACAGCTTTGTGGATTCTGTGGCACTAGTTCCTGCAAAGTgccataaacacacaaaagtaTCTGCAATATTTGACGTTTCCCAGAAGTGATAAGCTGAAGCTTAGGTAGAAGAGTgttaagaaaagaaagaatatacaaatttcaaatttcagttttcattttctacaAGATATTGTGCAGTTTATAGGATAATACTTGCAATTGTCTGTTTGAGACTCTGTGGGCATTTATCTCCcaggaatatttaaaatatgtaaatgaatggttactatattataaatatatttatgcaatatttatttttatacattcacAGTTTTACACAAATTGcacattaaaactattaaatattaacttatttatttatttgtgttggtaaccaagaatatttttatttaagaactgtattaacattgtaattatttatttgtgttaaaaatgtaattaatgtttatttatctgtgttgTATTGATAATCC

Function

GO:

id name namespace
GO:0005539 glycosaminoglycan binding molecular_function
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009105 True 980 mRNA 0.34 4 25529830 25531566
TU68271 False 980 lncRNA 0.34 4 25529829 25531565

Neighbor

gene id symbol gene type direction distance location
AMCG00009101 NA coding downstream 107016 25404668 ~ 25422813 (-)
AMCG00009103 NA coding downstream 161415 25350519 ~ 25368414 (-)
AMCG00009102 NA coding downstream 228356 25294961 ~ 25301473 (-)
AMCG00009098 NA coding downstream 360647 25162585 ~ 25169182 (-)
AMCG00009099 NA coding downstream 386399 25116385 ~ 25143430 (-)
AMCG00009112 uggt1,LOC107748935,LOC107683622,LOC107727334 coding upstream 355845 25887411 ~ 25931495 (-)
AMCG00009113 hs6st1a,LOC107678693,LOC107727332 coding upstream 410559 25942125 ~ 25950002 (-)
AMCG00009114 hs6st1,hs6st1a,LOC107602601,LOC107588870,LOC107727332,LOC107748934,LOC107678693 coding upstream 527975 26059541 ~ 26060656 (-)
AMCG00009118 NA coding upstream 943113 26474679 ~ 26483701 (-)
AMCG00009120 NA coding upstream 959311 26490877 ~ 26494273 (-)
G54613 NA non-coding downstream 5804 25522121 ~ 25524025 (-)
G54610 NA non-coding downstream 14811 25512833 ~ 25515018 (-)
G54598 NA non-coding downstream 41201 25486977 ~ 25488628 (-)
G54597 NA non-coding downstream 43341 25486070 ~ 25486488 (-)
G54594 NA non-coding downstream 50928 25478688 ~ 25478901 (-)
G54682 NA non-coding upstream 558813 26090379 ~ 26090785 (-)
G54697 NA non-coding upstream 718980 26250546 ~ 26250857 (-)
G54706 NA non-coding upstream 876017 26407583 ~ 26407864 (-)
G54792 NA non-coding upstream 1095240 26626806 ~ 26649993 (-)
G54797 NA non-coding upstream 1146684 26678250 ~ 26678588 (-)
AMCG00009106 NA other downstream 67139 25460606 ~ 25462690 (-)
AMCG00009100 NA other downstream 353451 25173677 ~ 25176378 (-)
G54544 NA other downstream 373491 25153266 ~ 25156338 (-)
AMCG00009060 hltf other downstream 1666794 23825229 ~ 23863035 (-)
G54003 LOC107575789 other downstream 3346264 22183088 ~ 22183565 (-)
AMCG00009121 NA other upstream 991067 26522633 ~ 26532410 (-)
G54821 NA other upstream 1261975 26793541 ~ 26796654 (-)
AMCG00009148 NA other upstream 1579430 27110996 ~ 27153475 (-)
AMCG00009151 NA other upstream 1782751 27314317 ~ 27335731 (-)
AMCG00009165 rpl35a,LOC106612432 other upstream 2082032 27613598 ~ 27618172 (-)

Expression


Co-expression Network