Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00009255 |
| gene name | psmd1 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030126.1 |
| NCBI id | CM030126.1 |
| chromosome length | 46242406 |
| location | 30493660 ~ 30515776 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| psmd1 | Predicted to enable enzyme regulator activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within regulation of protein catabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of proteasome regulatory particle, base subcomplex. Predicted to be active in nucleus and proteasome storage granule. Orthologous to human PSMD1 (proteasome 26S subunit, non-ATPase 1). |
| description |
|---|
| PREDICTED: 26S proteasome non-ATPase regulatory subunit 1 isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00009255 | True | 1101 | mRNA | 0.55 | 9 | 30493660 | 30515776 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00009240 | NA | coding | downstream | 249164 | 30236908 ~ 30244496 (-) |
| AMCG00009244 | NA | coding | downstream | 308009 | 30181081 ~ 30185651 (-) |
| AMCG00009243 | xxylt1,LOC107715806,LOC106573863,LOC107718247 | coding | downstream | 322130 | 30162420 ~ 30171530 (-) |
| AMCG00009242 | xxylt1,LOC106573863,LOC107718247 | coding | downstream | 355346 | 30129788 ~ 30138314 (-) |
| AMCG00009236 | lsg1,LOC107573872,LOC107715771 | coding | downstream | 495177 | 29991576 ~ 29998483 (-) |
| AMCG00009254 | psmd1 | coding | upstream | 21074 | 30536850 ~ 30542295 (-) |
| AMCG00009253 | NA | coding | upstream | 28377 | 30544153 ~ 30547821 (-) |
| AMCG00009262 | eif2b5 | coding | upstream | 45972 | 30561748 ~ 30567694 (-) |
| AMCG00009268 | NA | coding | upstream | 135871 | 30651647 ~ 30652128 (-) |
| AMCG00009266 | NA | coding | upstream | 177923 | 30693699 ~ 30696595 (-) |
| G55722 | NA | non-coding | downstream | 1680 | 30491238 ~ 30491980 (-) |
| G55703 | NA | non-coding | downstream | 10287 | 30480779 ~ 30483373 (-) |
| G55648 | NA | non-coding | downstream | 257265 | 30236159 ~ 30236395 (-) |
| G55610 | NA | non-coding | downstream | 517391 | 29975629 ~ 29976269 (-) |
| G55551 | NA | non-coding | downstream | 731495 | 29759527 ~ 29762165 (-) |
| G55760 | NA | non-coding | upstream | 137136 | 30652912 ~ 30655021 (-) |
| G55861 | NA | non-coding | upstream | 293800 | 30809576 ~ 30816091 (-) |
| G55975 | NA | non-coding | upstream | 1399392 | 31915168 ~ 31915373 (-) |
| G55991 | NA | non-coding | upstream | 1434646 | 31950422 ~ 31950673 (-) |
| G56012 | NA | non-coding | upstream | 1482301 | 31998077 ~ 32031970 (-) |
| AMCG00009241 | NA | other | downstream | 237161 | 30249871 ~ 30256499 (-) |
| AMCG00009235 | NA | other | downstream | 502850 | 29977937 ~ 29990810 (-) |
| AMCG00009229 | ccd50,LOC106613514 | other | downstream | 788731 | 29660960 ~ 29704929 (-) |
| AMCG00009215 | gpr17 | other | downstream | 1430630 | 29057941 ~ 29063030 (-) |
| AMCG00009186 | LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689 | other | downstream | 2103564 | 28385083 ~ 28390096 (-) |
| AMCG00009265 | NA | other | upstream | 83698 | 30599474 ~ 30657612 (-) |
| G55878 | NA | other | upstream | 418788 | 30934564 ~ 30937251 (-) |
| G55881 | NA | other | upstream | 428591 | 30944367 ~ 30947211 (-) |
| AMCG00009269 | NA | other | upstream | 457177 | 30972953 ~ 30985995 (-) |
| AMCG00009275 | NA | other | upstream | 635136 | 31150912 ~ 31184966 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|
