AMCG00009417


Basic Information

Item Value
gene id AMCG00009417
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37467254 ~ 37476035 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009417
GAACAGATGGTTGTCATAGCACAAGAAACTGCTGTAAACTTAATTTAAGGTGGGTTTCAATGACATCATGAGAATCGGCATATATATAGGCTACCTCTCCAAAGCTTGGTGATCTTACATTTTGGAACTGTTACATCAATCTCCTGCCTGTGGATCTGTCAGGTGGAAAGAGTCCGAAGACCTTTTGGTGTTTGCcgttgtggttttgtttttctcttgaacCATGTGCTCTGGAAGTTTTGCTAAATGTCTTGGCATCACACTCATCCCTCTAGCTGTTCTTTGCGTCCTTGCAaacattttgctgttttttccaGGAGGCAAAACAGTGTCAAATAATGACTACATCTCCGAAGAGGTGTGGTATTTCGGAGGTATACTTGGGTCAGGACTTCTGATGATCTTCCCAGCTCTGGTGTTCCTGGGACTGAAGAACAACGACTGCTGTGGTTGCTGTGGGAATGAGAACTGCGGCAAGCGCTTTGCGATGTTCACCTCCATTATATTTGCTGCTGTGGGAGTGGTGGGAGCAGGGTACTCCTTCATTGTGTCTGCAGTGGCCATCAACCACGGCCCCAAGTGCAAAACCACTGATGGAAATTGGACATACCCCTTTAACAATGGTGACTATCTGTCCAGCCATTCCTTGTGGAATGCGTGTGCAGAGCCGCAGGACGTGGTGCCCTGGAACCTGACGCTGTTCTCGCTGCTGCTGATCATGAGTGGCATGGAGGCCGTGCTGTGTGCCGTGCAGGGCCTGAACGGGCTGTGCACAAAATGTACTGGAGCTCATCTTTTTCCACTGGCTGTTCTCAGTATGGTGGCTAACTTGCTGTTGTATTTTCCCAATGGAGAGACCAAATACGCCGCGGAAGGGCAGCTGACCGGTTACGTGTGGTTTTCTGGAGGAACTGTGGGCACTGGGCTCCTGgtggCCGTGCCTGCTGTGGTGCTGTCCGGGATGAAGGGAAGGTGCTGCAAAGTGTGCTGTGGACACCTGGACTGTGCCAAAGGCTGCCCCATGATGAGGTCTGTGCTGCTCCCCCTGTTTGGGATGACTGGGTCCCTGTACTGCTTCATCGTGTCGGCCCTGGCACTCACCAAGGGGCCGTACTGCCGCACTGCCAGCGGCTGGGGATACCCTTTCACCAACAGCTCGGGCAGTTACCTGTTTAACCGCACGGTGTGGAGCCGCTGTGACGAGCCGGCCCACGTGGTGCTGTGGAACACGGCCCTGTTCTCCCTGCTGCTCGGCCTGGCGGGCATGGAGTTCATCCTCTGCTTCTTCCAGCTGCTCAACACTCTGCTGGTGAGGCTCTGCGAAGACTGTAATTACTGCGCCCAGAGTGTCAGCCCTGCATGAAGACCTCAGACGGCCTGAGCGCTCTCAAATTGAAAAGAGCTCAGTGGCTTATTGAAGTCACTACAGTGAAATATCCCACACGTCTGGACACAACATCCATGTCTCTTTCCGTGTGAGTGTGGCTTAAAGTGCCACAAGCCAACCACGCCACGCCACTATAGAGAGGACATGAcaggaattatatatattattatatcttgGATCTGTACAAACTGAGTAATACAGATCAGTACAtgtgcaatgtttaaaatgtatttgttcttgtaAATGTAGTGcaacaaacatttcacacagaCCGTTATTCTAAAATCTTGTTCAATGCACAGGTTTTACAAGTCCTGTTTTAGGGTGGTTTAAGCGCGACACCATGTGGATAAAACGTGAAACTGCACATACGtgtgttttctgcttttgttttgtttttgtgcgtctgttgaacattttaacaggccagaaatgtattttgtttgattcattcttctgaaaaatattttgtatgtgtcattacatttttttaaatcccagattctatattgtttgtgttcattaataaaGGAATGCACTCTTTTGAATTGTGCTATAGACTGTGTAACAACAGATAGGTCCTGGAAGATGGATTTCTTCTTCTGTTAACAAACCTCTCAGTACAGCTCTCCCACAGAGACATCTCTTCCAGGCCCGGTGCTGAGTGCAATACAACTCAGATGGCTGTGAGTCCTGTTGGAGTGACAGCTGGGACCTctgtgaagttggcaccccatgtgttcagaatataaataaaaatatatgcattcgtttgtgctgcatttgtgcttg
>TU71046
CGTGTATCATGCTCCCGGACACTTTACTTTGGACTCTTTCCAGGGTGGAGTGGACAACGCCAAGATCAGGGTCCAGTAGGACAGGATGTGGGGGAAATATGTAGAAAACTGAGTAAAGTGTTCcactaaaatatatgtttgaaaagggaaaaaagggaaataatacTGGATGTATTAGGTGATACTGCTTGGTCTGCTCAGATTAACACAGCTGCTCAATAGTATACATCACTGCAGGAGCCTTATCAACACAGTCTTAGtttaatgttgtgtttctgAGGCAGACATTGAAACACGGCAGCTAAACTCAAGCAGTGCTATATATGGAAATATCAAAAGGCCGTTCCAAATGTCCTTTCACCAACCGATAAGGATCTTATCCTCCCTTTTAAGGACATCCTTTCTTTGTTATGACTGGAACACTGATTGTGACTGTGAAGTTGGTGGCGGCTGGACGGGATTCTCTACAAGTTTTGTGAGCTCAGAAATAACTTacacaaagaagaaaaacatatcaAGTTGATTTCAACCAGTTCCGAGGAATGGAATAAGCAAGCTGATACATAAGCCAGAGTTACCTGTTTAACCGCACGGTGTGGAGCCGCTGTGACGAGCCGGCCCACGTGGTGCTGTGGAACACGGCCCTGTTCTCCCTGCTGCTCGGCCTGGCGGGCATGGAGTTCATCCTCTGCTTCTTCCAGCTGCTCAACACTCTGCTGGTGAGGCTCTGCGAAGACTGTAATTACTGCGCCCAGAGTGTCAGCCCTGCATGAAGACCTCAGACGGCCTGAGCGCTCTCAAATTGAAAAGAGCTCAGTGGCTTATTGAAGTCACTACAGTGAAATATCCCACACGTCTGGACACAACATCCATGTCTCTTTCCGTGTGAGTGTGGCTTAAAGTGCCACAAGCCAACCACGCCACGCCACTATAGAGAGGACATGAcaggaattatatatattattatatcttgGATCTGTACAAACTGAGTAATACAGATCAGTACAtgtgcaatgtttaaaatgtatttgttcttgtaAATGTAGTGcaacaaacatttcacacagaCCGTTATTCTAAAATCTTGTTCAATGCACAGGTTTTACAAGTCCTGTTTTAGGGTGGTTTAAGCGCGACACCATGTGGATAAAACGTGAAACTGCACATACGtgtgttttctgcttttgttttgtttttgtgcgtctgttgaacattttaacaggccagaaatgtattttgtttgattcattcttctgaaaaatattttgtatgtgtcattacatttttttaaatcccagattctatattgtttgtgttcattaataaaGGAATGCACTCTTTTGAATTGTGCTATAGACTGTGTAACAACAGATAGGTCCTGGAAGATGGATTTCTTCTTCTGTTAACAAACCTCTCAGTACAGCTCTCCCACAGAGACATCTCTTCCAGGCCCGGTGCTGAGTGCAATACAACTCAGATGGCTGTGAGTCCTGTTGGAGTGACAGCTGGGACCTctgtgaagttggcaccccatgtgttcagaatataaataaaaatatatgcattcgtt

Function

GO: NA

KEGG:

id description
K24919 TM4SF4; transmembrane 4 L6 family member 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009417 True 2179 mRNA 0.48 9 37467254 37476035
TU71046 False 1570 lncRNA 0.43 3 37467273 37469308

Neighbor

gene id symbol gene type direction distance location
AMCG00009416 rnf13,LOC106613488,LOC107551383 coding downstream 64373 37360085 ~ 37402881 (-)
AMCG00009412 LOC103360179 coding downstream 135227 37326755 ~ 37332027 (-)
AMCG00009406 tsc22d2,LOC107097579,LOC107727513,LOC105899227 coding downstream 161834 37300528 ~ 37305420 (-)
AMCG00009411 NA coding downstream 187502 37278886 ~ 37279752 (-)
AMCG00009407 NA coding downstream 189705 37275462 ~ 37277549 (-)
AMCG00009422 NA coding upstream 49496 37525531 ~ 37528188 (-)
AMCG00009426 NA coding upstream 54688 37530723 ~ 37535894 (-)
AMCG00009423 NA coding upstream 61486 37537521 ~ 37543355 (-)
AMCG00009425 NA coding upstream 68204 37544239 ~ 37550476 (-)
AMCG00009424 NA coding upstream 78778 37554813 ~ 37559533 (-)
G56831 LOC106583953,LOC106560594 non-coding downstream 44733 37418414 ~ 37422521 (-)
G56818 tsc22d2,LOC105899227 non-coding downstream 99585 37300544 ~ 37367669 (-)
G56795 NA non-coding downstream 199423 37201032 ~ 37267831 (-)
G56742 NA non-coding downstream 299010 37167994 ~ 37168244 (-)
G56710 p2ry1 non-coding downstream 595431 36869548 ~ 36871823 (-)
G56861 NA non-coding upstream 39934 37515969 ~ 37517654 (-)
G56927 NA non-coding upstream 160670 37636705 ~ 37734188 (-)
G57013 NA non-coding upstream 642393 38118428 ~ 38118843 (-)
G57015 NA non-coding upstream 649114 38125149 ~ 38125363 (-)
G57016 NA non-coding upstream 649946 38125981 ~ 38127340 (-)
AMCG00009408 NA other downstream 72266 37285576 ~ 37394988 (-)
AMCG00009409 selenot,LOC107681817,LOC106599070,LOC107708642 other downstream 181889 37280548 ~ 37285365 (-)
G56800 NA other downstream 247178 37215960 ~ 37220076 (-)
G56568 NA other downstream 1594657 35872123 ~ 35872597 (-)
G56546 LOC103376870 other downstream 1927444 35538887 ~ 35539810 (-)
AMCG00009437 NA other upstream 413467 37889502 ~ 37908968 (-)
G57155 dner other upstream 1104250 38580285 ~ 38582820 (-)
AMCG00009472 NA other upstream 1351930 38827965 ~ 38837594 (-)
AMCG00009521 gigyf2,LOC107728389 other upstream 2645428 40121463 ~ 40157471 (-)
AMCG00009571 LOC107087052,LOC105890629 other upstream 4338524 41814559 ~ 41826934 (-)

Expression


Co-expression Network