AMCG00009884


Basic Information

Item Value
gene id AMCG00009884
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 3845420 ~ 3894764 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009884
GCTGTCCCATAAGTCCGTTCGCTGTTCCTGTCTCTTTCAGAAAGAAGGTCGCGCCGGCAGTGCAGTGGAGTGAAGAGAGAAATAAACCCAAAAGCAGAAAAATCTTAGAAACCAGCCATGTTGGGCCAGGCTGTTCGCAGGTTCACTACCTCCGCCATTCGCAGCTCTCATTACGGAGAAGGACCAGGAAAGAACCTTCCTTTCTCAGTGGAGAACAAATGGAGGCTTTTGGGCATGATGGTCCTCTTCTTCGGCAGTGGTTTCACATTCCCCTTCATTGTGGTCAGACATCAGCTCTTGAAGAAATGAGGCTCTAATGCCCACTGTAATGCATACCAGGTATATTTGATTATTGGGAGCTATATTGTGATTGGGCTCGTTTGAAATTCATCAGCCTGTTTGGGTGTGCATTACCAAATGAAG
>TU95100
ATAAGTCCGTTCGCTGTTCCTGTCTCTTTCAGAAAGAAGGTCGCGCCGGCAGTGCAGTGGAGTGAAGAGAGAAATAAACCCAAAAGCAGAAAAATCTTAGAAACCAGCCATGTTGGGCCAGGCTGTTCGCAGGTTCACTACCTCCGCCATTCGCAGCTCTCATTACGGAGAAGGACCAGGAAAGAACCTTCCTTTCTCAGTGGAGAACAAATGGAGGCTTTTGGGCATGATGGTCCTCTTCTTCGGCAGTGGTTTCACATTCCCCTTCATTGTGGTCAGACATCAGCTCTTGAAGAAATGAGGCTCTAATGCCCACTGTAATGCATACCAGGTATATTTGATTATTGGGAGCTATATTGTGATTGGGC
>TU95101
ATAAGTCCGTTCGCTGTTCCTGTCTCTTTCAGAAAGAAGGTCGCGCCGGCAGTGCAGTGGAGTGAAGAGAGAAATAAACCCAAAAGCAGAAAAATCTTAGAAACCAGCCATGTTGGGCCAGGCTGTTCGCAGGTTCACTACCTCCGCCATTCGCAGCTCTCATTACGGAGAAGGACCAGGAAAGAACCTTCCTTTCTCAGTGGAGAACAAATGGAGGCTTTTGGGCATGATGGTCCTCTTCTTCGGCAGTGGTTTCACATTCCCCTTCATTGTGGTCAGACATCAGCTCTTGAAGAAATGAGGCTCTAATGCCCACTGTAATGCATACCAGTTCTGCTCCAT
>TU95102
ATAAGTCCGTTCGCTGTTCCTGTCTCTTTCAGAAAGAAGGTCGCGCCGGCAGTGCAGTGGAGTGAAGAGAGAAATAAACCCAAAAGCAGAAAAATCTTAGAAACCAGCCATGTTGGGCCAGGCTGTTCGCAGGTTCACTACCTCCGCCATTCGCAGCTCTCATTACGGAGAAGGACCAGGAAAGAACCTTCCTTTCTCAGTGGAGAACAAATGGAGGCTTTTGGGCATGATGGTCCTCTTCTTCGGCAGTGGTTTCACATTCCCCTTCATTGTGGTCAGACATCAGCTCTTGAAGAAATGAGGCTCTAATGCCCACTGTAATGCATACCAGGTNNNNNNNNNNNATGGACAAACTTGCAGAACTCTTTTATGGAAGAATGGGAGACTTTAATTCCttgtaaataaaatggataCAACCAAAATCTTCTGATTTGTGCATTCACcttattttgtaatacaagTTCCTTATTTTCTTAGtgtaaaatgattaatgatTTTTAGATACAAGTGAAGCATTTCAGTGCTCAAATATAATCAGGCCAATGGCAATGTAATATTCCTCTGTTCCTCTTGTGGACCCAGTTGAACAGCTGAAAGCCTTcacatatgtaaaatattgcatattGGTGTTTTGAAGGGATTCTATTATACATCCTTCGACATTTGTTAGAAGTATATTATGTTGGTTCACCAAATCTCACCCCGAAGCTATTTAAAAGATAACCATAAATTCTGTAAAATTC

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009884 False 423 mRNA 0.47 2 3893047 3894764
TU95100 False 368 lncRNA 0.48 2 3893094 3894756
TU95101 False 342 lncRNA 0.49 3 3845420 3894756
TU95102 True 743 lncRNA 0.39 3 3891185 3894756

Neighbor

gene id symbol gene type direction distance location
AMCG00009882 rasa1,LOC106580138 coding downstream 91800 3738692 ~ 3753620 (-)
AMCG00009883 NA coding downstream 114994 3619579 ~ 3730426 (-)
AMCG00009873 NA coding downstream 716554 3123142 ~ 3128866 (-)
AMCG00009875 NA coding downstream 752773 3078523 ~ 3092647 (-)
AMCG00009877 NA coding downstream 782090 3056669 ~ 3063330 (-)
AMCG00009887 NA coding upstream 736500 4631264 ~ 4631797 (-)
AMCG00009886 LOC108229514,LOC108247034 coding upstream 749154 4643918 ~ 4647856 (-)
AMCG00009892 NA coding upstream 840841 4735605 ~ 4783365 (-)
AMCG00009893 NA coding upstream 899660 4794424 ~ 4870723 (-)
AMCG00009895 NA coding upstream 993535 4888299 ~ 4997674 (-)
G76071 NA non-coding downstream 680866 3164348 ~ 3164554 (-)
G76070 NA non-coding downstream 692564 3152149 ~ 3152856 (-)
G76069 NA non-coding downstream 696332 3148723 ~ 3149088 (-)
G76005 NA non-coding downstream 992472 2852660 ~ 2852948 (-)
G75992 NA non-coding downstream 1000468 2763906 ~ 2844952 (-)
G76183 NA non-coding upstream 296015 4190779 ~ 4191037 (-)
G76190 NA non-coding upstream 426419 4321183 ~ 4321616 (-)
G76197 LOC103376870 non-coding upstream 489105 4383869 ~ 4430390 (-)
G76265 NA non-coding upstream 1200421 5095185 ~ 5104471 (-)
G76280 NA non-coding upstream 1329902 5224666 ~ 5228786 (-)
G76164 NA other downstream 48508 3796572 ~ 3796912 (-)
G75872 NA other downstream 2063259 1760569 ~ 1782161 (-)
G75706 NA other downstream 2950483 894472 ~ 894937 (-)
AMCG00009833 NA other downstream 3097237 742453 ~ 748183 (-)
G75607 NA other downstream 3222644 620342 ~ 622776 (-)
G76463 NA other upstream 1999911 5894675 ~ 5900984 (-)
G76684 NA other upstream 2771842 6666606 ~ 6670126 (-)
G76752 LOC101154678 other upstream 3041954 6936718 ~ 6937068 (-)
G76762 NA other upstream 3163041 7057805 ~ 7062821 (-)
AMCG00009962 NA other upstream 3390098 7284862 ~ 7289694 (-)

Expression


Co-expression Network