AMCG00010965 (pacrg,LOC107697704,LOC107583491,LOC107695182)


Basic Information

Item Value
gene id AMCG00010965
gene name pacrg,LOC107697704,LOC107583491,LOC107695182
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5905146 ~ 5924778 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010965
ATGAAGAACGCTGTGGTCGTGGGGCCTCCTGCGGCCGGAGCGTTCCGTGAGCGACTGGCGAAGCCCACAGCCTTCCGCAAATTCTGCGAGCGCGGGGACTTTCCAATTTACCTCGATCAGGATGTGAAGGGAAACAAGATAACCTGGAAGATGGAGATCGAGAAGCTGGACTACAACCACTACCTGCCACTGTTCTTCGATGGGCTGTGTGAGACTGTGCACCCCTACGAGTTCTTCTCACGGCAGGGCGTGCACGACTTGCTGGAGCATGGCTGCACCAAGATCCTGCCTGTAATCCCCCAGCTGATCATCCCCATCAAGAATGCTCTGAACACTCGAAACAGGCAGGTGATCTGCACCACGCTGAAGGTCCTGCAGCACCTGGTGGTCTCTGGAGACATGGTGGGAGAGGCCCTGGTGCCCTACTACAGACAGATCCTGCCCATCCTCAACATCTTCAAGAATGCTAACATCAACATTGGAGATGGGGTTGACTTCAGCCAGCAGAAGAGGGAGAATGTTGGGGATCTGATCCAGGAGACCCTGGAGATCTTTGAGTGCAATGGAGGGGAGAGGGCCTTCATCAGCATCAAGTACATGGTTCCCACATACCAATCCCGTAAGGGATTCTAAGGGGGCATTCAGCTACACATCCTTCTATGCGCTTCCAGTACTGTCATGAGCTGTAGAGCTGGGGAAGAGAGGGAAGTAGAGGCCCCAAGTGCAGAGCGTGGAAGAGGTGGTCAGAAACAGACTGAGGCTAATGAAGGCAAGGCAGAAGGCATAGTCAAAGTCACAGCCAATGGTTCAGTAGACCAGACAAACCGTCTGTGTGTCGAAGGGAAATCCAAAAGTTGAGATCAGAAGAAGTCAGAGGTTGTGGAAACGAGATTACCAAGGGAACTGCTCAGAAATGCAGCTGTGAGGCAAATGACTTCACACTGAATGTGAGCCGGGGGGGTGTATACAGAGACACTGT

Function

symbol description
pacrg Predicted to enable Hsp70 protein binding activity; Hsp90 protein binding activity; and chaperone binding activity. Acts upstream of or within determination of left/right symmetry. Predicted to be active in cytosol; neuron projection; and vesicle. Is expressed in several structures, including Kupffer's vesicle; axis; forerunner cell group; nervous system; and pronephros. Orthologous to human PACRG (parkin coregulated).

NR:

description
parkin coregulated gene protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010965 True 979 mRNA 0.53 5 5905146 5924778

Neighbor

gene id symbol gene type direction distance location
AMCG00010959 NA coding downstream 136872 5748383 ~ 5768274 (-)
AMCG00010961 NA coding downstream 187928 5705767 ~ 5717218 (-)
AMCG00010960 NA coding downstream 211361 5693444 ~ 5693785 (-)
AMCG00010958 NA coding downstream 231469 5655019 ~ 5673677 (-)
AMCG00010954 qkia,LOC107697705,LOC107721620,LOC107590898,LOC107711937,LOC105908305 coding downstream 252118 5644276 ~ 5653028 (-)
AMCG00010968 NA coding upstream 53144 5977922 ~ 5989279 (-)
AMCG00010971 dnajc8 coding upstream 79185 6003963 ~ 6014817 (-)
AMCG00010972 NA coding upstream 104102 6028880 ~ 6032424 (-)
AMCG00010970 NA coding upstream 149833 6074611 ~ 6077628 (-)
AMCG00010973 htr1d coding upstream 248030 6172808 ~ 6173935 (-)
G103362 NA non-coding downstream 289293 5558677 ~ 5615853 (-)
G103329 NA non-coding downstream 526920 5359975 ~ 5378226 (-)
G103309 NA non-coding downstream 570889 5331732 ~ 5334257 (-)
G103149 NA non-coding downstream 1479574 4425354 ~ 4425572 (-)
G103095 NA non-coding downstream 1752398 4152518 ~ 4152748 (-)
G103473 NA non-coding upstream 459703 6384481 ~ 6386604 (-)
G103503 NA non-coding upstream 589085 6513863 ~ 6514123 (-)
G103539 NA non-coding upstream 699303 6624081 ~ 6627452 (-)
G103556 NA non-coding upstream 830515 6755293 ~ 6762139 (-)
G103645 NA non-coding upstream 1191206 7115984 ~ 7171805 (-)
G103395 NA other downstream 156582 5704770 ~ 5748564 (-)
AMCG00010946 NA other downstream 579722 5284330 ~ 5325424 (-)
AMCG00010939 NA other downstream 764637 5134053 ~ 5140509 (-)
AMCG00010937 NA other downstream 776005 5115715 ~ 5129141 (-)
AMCG00010925 srsf10,LOC108426370,LOC101486875 other downstream 1254740 4642652 ~ 4650406 (-)
AMCG00010966 NA other upstream 40355 5965133 ~ 5974307 (-)
AMCG00010988 NA other upstream 703792 6628570 ~ 6644723 (-)
G103832 NA other upstream 2013359 7938137 ~ 8027031 (-)
AMCG00011051 NA other upstream 2894773 8819551 ~ 8864051 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 3297490 9222268 ~ 9236228 (-)

Expression


Co-expression Network