AMCG00011005


Basic Information

Item Value
gene id AMCG00011005
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 7392972 ~ 7408696 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011005
GCAGATCTGAAGGAGACAGTGCTCCTGGCAGAGATGTCGAAGGCTCCAGTGTCCAAGTCCATGTCCCGGTCACGTTCTGGATCGGGCTCCCGCTCCCGGTCCCGCTCCTTCTCCAGGTCACGGTCCAGGACCCGGTCCCGCTCCCGCTCCAGGAAGCACCGCTACAGGGAGCGGAACTACCCCAGGGAGTATCAGAACAACCGCGAGTTCCGGGGCTACAACCGAGGCTTCCGCAGGCCTTACTACTATCGTGGGAGAGGTCGGGGATACTATCCACGGGGCCGCTACCAACGAGGAGGAGGCTATGGCAATTACAGACCCAACTGGCAGAACTACCGGCAGCAACCCCAGCAGCACCATCCCCACAGCCCCAGACGGGGACGCTCCCGATCCAGGTCTCCCAAGAGGCGATCCGGAAGCCCCAGGTCGAGGAGCCGTTCTCGGTACACCGACCACTCTTCCTCTGGCCGCTCCCGGCGATCCAGGGGGTCCTCCTCCTCTGACTCACGCTCTTCCTCCACCCATAGCCGCTCCGGGTCCACGAAAAGGAATGCCGCAAAAGAGCTGAAGGAAGGTGGGGGGCCCGTGTCTGCACCCAAGGAGGCGCAGAAGGCCGGGTCCAGGGACGAGGAAGCGATGGCAGCGGCAGGCAACGACAACGCGCCTGAGAGGCCCTCCAGCAGCTGGCAGGGCTTGATTGATTACGACACCAGCCCCAAGCGGGCCAGTCCCGTTGTCCGCTCCGCAATTATAGTCAGTCAGGGTTCAGCCGCTGCCCACCCCAGTCCTTCACTGCAGTCGATCGCGGTCAAGAGACCCAGCCCAGCGGTCAAGGGCTCTCCAAGTCCCTCTGGGTCCAGTTCTGCCATACAGAGTAAATCTCTGATTGGCGCCCCTTGGCAAAACACTGGCACAACCCCAAGTAACAAGAGTCCACCACAGCAAAGTCCAACTGCTGTCTTTTCTGGCTTTGGGTTCTTCTCAAAGGAGGACCTCAGGGCTGGAGAGAAAAGTTCTTCAGTTTCAtcagcatttaaaaaGTTCTTGGAGGAACACAAGAGTAAAAATCAGGTACCAGAATGGGAGAATGGACGAGACAAGGAGCAGAAAGCTGcagagggtgagagggagaaAGGCAACAGTAAGACTGGCGCCTTCGAAAGGGGGGTTCCCTACGGTAATCTCAAGCCTGACTACTATGGCAAAAGCgagaaagagaaatacaaatatgggGACGAGTTCGAGATGAGCTCGGCTGCAGAATTCTTTAAGGGGTCTCAGTTCGGCGCTTCAGAAGCTGCAGAGGAACCGGAGAAGAAACACAAGGGGAGGAACCAAAAGGAACGTGAAATGGAGGATGAGCCAAAGCATAAGAGCAAAATTACTGTCACTACGAATCGGGATATGTTCGACGAGCGGTTCAGTAAGTGGGAGGATCTGGCATACTTCCCCTCGGGTAAGGAGAAGCTCAGAAAGGAGGAGGATGCTGTTGAAGATGATATGGACGATATGGAAGAGGAGCTATACAGGAGCCGGAAGCAGGAACGGGCGGCGGCGGCCGCTGCAGCAAAGAAGGCAGAGGCGAGCGGCATCCGGGACTTTTCTCCGGATAAAATGCCCAAGGCCAGCcggaaaaaggaaaaaccagGCCAGAGCCCGTCCTCGCCTCCCAGAAGGAGCTCAGAGAACAGAGACAGGGAATTGTTTAATGTTAGGAGGGATGATTCCCCTCCCAAACCTCCCCCAGTGTTCCCTGGGAAGCGCGGTGCTGAAGTTAATGTTCGAATGGATTCCTTCCGGGAAGATTTTGCAagCTCTTCTGGCATCTTGGCAAATGAACGTCGGTTCTCTAAAGATCTTGTGCATCCCAGCAAAAAAGACCAGGAGTTTCGGTCCATCTTTCAGCACATTCAGGCCACACAGTTACGAAGAAGCCCCTCTGAACTTTTTGCTCAGCATATCGTCACCATCGTTCACCATATCAAAGCACAGCATTTCGAGTCCTCAGGGATGACATTAAATGAGCGTTTCGCCATGTACCAAAGAAGAGCAGCGGAGAAGGAAATGATGCAACCAAGGAAGAGCCCGGAGATTCACCGgaGAATTGATGTTTCTCCCAGTGCTTTTAGGAAACGCTCTCATCTTTTTGAGGAAATGAAAAGCTCCCGGGAAAGCAGTGCCAAGgacgatgttaaaaaaatgaagggtGACTCAATGGATCTGCGTCTTGACATTGAGCGTCGAAAAAAATACTCCAGTAAGGAGCGAGAGCACAAGAGAGATGCGATAAGGGATTCGGGAGAATCCCGGGGATCAAGTGTAAGCAGGGAGAGATCCACTGAGAAATCATCCAAGCATCACAAGAAGACAAAGAAGCGCAAGAAGACACGAGAGCGTTCGCGGTCCTCTTCGGCATCATCCTCATCTTCCCGCTCCTACAAAGGAGGAGACTATCCCGAGGAGACGGAGCCCAAAGAGGAAGGCTTCAACAAGGCCCGGCTGGGGTCACGTGATTATGGTGGCCCAATGGAGCGTGGCAGGGCCAGAGGAGGCTTTCAGTTCAGAATAAGAGGCAGGGGGTGGAACAGGGGTAATTATCCAGGAAACAATAGCAATGgtaacccccccaaccccatcAATCCAATACGATCCAAGGACGAGGAGTGGGATCCAGAGTACACACCCAAGAGCAAAAAATATTACttgCATGATgacagggaaggagagggagagaagaagtGGATCGACAAtcgaggaagaggaagaggcaCCTTTCAGCGTGGCAGAGGACGTTTCATGTTCAGAAAGACCAGCAACAGCCCCAAATGGACGCATGACAAGTTCCAGGGAAGCGGAGAGGAGGGGGAACTGCCGGACGAGGACAGTGACGCAGAGAATAAAGACGAAAGCAAAGTGGGGGGCACGGCCGCCACCGAGCAGTAGGTTTTGGTAGCCCACCTTGAAGCAGTTGAGGTACCAGGTACCTTTGCCCATTCATGATCTAACATCAGTGGCTCCTTACATCACATAATGTAACATCGGCACTGTCCCAGAATTAATGACTAGTTACCCCCAGAACAGAATGGATCAGGGGGGAGGGAAATTAAGAAACCGTTACActgaagttaatttaaaaacaaaacaaaaaacctagAAAAATGGCTTCAGTGTTCAAGATGTTTAAGCAGTTGTGCATGGTTAAATTCTTTGgagtatttcttaaaaaaaaaaaaaaaacaatacaaaaaaaaaaactttcttatGCAACACGAATAGTTGTGAGGATTAATTGGAGTTAAtttctgtgatttttgtttttgatccattttattttgtaattgtttttgctttgaagtaGAAGCACTGGGGGGATGTAGTCTGCAGGGTCCAATTGTTTTATACAGAGACGGGAACCTGGCTGAGACACATGCTGCATATAGAAGCACTGCATGACTGCAGGATTTAATCAGACAGGCTGGGAAGATTTTGGGTATAAATGACTTTGGAGGCTTTCAGAATACCCCCTAAATTAATAAGACGTATAGGAATTAGGAAAACAAATTCAGCTGTACCCGGGGGAAAGATTTAAATCTCCCTTcccttccttctttttttttaacatttgtttttgcaaagcTTGTGTTGGGGTGTTGGAGGTTGAGATCTGTGTGCCTTAGATGTGTacatatctacatatatataacaatggcagtccttttgtttttagtttcctcttgtttaattttgttgtctTTCTCTTGCTATACTCACCTGATAACAACACTGCTTTCTATGTGGTGGCTGATGACAGATCTTGTCTAATAAGGAATAAGTTCAACTAAATTCTCTGCACAGACCCTTCTTGGACTATGGGACCAATATACTGCGGGTCAAGGCTCATATCGAACAGACTGACAAGGCTTCCTTTAAACCTTGCGCAATGTAAAACGTTTGCAACCAATTGCAAGTGAAGACCACCTCGTTTTTTGTGCAAAAAACGAGTTCGAAGACTGCAGTCAGAAGGTTAGCCAGTATTGGGTTGTCGATGTATCCAGTTacctaaaaatatttttttcagaccTAGACAACATTCAAAGGTTTTAAGTTTGTGCCTCTGAAACAACATTTTTACAGAGaattcacattttccatttaaataagcaaaaggggttaattaaaaaagacaacctCGAGCTACAAATTTCATAAAACTTTCTAAATAATTGCTGCCTTTTTgtgtgaaaaactaaatcaaatgcTCTTGTAATTGTATTCTGTGGGTATTTTTCTATCATTGTATTGAACAGATAgagcttttttcctttttaagcttttgcttttttctttaatgaccAGCTTGTATTGCAGCAAAGTGCAACCCAGTCTTcctacaaatgttttttttttttttttttaaatatttttatttagtttgttttgctgtCCAAAAAGAACCATCGTTCTACATTTAAAAGGCAGTTTAAGTTGCCTTTTCCAAAccaattgaaaatattaaatttggATGTAACCGTTTGCATAATATCCTAGTGCCGTCTCGTCAGTTGCGTTTTAAAATGACAACCTTGATCAGTTGCACTATGTTCATTTTGTAGGCTTTGTTCTGGACTGCACTGTGTTTTGATGTACAGGAtagactgtttttttgttttattttgtttgttggttttctgtttaattttagCAGGAGGAAAAACTCccattttattatactttttttttaaatg

Function

GO: NA

KEGG:

id description
K13112 THRAP3; thyroid hormone receptor-associated protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011005 True 4745 mRNA 0.47 10 7392972 7408696

Neighbor

gene id symbol gene type direction distance location
AMCG00011006 NA coding downstream 2406 7365242 ~ 7390566 (-)
AMCG00011003 NA coding downstream 83551 7308639 ~ 7309421 (-)
AMCG00010997 NA coding downstream 266606 7113635 ~ 7126366 (-)
AMCG00010992 ppce,LOC107654745,LOC107710331,LOC105909065,LOC107602379 coding downstream 454746 6925770 ~ 6938226 (-)
AMCG00010987 NA coding downstream 617466 6764826 ~ 6775506 (-)
AMCG00011009 NA coding upstream 42373 7451069 ~ 7507166 (-)
AMCG00011008 NA coding upstream 120761 7529457 ~ 7551615 (-)
AMCG00011012 fndc5b,fndc5 coding upstream 223369 7632065 ~ 7647012 (-)
AMCG00011013 NA coding upstream 324727 7733423 ~ 7742566 (-)
AMCG00011022 hdac1 coding upstream 576585 7985281 ~ 7994619 (-)
G103666 NA non-coding downstream 159658 7230954 ~ 7233314 (-)
G103658 NA non-coding downstream 203389 7189085 ~ 7189583 (-)
G103645 NA non-coding downstream 221167 7115984 ~ 7171805 (-)
G103556 NA non-coding downstream 630833 6755293 ~ 6762139 (-)
G103539 NA non-coding downstream 765520 6624081 ~ 6627452 (-)
G103794 NA non-coding upstream 368312 7777008 ~ 7779941 (-)
G103859 NA non-coding upstream 647785 8056481 ~ 8056683 (-)
G103893 NA non-coding upstream 758999 8167695 ~ 8167924 (-)
G103900 NA non-coding upstream 932667 8341363 ~ 8341588 (-)
G103903 NA non-coding upstream 933888 8342584 ~ 8342818 (-)
AMCG00010988 NA other downstream 748249 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 1418665 5965133 ~ 5974307 (-)
G103395 NA other downstream 1644408 5704770 ~ 5748564 (-)
AMCG00010946 NA other downstream 2067548 5284330 ~ 5325424 (-)
AMCG00010939 NA other downstream 2252463 5134053 ~ 5140509 (-)
G103832 NA other upstream 529441 7938137 ~ 8027031 (-)
AMCG00011051 NA other upstream 1410855 8819551 ~ 8864051 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 1813572 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 2192681 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 2332437 9741133 ~ 9743785 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010099 thrap3a coding NC_007127.7 CM002900.2 35870456 ~ 35901707 (+)
grasscarp (Ctenopharyngodon idella) CI01000016_02817855_02829699 NA coding CI01000016 null 2817855 ~ 2830457 (-)