AMCG00011024 (ccdc28b,LOC103357048,LOC102215669,LOC106535222)


Basic Information

Item Value
gene id AMCG00011024
gene name ccdc28b,LOC103357048,LOC102215669,LOC106535222
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8082418 ~ 8090075 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011024
CCGCGCATTgagatttatttgtgttcatatGAGGATAAAGATCCTCCGATATCTGCAAGGTGCATGGACGATTGGACGggatttcaaaaatattaaacaagaaGCTGCCGGTCCGAAGTGCTTAACTAGTGTTGAATCATTTTTGGGATCATTAACGTTTATTTTTCCCAGATTTGTTTTGCAGCTCCAGTCTTTACGCCCCCCCTGCGTTCTCTGCCTTCCCTCTCAAACCGTTCAAAGCCGTGCCCAGGGGAACTCTGGGGGACATGGAGGACAAGCGAAAGAAGAGGAGCCCCAAGGTGTCTCTCGCCCAGCCCCCGCCGCCTCCTgtcaacccccgcaaactctctGTGCCCGCCAGTAAGAGCGCGTCGTTCTCCCTGGGCCTGCCCCAGCCGCCCTCCCCGAAGCCCAGGAGCAAGTTCAAGAGGTCGCACAAGGAGAAGGCCCGAGCCCCGCAGCCCGCAGGCCCGAGCAAAGTCAGCCAGTCCTCACCGCTCCAGCACTCCTTCCTCACGGACGTATCGGATGTGCGCGAGATGGAGGGGGGGCTCCTGAACCTGCTCAACGACTTCCACTCCGGCAAACTGCAGGCTTTTGGGAAAGTGTGTTCCTTCGAGCAGCTGGAGCATGTGCGTGAGATGCAGGAGAAGCTGGCACGGCTGCACTTCAGCCTGGACAGCCACGTGGAGGAGCTGTCGGAGGACCAGAGGAAGTCCGCCTCCGACCACAACCTGGAGCACCTGCTCTGCAATctgGAAGAGCTCAGCAACTCAATACAGAAGCTCCACTTAGCAGAGAACCAAGACGTCCCCAAGACATCTGCTTCCTGAAGAAATGGGCTGTGATGAAGAAAAGAACGGCTGAAAATGGAGAAGAGAAGGGCCCGGAGGGAAACGGACTTGCAGCTATCAAGATTATATTTCAATAGCATGAGAATCTGCCAATGCTAGGCAATGTATGCAACGACCTGTAACACAAAAGCTATTGACAAAGCACAGATACTCTCTTATCAGGCCGTTCTTAGTAGATATTTTTGCAAACCATTTGTATACTAGATGGTTTCAAAATAATGACCTCACCAAGTTAATTATGAATACTCGTTTCACCTATTTTGCATCAGTTGCCGACACAATTGTCAAAGCATCATTCCAGGGAAAAATTTGATGGTCGTGTTAGTAGAAAAAGGGAGCAGAAAGAGACAGGGAACTGGTTGTTCTCTGGACAGTTAAAGCTTAAAGACCAGCTGTTGGTCACATTCTCGATCCATCCAGTATCTCATTGCTGCAAGCTGTGATGAAGCACATAGCTGATGCCTTATTCTAAAAGAAGCCTTTGGGTTAAAGTGAAATCCAGGCTCACTCTACCTTGACCGCAAAGCATTTTTACAGAGGTACAATTCAAGGCTCTATTTGGTAATTTATAGAGtcattatatatactatataggGCCCAGTGTAGATGTAAGATAGACTTTACACTTTTAGTAGAGCTCTTCTCAGGAATGCTTTGTAAACATCTATTTGTCTACTATATTCAGGATACTTGTTTGAAAGATCCTATTGTGCATGACTGACTGCACATGGTTTGGAGATTATCTGTTCAAATCCTTGACATGATGTTTACACATTAAGGGAGACGTTGTGGTTTTGTTGTAGGCGGGGCAGTATAATGTGTGTTCTTTTGTGGGTTAAAACTTTAAAGCAGATACTTAGGACTTTGAAATATGAGTAGATGCTCCGTGAAGGTGGAATGCGCATGGTATGTGTAGAGTACAGacagtttgttattttaaatggagcGTGAACGTGACAGAATAGTGACTTGCGTTCAGTGGGAGTAATGTGGATAATTGGATATACTGTGAAACACTTCAGTAGGTGCTTTAAAAGATTCATATTATTTGACCACTGTAGCTGTTATCatcctttaaacaaacaaacgtctGACTTCTCGCCAATAATgtagcacattttatttttaaattgggtGTGCTATTAGCTTTCCATGAAACTGAACAAACTGAGACTGatggaagaaaatgcatttgtggCCAATGGgcatcatttcattttctgcagggcataaaatattaatttgcccTTGCTATTTTTAAGCctattaaaaaacactttaaatatctATTATGCAATAGGCCTTTGTGCTGTTAAACCAGTtaagcacaaaaaaaatgtatttttcttcttatgaGAGAAAATGCACAGTAACAATATGGATATCAAGAGCCTTctgattgtgtttaaaaaaaattgaatgttcCTGGTGAAAATGATATGAACAGTCAGTGCTCAAGTCAGACATCTTGCATCATCCTTAaactaatatgtatttaaagggATTCATATTAAGTATTGTCTGTCCTTTTATTTACACGTGGAGATTTGAAATGGTATTTTGCTTCTTCTTCATAGCTGCCATTGTATCCTGGTCAaagtatttactgtatttgacTGATTATTATGTTATACGTTTGTTACttgtactgtaatattttaCTAGAAAACATGCAGAAGACTTTAAAAAAGTCGACATTTTTCACTGCACATCCCTCAGGCTGGAAGCTTGGCTGTTTAAAATCGAGAGTGTGCTGTAATTCTGTACCCTCTGAAGGAAAGACATTGTTGGCAGGCTTGAATTGCTGCCTGCTGTAAATTATTTAGTGTTACTAACCTTTAAATGGTGACAGTGTGATTTTGTGAAGTTTGAAGTTATACAAAACTGACTTCCCATTTTTTGGAAGTCGAAGTAAAAGTTAAACTGTGCAGAACTACCAGGACACAGCGTGGGCAGGGGAGAGTGacttttatgtctttatttttgttgttgttgtttgtatgtttgattgtttttcactaaaaactatttttgtagATTGACATTTTCACTACATCAGAAACCTTTGAAAAGTGTCCTGTTAATCTGTTACATATGTCATCTACAGGAAACAAGTACTTTCTATTGAGTACCGATATGTAGGGCTAGCTGTAATGCAGATTTAAATAGGATTAGAGCCATGGCACAAGCCTGTTTATACTAAGGCAGCTATGCTTTGAAATCTGGTCTTTATGTTCTAATATGTTTGCAGAATTTTCTGACAGATACTGGGAGATTAAGTACTGTATCTAAGACTTACTATTGTAACCCAAGCAAAAGACTTCCACATTAGACAGCAAAGAAGTCTAATATGTATCATAGTAttctaaaaaaaacagattcaattaggaaacaaataattttgGCTTCCAGCGTATTATGTGATGTTACTTATTCAGTAGTTGAGTCCTTCTATAATTGCGTTGCATAGATCTCAGTTTTGTTAgttagatttaattattttagtgtgAAGAAAATGACCCCAAAGAGGCTTTCCACAATTGTACTAATAGCTCCTAACCACTCATGTCACTCTGTAATTAACATTATAATGTTGTGTTTTCTAATTTAAAGggtttatattcattttaaatcaatttaacaaaaata

Function

symbol description
ccdc28b Acts upstream of or within cilium assembly. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome and Bardet-Biedl syndrome 1. Orthologous to human CCDC28B (coiled-coil domain containing 28B).

NR:

description
PREDICTED: coiled-coil domain-containing protein 28B-like

GO:      GO:0042384

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011024 True 3503 mRNA 0.41 6 8082418 8090075

Neighbor

gene id symbol gene type direction distance location
AMCG00011026 NA coding downstream 1443 8078378 ~ 8080975 (-)
AMCG00011028 NA coding downstream 4934 8070846 ~ 8077484 (-)
AMCG00011029 eif3i,LOC102790120 coding downstream 16661 8061443 ~ 8065757 (-)
AMCG00011021 LOC101067225 coding downstream 45162 8031177 ~ 8037256 (-)
AMCG00011023 lck,LOC100136288,LOC100136287 coding downstream 55930 7997538 ~ 8026488 (-)
AMCG00011025 LOC107562872,LOC107687085,LOC107576061 coding upstream 886 8090961 ~ 8099615 (-)
AMCG00011027 kpna6,LOC107584279,LOC107745716,LOC107562870 coding upstream 19248 8109323 ~ 8120492 (-)
AMCG00011030 tmem39b coding upstream 42954 8133029 ~ 8149161 (-)
AMCG00011031 NA coding upstream 238320 8328395 ~ 8328942 (-)
AMCG00011035 LOC106581236,LOC100380864 coding upstream 274645 8364720 ~ 8380701 (-)
G103859 NA non-coding downstream 25735 8056481 ~ 8056683 (-)
G103794 NA non-coding downstream 302477 7777008 ~ 7779941 (-)
G103666 NA non-coding downstream 849104 7230954 ~ 7233314 (-)
G103658 NA non-coding downstream 892835 7189085 ~ 7189583 (-)
G103645 NA non-coding downstream 910613 7115984 ~ 7171805 (-)
G103893 NA non-coding upstream 77620 8167695 ~ 8167924 (-)
G103900 NA non-coding upstream 251288 8341363 ~ 8341588 (-)
G103903 NA non-coding upstream 252509 8342584 ~ 8342818 (-)
G103929 NA non-coding upstream 370855 8460930 ~ 8462662 (-)
G103999 NA non-coding upstream 716395 8806470 ~ 8811022 (-)
G103832 NA other downstream 55387 7938137 ~ 8027031 (-)
AMCG00010988 NA other downstream 1437695 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 2108111 5965133 ~ 5974307 (-)
G103395 NA other downstream 2333854 5704770 ~ 5748564 (-)
AMCG00010946 NA other downstream 2756994 5284330 ~ 5325424 (-)
AMCG00011051 NA other upstream 729476 8819551 ~ 8864051 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 1132193 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 1511302 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 1651058 9741133 ~ 9743785 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 3869163 11959238 ~ 11971002 (-)

Expression


Co-expression Network