AMCG00011034


Basic Information

Item Value
gene id AMCG00011034
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8463214 ~ 8464498 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011034
ATGGACAACCACGAGGCACATCCCCCACTGGACTCCTGTACGGAGGGCGGCGCTCTGGAGGAGCTGGGGCAGTGTTTCCAGATGTGCATTGAGGAAGTGGGCCGCCTAGAGGCCAGGAGGGACAGCCTGGTGCAGGAGATGTGTGCGCTGCGCGAGCCCATGCTGGAGGCGACAAGGGCGCTGCGTGAGGAGCTGTCATCCGTGCTCAGGCAGAAGGCCCAGGCCGAGCTGCAGTGCCAGAGCCTGCAGGAGGACATCTGCCAAGTCAAGCGCAGCCTGTTCGCCACCACGCGGGCCTGCATCCAGTGCCAGTTCACCCTGGAGACCCAGCGGCATGACGTGGCCCAGTTCTCCATCTCCCGGGAGCTGCTGCAGTCCCAGCTGCTCCAGCTCTCTGAGGAGCTCTCCCAGCTCAGAGCCGCCCGGCAGGCCCGGCTGGACTCCCTGAACACGCAGGCGCACAACTCCCACCAAGCTCGGGCCGATGGCGACCTGTCGGACTGCCGTAGGGCCTCTCTGGACCTAGAGCGCTACCTGAAGGAGGGGATCAAGACCCTGGAGGATTTCTATGAGCCCCGAGTGCTGGGCCAGCTGAAGAGACGGCAGATGAGCGCTGAGGCCCTGAGGAGGACCAGGGAGCAGACGGCTGAAATGAAGGGGAGGCTCTGGCCCTTGCAGGAGGAGCTCCAGAGACTCACCCTGCAGAGGAGCTGCCTGGAGGAGAGGGCAGCCCTCATGCAGATAAAGAGGGATGAAGACGTGCGGCAGTACCGGgagacACTGGAAACACTAGAGGAGAGTGTCAGGGAACTGAAAATAGAGGTGAAGCTTCAGAAGAAAAGAAATGAGGAAATTGAATCACTGAAGAACAGCCTTTCAAAAGAACTAGATGTTTACAAGTaa

Function

GO: NA

KEGG:

id description
K10377 SYNC1; syncoilin 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011034 True 903 mRNA 0.61 2 8463214 8464498

Neighbor

gene id symbol gene type direction distance location
AMCG00011036 zbtb8os,LOC100304789 coding downstream 10973 8443315 ~ 8452241 (-)
AMCG00011035 LOC106581236,LOC100380864 coding downstream 82513 8364720 ~ 8380701 (-)
AMCG00011031 NA coding downstream 134272 8328395 ~ 8328942 (-)
AMCG00011030 tmem39b coding downstream 314053 8133029 ~ 8149161 (-)
AMCG00011027 kpna6,LOC107584279,LOC107745716,LOC107562870 coding downstream 342722 8109323 ~ 8120492 (-)
AMCG00011041 yars,LOC107687080,LOC107724337,LOC107691530 coding upstream 84335 8548833 ~ 8555531 (-)
AMCG00011040 NA coding upstream 114133 8578631 ~ 8582714 (-)
AMCG00011042 NA coding upstream 123095 8587593 ~ 8610252 (-)
AMCG00011046 LOC106589091,LOC103035846,LOC105892259,LOC103143294,LOC108257369,LOC105006285,LOC107691525 coding upstream 256886 8721384 ~ 8735583 (-)
AMCG00011049 ldlrap1,arhb,LOC106579967 coding upstream 401843 8866341 ~ 8886705 (-)
G103929 NA non-coding downstream 552 8460930 ~ 8462662 (-)
G103903 NA non-coding downstream 120396 8342584 ~ 8342818 (-)
G103900 NA non-coding downstream 121626 8341363 ~ 8341588 (-)
G103893 NA non-coding downstream 295290 8167695 ~ 8167924 (-)
G103859 NA non-coding downstream 406531 8056481 ~ 8056683 (-)
G103999 NA non-coding upstream 341972 8806470 ~ 8811022 (-)
G104054 NA non-coding upstream 500219 8964717 ~ 8965281 (-)
G104055 NA non-coding upstream 500874 8965372 ~ 8965579 (-)
G104098 NA non-coding upstream 773293 9237791 ~ 9265487 (-)
G104126 NA non-coding upstream 946091 9410589 ~ 9412922 (-)
G103832 NA other downstream 436183 7938137 ~ 8027031 (-)
AMCG00010988 NA other downstream 1818491 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 2488907 5965133 ~ 5974307 (-)
G103395 NA other downstream 2714650 5704770 ~ 5748564 (-)
AMCG00010946 NA other downstream 3137790 5284330 ~ 5325424 (-)
AMCG00011051 NA other upstream 355053 8819551 ~ 8864051 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 757770 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 1136879 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 1276635 9741133 ~ 9743785 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 3494740 11959238 ~ 11971002 (-)

Expression


Co-expression Network