AMCG00011042


Basic Information

Item Value
gene id AMCG00011042
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8587593 ~ 8610252 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011042
ATGGCCAGAGGACGAGGAGCTGAGCAGTACTCCGCCGCCAATCTGCTACAAAGCAAACCTGGAAGTCACAGCGGGACTTTGCAGAAGTTATCAAAGCAAGAACGAGAGAACAAGCTGTCTGTTTGCAATAAGATCTGCTATGCAATTGGAGGTGCCCCCTACCAGATCACAGGATGTGCCCTTGGCTTCTTCCTCCAGATCTACCTTTTGGATGTGGCACAGctgGACCCTTTCTATGCCTCCATCATCCTGTTCGTGGGTCGGGCCTGGGATGCCGTCACAGATCCCACCGTGGGCTTCCTCGTCAGTCGGAGCCGCTGGACGCGATTCGGACGGATGATGCCCTGGATCCTACTTTCCACCCCGTTTGCAGTGGCATCCTACACGCTCATTTGGTACGTCCCCTCATTTGAGCAAGGCAAGGTGGCGTGGTACCTCATCTTCTACTGCTTCTTCCAGACACTGCAGACGTGTTTCCACGTGCCTTATTCGGCGCTGACGATGTTCATCAGCTCTGATCAAAAAGATCGCGACTCTGCAACTGCCTACAGAATGACAGTTGAGGTCCTAGGCACAGTAGTGGGTACAGCCATCCAGGGACAGATTGTGGGAGCGTCTAATGCCCCCTGTATCCGGGGTGAACTGGATGAGCCTATGTCCAACCTCTCTACTGTGGCTGATGTCAACGTCACACATGTGACTCTCGAGGAAACCAGAACTGCTTACATTATTGCATCTGGTGTGATCGGTGCTATTTACGTCCTGTGTGCGATCATCCTGTTCTTTGGTGTGAGGGAAAGGAAAGacacagggagacagaggtCGGAGAAGCCCATGTCTTTCTTTGAAGGTCTGCGGCTGGTGATGGGCCACGGGCCTTATACCAAACTGGTGATGGGCTTCCTCTTCACCTCGCTCGCCTTCATGCTCTTGGAAGGCAACTTTGCTCTCTTCTGCTCTTACACCCTGGGCTTCAGGAACGACTTCCAGAACATCCTGCTGGCAATCATGctcTCTGCTACTCTAGCCATCCCTTTCTGGCAATGGTTCCTGACCAAATTTGGGAAGAAGACCGCAGTGTATGTTGGAATTTCGTGGGTGGTTCCTTTCATGATCCTCATTGTGTGCCTCAAGAGTAACCTGATCATGGCCTATGTGGTGTCTGTGGCCGCGGGCATCAGTGTGGCCGCTGCATTCCTCCTGCCCTGGTCCATGCTCCCAGACGTGGTGGATGACTTCAAGTTGAAGAACCCCGACTCCAGAGGCTATGAAGCAATCTTCTACTCCTTCTATGTTTTCTTTACCAAGTTTGCCTCTGGTGTGTCCCTGGGAATCTCCACCCTGAGCCTTGACTTCGCAGGTTACCAGACGAGAGGCTGCACGCAACCGGAGGCTGTGAATTTAACCCTAAAGATGCTGGTGTCCCCAGCTCCCATAGCTCTCATCATCCTCGGCCTCATCATCTTCAAGCTGTACCCAATTGATGAAGAGACACGCCAGGGCAACCGCAAACTTCTGCAGGAGCTCCGAGATAATGACCAGGACTCGGAGATGGAGTCTAATGAGATTGGCAGTGTGGTGTAG

Function

GO: NA

KEGG:

id description
K23894 MFSD2A; sodium-dependent lysophosphatidylcholine symporter 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011042 True 1584 mRNA 0.53 14 8587593 8610252

Neighbor

gene id symbol gene type direction distance location
AMCG00011040 NA coding downstream 4879 8578631 ~ 8582714 (-)
AMCG00011041 yars,LOC107687080,LOC107724337,LOC107691530 coding downstream 32062 8548833 ~ 8555531 (-)
AMCG00011034 NA coding downstream 123095 8463214 ~ 8464498 (-)
AMCG00011036 zbtb8os,LOC100304789 coding downstream 135352 8443315 ~ 8452241 (-)
AMCG00011035 LOC106581236,LOC100380864 coding downstream 206892 8364720 ~ 8380701 (-)
AMCG00011046 LOC106589091,LOC103035846,LOC105892259,LOC103143294,LOC108257369,LOC105006285,LOC107691525 coding upstream 111132 8721384 ~ 8735583 (-)
AMCG00011049 ldlrap1,arhb,LOC106579967 coding upstream 256089 8866341 ~ 8886705 (-)
AMCG00011050 tmem57,tmem57a,LOC106610893,LOC107584286,LOC107687072 coding upstream 303189 8913441 ~ 8930598 (-)
AMCG00011052 NA coding upstream 330864 8941116 ~ 8952749 (-)
AMCG00011054 NA coding upstream 355565 8965817 ~ 8970772 (-)
G103929 NA non-coding downstream 124931 8460930 ~ 8462662 (-)
G103903 NA non-coding downstream 244775 8342584 ~ 8342818 (-)
G103900 NA non-coding downstream 246005 8341363 ~ 8341588 (-)
G103893 NA non-coding downstream 419669 8167695 ~ 8167924 (-)
G103859 NA non-coding downstream 530910 8056481 ~ 8056683 (-)
G103999 NA non-coding upstream 196218 8806470 ~ 8811022 (-)
G104054 NA non-coding upstream 354465 8964717 ~ 8965281 (-)
G104055 NA non-coding upstream 355120 8965372 ~ 8965579 (-)
G104098 NA non-coding upstream 627539 9237791 ~ 9265487 (-)
G104126 NA non-coding upstream 800337 9410589 ~ 9412922 (-)
G103832 NA other downstream 560562 7938137 ~ 8027031 (-)
AMCG00010988 NA other downstream 1942870 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 2613286 5965133 ~ 5974307 (-)
G103395 NA other downstream 2839029 5704770 ~ 5748564 (-)
AMCG00010946 NA other downstream 3262169 5284330 ~ 5325424 (-)
AMCG00011051 NA other upstream 209299 8819551 ~ 8864051 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 612016 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 991125 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 1130881 9741133 ~ 9743785 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 3348986 11959238 ~ 11971002 (-)

Expression


Co-expression Network