AMCG00011050 (tmem57,tmem57a,LOC106610893,LOC107584286,LOC107687072)


Basic Information

Item Value
gene id AMCG00011050
gene name tmem57,tmem57a,LOC106610893,LOC107584286,LOC107687072
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8913441 ~ 8930598 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011050
AAGAAAAGAGGAGGGTCTAGAGGAGagtccttttatttatttctttgtttccactggaaaaaaataataacagcgATCCatttttatcattgtttttatttatttttttgtccgcgtaaaaaaaaaaaactggaagagATTGCTGGGGGGTTTAGAAAGCCGAAGCGAAGGGGAGGAGGATGAAGCGGCGCAATGCGGACTGCAGCAAACTCCGGCGGCCGTTAAAACGGAACCGAATCACCGAGGGTATATACGGCAGCACATTCTTGTACCTCAAGTTCCTGGTTGTCTGGGCACTGGTTTTGTTGGCAGATTTTGTCCTGGAGTTCAGATTTGAGTATTTGTGGCCATTCTGGCTCTTCATCAGGAGCGTATATGATTCCTTCAGATACCAGGGTCTGgcattttcagtgttttttgtttgtgtagcaTTTACATCAGATATTATATGCCTGCTCTTCATACCTGTACAATGGTTGTTCTTTGCAGCCAGTACATATGTATGGGTACAGTACGTTTGGCATACAGAAAGAGGAGTCTGTCTACCTACAGTATCCTTATGGATATTGTTCGTATATATAGAAGCAGCAATCAGATTCAAAGATCTGAAAAATTTCCACGTGGACTTGTGTCGGCCGTTTGCAGCACACTGCATTGGATATCCTGTTGTGACACTGGGTTTCGGTTTCAAAAGTTATGTCAGCTACAAGATGCggttaagaaaacaaaaggaagtcCAGAAGGAGAATGAATTCTATATGCAGCTCCTCCAGCAGGCATTGCCTCCCGAACAGCAGATGCTACAGAGACAAGAAAGGGAAGTGGAGGAAGCTGCAGCAGCCAAAGGGATTTCAGAAGTGGATGCCACACCAATGTCACAACACAATGGCGTCACGGCCACTAAAAAAATAGCTACAACGTTACCAGAACTCGAATACagagaaaaagggaaagagaaGGACAAAGACCCCAAGAAACACAACCTTGgaataaataacaacattttGCAGTCTGTAGACTCTAAAATACAAGAAATTGAATACATGGAAAACCATATCAACAATAAGAGATTGAACAACGATCTCGTGGGAAGTACAGAAAACCTCTTGAAGGAGGAGACGAGCACCACGTCTTCGAAAAATTACAAGAACGCCAGCGGGGCCATCAACTCCTCGCCCCGCAGTCACAGTGCGTCCAACGGGAGCATCCCCTCGTCCTCGACCAGTAAGAACGAGAAGAAGCAGAAGTGCACTAGCAAGAGTCCTAGTGCCCACAAGGATTTAATGGAAAACTGTATACCCAACAACCAGCTCAGCAAGCCTGACACACTAGTACGGCTGGAGCAGGACATTAAAAAGCTGAAGGCAGACCTGCAGGCCAGCAGGCAGGTGGAGCAGGAGCTGCGCAGCCAGATCAGCTCTCTCAGCACCACCGAGCGAAGCATCCGCTCCGAGCTGGGCCAGCTGCGCCAGGAGAACGAGCTCCTGCAGAACAAGTTGCACAATGCGGTGCAAGCGAAACAGAAGGACAAGCAGACGATCAGCCAGTTAGAGAAGAGGCTCAAAGTCGAGCAGGAAGCACGGGCTATTGCTGAGAAACAGCTTGCagaggagaagaagaggaagaaactGGAGGAGGCCACGGCGGCCCGAGCGGTGGCCCTGGCTGCAGCTTCAAGAGGCGAGTGCACAGACACCCTGAGGAGTCGAATCAGGGAGCTGGAGACCGAGTGTAAAAAATTAACTCTTGACATGAAGGTCAAAGAAGAGCAGATCCGAGAGTTAGAAATGAAAGTGCAGGAACTACGTAAATataaggaaaatgaaaaagacactGAAGTATTGATGTCAGCGCTTTCAGCCATGCAGGATAAAACACAACACCTCGAGAACAGCCTGAGCGCAGAGACACGGATCAAACTGGACCTGTTCTCTGCCCTGGGGGATGCCAAACGACAGCTGGAGATTGCACAAGgtcAGATACTCCAGAAAGACCAGGAGATCAAGGACCTGAAACAAAAGATCGCAGAGGTGATGGCAGTCATGCCCAGCATCACGTACACTGCAGACACCAACAACATGAACCCTGTGGCCCCGCATTACTCCTCCAAGTTCATGGATTCAAGCCCCTCCGGCCTGGATCCAAACGCCTCCGTTTACCAGCccctgaaaaagtgaatgcccacttttcttttcttttttttactttttcttttgccCAGTTGAAGAATTACTCAATGTGTTCACGTTGAGCGAGAggtttttggtttagttttatttttgtttgtttatttttctcccccctgGTCAAGAAGACATTGTATTGTGTGACTGTATTTGTTGTAgttaaaacaaaagacaaaaaaaagggaCATCACGTGTCGACTAGGACTTGCCCAACGGTTTGTTTCTTGTAAATGTTTAGAAAACCTCACAGAACTTGGCGTATATCTTTCTTGGTCAGTGCATaactgctttatatatatatatatatat

Function

NR:

description
PREDICTED: macoilin

GO:

id name namespace
GO:0030424 axon cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011050 True 2495 mRNA 0.46 11 8913441 8930598

Neighbor

gene id symbol gene type direction distance location
AMCG00011049 ldlrap1,arhb,LOC106579967 coding downstream 26736 8866341 ~ 8886705 (-)
AMCG00011046 LOC106589091,LOC103035846,LOC105892259,LOC103143294,LOC108257369,LOC105006285,LOC107691525 coding downstream 177858 8721384 ~ 8735583 (-)
AMCG00011042 NA coding downstream 303189 8587593 ~ 8610252 (-)
AMCG00011040 NA coding downstream 330727 8578631 ~ 8582714 (-)
AMCG00011041 yars,LOC107687080,LOC107724337,LOC107691530 coding downstream 357910 8548833 ~ 8555531 (-)
AMCG00011052 NA coding upstream 10518 8941116 ~ 8952749 (-)
AMCG00011054 NA coding upstream 35219 8965817 ~ 8970772 (-)
AMCG00011057 clic4 coding upstream 257112 9187710 ~ 9200667 (-)
AMCG00011059 NA coding upstream 308763 9239361 ~ 9249868 (-)
AMCG00011060 rcan3,LOC104955544 coding upstream 323535 9254133 ~ 9260814 (-)
G103999 NA non-coding downstream 102419 8806470 ~ 8811022 (-)
G103929 NA non-coding downstream 450779 8460930 ~ 8462662 (-)
G103903 NA non-coding downstream 570623 8342584 ~ 8342818 (-)
G103900 NA non-coding downstream 571853 8341363 ~ 8341588 (-)
G103893 NA non-coding downstream 745517 8167695 ~ 8167924 (-)
G104054 NA non-coding upstream 34119 8964717 ~ 8965281 (-)
G104055 NA non-coding upstream 34774 8965372 ~ 8965579 (-)
G104098 NA non-coding upstream 307193 9237791 ~ 9265487 (-)
G104126 NA non-coding upstream 479991 9410589 ~ 9412922 (-)
G104272 NA non-coding upstream 1792992 10723590 ~ 10723956 (-)
AMCG00011051 NA other downstream 49390 8819551 ~ 8864051 (-)
G103832 NA other downstream 886410 7938137 ~ 8027031 (-)
AMCG00010988 NA other downstream 2268718 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 2939134 5965133 ~ 5974307 (-)
G103395 NA other downstream 3164877 5704770 ~ 5748564 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 291670 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 670779 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 810535 9741133 ~ 9743785 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 3028640 11959238 ~ 11971002 (-)
AMCG00011140 NA other upstream 3060231 11990829 ~ 11997786 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000228_00070213_00077569 TMEM57A coding CI01000228 null 69308 ~ 77569 (+)