AMCG00011054


Basic Information

Item Value
gene id AMCG00011054
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8965817 ~ 8970772 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011054
CAGGCACTTCCGGCAAGATGGCGTCCAACGCGGAGGCAGTTCCAGACACCAGTGATGAATCGTCAGAAAACAGTTCGGCTGCCCAGAAAAGAGAGGACAGACTCAGGAAGTTCCGAGAGCTTCACTTTAAAAGGaACGAAGCTCGCAAACTCAACCACCAAGAAGTAGTAGAAGAAGACAAAAGACTTAAACTTCCAGCAAACTGGGAGGCTAAGAAAGCCAGACTGGAGTGGGAGCTGAAGGAGAATGCCAGGAAAAAGGAATGTGCTGAAAATGGAGAAGACTATGACCGGGTGAAGCTGCTGGAGATCAGTGCTGAAGATGCCGAAAggtgggaaagaaaaaagaaaaagaagaatccTGATCCAGGCTTTTCAGGTTATGCTGAAGCACAGTTACGTCAGTATCAAAGACTCTCCAGGCAAATTAAGCCTGACATGGAGACCTATGAAAAACAACGTGAAGAGTGGATTGAGAAAAGAGCAAAATACAGCAGACGCAGGGCCTACAACGATGACTCGGACATCGACTACATCAATGAGAGGAATGCCAAGTTCAACAAGAAGGCAGAGAGATTCTACGGCAAATACACCGCTGAGATCAAGCAGAACTTGGAGAGAGGCACTGCGGTTTAATTTAGCCTCTATGAAATTGAATAAATCACAGGCAAAATAAACGTGTAAGGATTTAAGGACATTTCTATTATTGGGTTTAATACTATCTCAATCCAAGGCTGAAGGGACATTTCATGCTACTGATGTCCTCTATCCTTGTGTGTGGTTGTTAAACAGTTTATTCTAGTTATTTGTTTCATGAAAGtgaaaaatggaaacatctCAGACGCATCAAGTGGGAACATTTGTGAAACATGTACCGATTAtaatttgtgtacattttattttaactagtatgctattttgtgtattttaagttCAAGTCCTTTGCAGGaagacttttatattttataaaaagccAACACATCTTCAACACTCATCCTATGCTATTTCGAATTTCCTTGCATTTAAAGATTAATAAaactttctaaatatataa

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K12868 SYF2; pre-mRNA-splicing factor SYF2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011054 True 1053 mRNA 0.40 6 8965817 8970772

Neighbor

gene id symbol gene type direction distance location
AMCG00011052 NA coding downstream 13068 8941116 ~ 8952749 (-)
AMCG00011050 tmem57,tmem57a,LOC106610893,LOC107584286,LOC107687072 coding downstream 35219 8913441 ~ 8930598 (-)
AMCG00011049 ldlrap1,arhb,LOC106579967 coding downstream 79112 8866341 ~ 8886705 (-)
AMCG00011046 LOC106589091,LOC103035846,LOC105892259,LOC103143294,LOC108257369,LOC105006285,LOC107691525 coding downstream 230234 8721384 ~ 8735583 (-)
AMCG00011042 NA coding downstream 355565 8587593 ~ 8610252 (-)
AMCG00011057 clic4 coding upstream 216938 9187710 ~ 9200667 (-)
AMCG00011059 NA coding upstream 268589 9239361 ~ 9249868 (-)
AMCG00011060 rcan3,LOC104955544 coding upstream 283361 9254133 ~ 9260814 (-)
AMCG00011061 NA coding upstream 329225 9299997 ~ 9309271 (-)
AMCG00011073 NA coding upstream 444310 9415082 ~ 9423743 (-)
G104055 NA non-coding downstream 238 8965372 ~ 8965579 (-)
G104054 NA non-coding downstream 536 8964717 ~ 8965281 (-)
G103999 NA non-coding downstream 154795 8806470 ~ 8811022 (-)
G103929 NA non-coding downstream 503155 8460930 ~ 8462662 (-)
G103903 NA non-coding downstream 622999 8342584 ~ 8342818 (-)
G104098 NA non-coding upstream 267019 9237791 ~ 9265487 (-)
G104126 NA non-coding upstream 439817 9410589 ~ 9412922 (-)
G104272 NA non-coding upstream 1752818 10723590 ~ 10723956 (-)
G104278 NA non-coding upstream 1975229 10946001 ~ 10946274 (-)
G104315 NA non-coding upstream 2445418 11416190 ~ 11420103 (-)
AMCG00011051 NA other downstream 101766 8819551 ~ 8864051 (-)
G103832 NA other downstream 938786 7938137 ~ 8027031 (-)
AMCG00010988 NA other downstream 2321094 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 2991510 5965133 ~ 5974307 (-)
G103395 NA other downstream 3217253 5704770 ~ 5748564 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 251496 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 630605 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 770361 9741133 ~ 9743785 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 2988466 11959238 ~ 11971002 (-)
AMCG00011140 NA other upstream 3020057 11990829 ~ 11997786 (-)

Expression


Co-expression Network