AMCG00011086


Basic Information

Item Value
gene id AMCG00011086
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9741133 ~ 9743785 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011086
ATGTGGCCTATAGTGTGGACAGCCATGCGGACCTATGCGCCGTACATCACCTTCCCGGTAGCTTTGGTGGTGGGAGCCGTGGGGTACAACCTGGAATGGTTAATCCGGGGCACGCCGCCCCCAGCGCCGGAGGAGAAGGGTATCCTGGAGCAGCGAGAGGACCGAAAGTTGGAGGAGCTGAGTGGCCGAGACCTCACTCAGGTCACCAGCCTCAAGGAGCGCCTGGAATTCACCCCCAGAGCGGTGCTGAACCGCAACCGGCCCGAGAAGAGCTAG
>TU130270
CGAGACTTCTCGAAGCGTATTAGCCATGTTGGATGTTTAGTGTGACTCTCACATAAAACTACATTGTCCGCCTGTAAGGGCACAGAGTCCTTCTGAGCCATGTGGCCTATAGTGTGGACAGCCATGCGGACCTATGCGCCGTACATCACCTTCCCGGTAGCTTTGGTGGTGGGAGCCGTGGGGTACAACCTGGAATGGTTAATCCGGGGCACGCCGCCCCCAGCGCCGGAGGAGAAGGGTATCCTGGAGCAGCGAGAGGACCGAAAGTTGGAGGAGCTGAGTGGCCGAGACCTCACTCAGGTCACCAGCCTCAAGGAGCGCCTGGAATTCACCCCCAGAGCGGTGCTGAACCGCAACCGGCCCGAGAAGAGCTAGACACTgaaactggactggactctgcCTCTAGACTATGTTGCAGGCAAGCGGTGTGTTAGTCCCCATCGCAGCACAGATACAATCACCTGCACAGCGTCCAGGAAAAGACCACCTGTTGCGTCTTGGTGGGGACTTCATATATGACTACTGTGAATAAAATTGTTGGTTGCAATTAGGAAGGAAGTGTGAGCTTTATCTGAAATATGAACATGAACAAATGTTCGCAGTTCACCTAACCTGCATCATCGGcacatccttttatttttttgtatgcttCTTTTGCTTAGTTATGACCTTTAGACCCCCAAGCTGGTGTCTGAATATACAGTAGGTTTTTATAAGATCAGTAGGACAAGTTCCTTCAGTCTAGGGGATAAAATCATGGTCCACTTCAGGCACTGATAGAACTGTACttctatttaaaaaagagacggcattatttacttttgtggGGGGAGGGCGAGATTGTTGTCGCATGGATTTTTCTAATGATCAAACTGTATCCACAATAAAAATGGCTTTTTGGGGAGTTTCTTCTTAATCTAAGACACAAAGCCTGTTATTGCATAGGAAAAGCAACTGGACTGCAAGAAGTGTGATGGACCCCAAGTCATTTCCAAGAATCAGACCAATTTCCAAGTTGCAGTTGgaattttttaaagaattttgaaagaagggaagggaaggtttAAAACAATTGCAAGAACCCATTGTTGACTGCACCCTTCCTGGCTGATGGAGGCAATGGGCAGAGCTTCTTTACAGAGCAATTTAAACTTGCTGTGTATTATACCAGAGCACAATTAATATCTGCACATTATGTAAGCTGTCTCATTAGTACTTTACCctatgatttatattttgtcttttatcACTTAGTTGTGTGACTTAATTACCTATCTTAAAAAAACAGATCTTTATGGGAAACGTGACATTCTCTTAATCCTCAAAAAGAGATTTTTggttttactttcattttagaAAGAATGTAGTACGACTTGAAGATGTTTCCAGGTAATTGAATTAGTGTTTGTTGCAGCACCTGGATTCTAGGTTACAGAAGCTTATAATTGAGAGAAACTCCAAAGATATtcggatgtgtgtgtgtgtggggagaaGTGTGAGgttgtatgttttaaaatgtgttgcaatTTTATGCAGAAGATCATCACatctgtgaaatgtaattaaataaattcagtttttcaaCCACCA

Function

GO:

id name namespace
GO:0044422 obsolete organelle part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011086 False 276 mRNA 0.62 1 9742348 9742623
TU130270 True 1590 TUCP 0.43 2 9741133 9743785

Neighbor

gene id symbol gene type direction distance location
AMCG00011077 heyl,LOC105919519,LOC108238519,LOC102235766 coding downstream 224837 9508584 ~ 9516296 (-)
AMCG00011078 NA coding downstream 242050 9489542 ~ 9499083 (-)
AMCG00011071 pabpc4,LOC107659242 coding downstream 252486 9474557 ~ 9488647 (-)
AMCG00011072 ppie coding downstream 268058 9468676 ~ 9473075 (-)
AMCG00011070 NA coding downstream 280838 9455891 ~ 9460295 (-)
AMCG00011083 NA coding upstream 1463 9745248 ~ 9749899 (-)
AMCG00011085 LOC103394203,LOC106611221,LOC107679991,LOC107081232,LOC101155527,LOC107101634,LOC103461506 coding upstream 8911 9752696 ~ 9753490 (-)
AMCG00011092 NA coding upstream 715777 10459562 ~ 10479148 (-)
AMCG00011103 NA coding upstream 1625915 11369700 ~ 11395747 (-)
AMCG00011104 NA coding upstream 1687921 11431706 ~ 11434381 (-)
G104126 NA non-coding downstream 328211 9410589 ~ 9412922 (-)
G104098 NA non-coding downstream 475646 9237791 ~ 9265487 (-)
G104055 NA non-coding downstream 775554 8965372 ~ 8965579 (-)
G104054 NA non-coding downstream 775852 8964717 ~ 8965281 (-)
G103999 NA non-coding downstream 930111 8806470 ~ 8811022 (-)
G104272 NA non-coding upstream 979805 10723590 ~ 10723956 (-)
G104278 NA non-coding upstream 1202216 10946001 ~ 10946274 (-)
G104315 NA non-coding upstream 1672405 11416190 ~ 11420103 (-)
G104319 NA non-coding upstream 1676964 11420749 ~ 11426225 (-)
G104341 NA non-coding upstream 1767438 11511223 ~ 11593619 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other downstream 121854 9601377 ~ 9619279 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other downstream 504905 9222268 ~ 9236228 (-)
AMCG00011051 NA other downstream 877082 8819551 ~ 8864051 (-)
G103832 NA other downstream 1714102 7938137 ~ 8027031 (-)
AMCG00010988 NA other downstream 3096410 6628570 ~ 6644723 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 2215453 11959238 ~ 11971002 (-)
AMCG00011140 NA other upstream 2247044 11990829 ~ 11997786 (-)
AMCG00011135 NA other upstream 2322710 12066495 ~ 12069079 (-)
G104629 LOC100194717,LOC107660902,LOC107754487,LOC107655673 other upstream 2582312 12326097 ~ 12328282 (-)
AMCG00011152 kcnip1 other upstream 2684208 12427993 ~ 12457327 (-)

Expression


Co-expression Network