AMCG00011103


Basic Information

Item Value
gene id AMCG00011103
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11369700 ~ 11395747 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011103
TCTCGGGTCAGTGTGGGAGCTCAGTGCTGGGGTCCATAAGCGTCCTGAGTTCTCAGGGGCTGGATGTTGGGCTGGgttcacattatttattagatttttgaTTTATTCGGTGAGACATTCCTGCTCCTCTGGAATACTGCAGTCCTGCTCTGAGGCCAGGTGTGGAGGTGCTGCTGGACGCTTTGTGAACCAGAAGCCCTTACCATGGCTGGAAAATTAGGAGCCCTCAAGATCTTCCTGCTCCTGCAGTTGGTCTGCCTGACACTGGCACAAGTTAGGGGTCCGCCAGGTGAACAGGGACCGGTCGGCCCTCCAGGCCCCTCAGGAACCCCCGGGTCCGATGGCATTGATggtgATAAAGGACCTCCCGGGCCTGCGGGTCCAGCGGGCTCGAAAGGGGAGCCAGGAGAGCCAGGCCCTGATGGTATCCCAGGAGAGGCCGGCATTGATGGTCTGACTGGAGCCAAAGGAGACAGAGGTCCTGTTGGAAACCCTGGACCCAAGGGCCAGCCTGGTCCTGTTGGGAAAGCCGGGCCCACTGGCCCTGGACTTCCGGGACTGCCTGGTCCTCCTGGTCCAATCGGCCTTCCTGGTGAAATCGGCCGACCGGGAATAAAGGGACCTCCGGGCAAGTTTATCGCCGAGGAGGGCAGTGCTGACTTCCAGTGTCCGACCAACTGCCCAGGTGGGCAGAAGGGGCCTCAGGGGCTGCAGGGGGTGAAGGGACACAAGGGCCGTCCAGGAGTTCTTGGGGAGACAGGCAGTCTTGGGAAGCtgggcacAAAGGGAGAAGTGGGAATCTCTGGTGAACAAGGAATCCCAGGCCCTCCAGGTAAGGAAGGACCACAGGGCCCCCCTGGTGATGCAGGAGAGAAGGGAGATGTGGGAGGGCGTGGAATTCGTGGGCTACAGGGCGGCATTGGTCTGAAAGGAGAGAATGGTCTACCGGGAATTGATGGAAAAGATGGTACCCCTGGCATTCCGGGCATGAAGGGAGGACCTGGACAGCCGGGGATGCCTGGGCCTCCAGGCAACCAGGGGACAGCAGGTTTACCTGGCAGCCCTGGCATCAAAGGTGGCCTGGGAGACAAGGGCATTTCTGGGCCAAGAGGTTTTCTTGGAGTGTCTGGGGCTGCTGGGCCTCAGGGAGAGCCAGGACCTCCTGGAGAGCCTGGGATGCAGGGAGTTCCTGGGCCCAAGGGGATAAAAGGCGAGCGCGGGCCAGTGGGAATCCCAGGACCACAGGGAATCCCTGGAGTGAAGGGAGACAAGGGATTCCAAGGAAAGGTCGGACCGAAGGGAGACTTTggagACCCCGGTGTAGAGGGTCTTgggggagagaaaggagagCAGGGACCATCTGGAGAGCCCGGACCTAAAGGCcagCAAGGTGTGCGTGGAGATCCAGGGAACAATGGCCCCACAGGAGACCCAGGGAAGCCAGGCGAGCAAGGCCCCCCAGGCCTGCCCGGCCCCAGGGGCCTCTACGGCGAGAGGGGTGTGCCTGGGATGCCTGGACGACAGGGCAATCCTAGGCTGGCGGCGGTGGCGGTGAGCGCAAAGAGGGCTGTTCTGGGCGGAGCTGGCGTCATGGGACCCCCCGGACCCCCCGGCCCTCCTGGCGCTCCCGGGCCCCAGGGACCTCATGGCCTCACAGGACCCAGAGGAATCCCTGGGATGCTGGGTGCCTCTGGGCAGATCGGAAACACCGGGCACAAAGgaaAGAAGGGTCCCAAGGGTGAACGAGGGGACCCAGGCCGTCCCCACCAGGGTCAGCCAGGTCCACCAGGTATTCCAGGCCCTCCTGGCGTGGACGGGTACGGCCGGGACGGGAAGCATGGCGAGCAGGGTCCCCAGGGCTCGCCGGGTGAGAACGGACACCCTGGCCGTGTCGGCCCACTGGGTCTCCCTGGGTTCTGCGAAGCAGCAGCGTGTCTGGCGGCCTCGGCGTACACCTCGGCTCGGCTCTCCGAAGCGGGCACCATCAAGGGGCCGTCCAAGTAAAGCGTAGATGAAGACGGCACCGGGGGGAGACAGACGCCCGAGAAGACAGAGGGAAACCGCCACGTCCCCCCAGTGTCAGCCCTACCCCACCGCTCCTCGCCACGACGGGAGCCAACGAGAGACACATGAAAAACACCAGTCAAAACCGTCTTGGACTGAGACAACTGAACTGAAGAGAGAGACTTGACTCCCAACTATTGGTGCTTTCTATTGTACCATggtcaatttaaatgcatttttgtccatttttgttttgttttgatttttttctgccttttttattttaagattataaataGAGACACTTCAGAGCCACCATCCCTACCCCACGTcattaaagtgtaaaaataattacagaaattaccaataaaataaagactatGATAGTATAAGGCAATATTCAAATACCTTTGTAAGATTCATTGTTAATTACCTCATGCGAGACTGTAAAATGCTTGTTTCCTTCCTCTTTGTTTCTCCTTAATGctgtctgtttgttgttttgtttaattaacttcaTTTAGAGATCAATTAACTTTTTTCTGCTTCGATAGAACAGCATTCCCTGATTGACAATCGCCCGATGATTCAGTGCTGTAAAtctttgtaaatgtgtgttaattttatatatataaaaagtgggttttcaatgcaaaaaataaataaaataattaacaatgatAATGAAGGAAAAACCCAATGTTAATGAACttaatcagcattttttttcttaatttcaatcAGGTTATCTAACTACTTTACTGCTACCAAGAAAACTAAAAGCTAAAAACCAAAAGGATTAAAAGCCACTGTCTAAACACAAGCATATGTGAAATATGTCAACTGAAATATCAGAgactgaactgaaactgaaaaggaaaaaaaatgattagttTCATTAACAgaagttatttattatgttctgCTATGTTTGTTCAACTGTAaagactttttagtttttttgattTTTCAGTGCAACCCGAATCAATAAAGAGGAACGTTTTGTAAAAGAGAAATTCTTCTGTATCGAATGGGAATGATGGTGAAGAACGCAGCTTTTTAAATTTTCCCCGTGAGTACATCACCTTCTTTGGCTCTAACCACCTTCTCTACTTCTTCTCTGCGTAATAAAATTATACTGTCCAAACGGTTGGCAATCGTCCACAATTATTTAATCCTGGCAGCACAGGGATGTgccaagaagaaaataaaatgccatcAGTGTCACATGATCAGTTATCCTggactgaaataaatatgtttccAGTAATCATGGACCTTTTTTGATTCACATGCTTAGACTTATGAGGTGGGGTTGTAGGTGGATATGGAAATAGTTTGCTAATGAACagttgagggaaa

Function

GO: NA

KEGG:

id description
K08131 COL9A; collagen type IX alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011103 True 3366 mRNA 0.52 27 11369700 11395747

Neighbor

gene id symbol gene type direction distance location
AMCG00011092 NA coding downstream 890552 10459562 ~ 10479148 (-)
AMCG00011085 LOC103394203,LOC106611221,LOC107679991,LOC107081232,LOC101155527,LOC107101634,LOC103461506 coding downstream 1616210 9752696 ~ 9753490 (-)
AMCG00011083 NA coding downstream 1619801 9745248 ~ 9749899 (-)
AMCG00011077 heyl,LOC105919519,LOC108238519,LOC102235766 coding downstream 1853404 9508584 ~ 9516296 (-)
AMCG00011078 NA coding downstream 1870617 9489542 ~ 9499083 (-)
AMCG00011104 NA coding upstream 35959 11431706 ~ 11434381 (-)
AMCG00011112 NA coding upstream 257255 11653002 ~ 11661299 (-)
AMCG00011114 NA coding upstream 269377 11665124 ~ 11694330 (-)
AMCG00011113 NA coding upstream 308342 11704089 ~ 11767942 (-)
AMCG00011119 NA coding upstream 405014 11800761 ~ 11805757 (-)
G104278 NA non-coding downstream 423426 10946001 ~ 10946274 (-)
G104272 NA non-coding downstream 645744 10723590 ~ 10723956 (-)
G104126 NA non-coding downstream 1956778 9410589 ~ 9412922 (-)
G104098 NA non-coding downstream 2104213 9237791 ~ 9265487 (-)
G104055 NA non-coding downstream 2404121 8965372 ~ 8965579 (-)
G104315 NA non-coding upstream 20443 11416190 ~ 11420103 (-)
G104319 NA non-coding upstream 25002 11420749 ~ 11426225 (-)
G104341 NA non-coding upstream 115476 11511223 ~ 11593619 (-)
G104342 NA non-coding upstream 191311 11587058 ~ 11594342 (-)
G104376 NA non-coding upstream 253258 11649005 ~ 11656833 (-)
AMCG00011086 NA other downstream 1625915 9741133 ~ 9743785 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other downstream 1750421 9601377 ~ 9619279 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other downstream 2133472 9222268 ~ 9236228 (-)
AMCG00011051 NA other downstream 2505649 8819551 ~ 8864051 (-)
G103832 NA other downstream 3342669 7938137 ~ 8027031 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 563491 11959238 ~ 11971002 (-)
AMCG00011140 NA other upstream 595082 11990829 ~ 11997786 (-)
AMCG00011135 NA other upstream 670748 12066495 ~ 12069079 (-)
G104629 LOC100194717,LOC107660902,LOC107754487,LOC107655673 other upstream 930350 12326097 ~ 12328282 (-)
AMCG00011152 kcnip1 other upstream 1032246 12427993 ~ 12457327 (-)

Expression


Co-expression Network