AMCG00011270


Basic Information

Item Value
gene id AMCG00011270
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16119868 ~ 16124691 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011270
CAATTTCACCATGAGAACCTGGTGAGCATGTTGGAGGTGATCCATTATAACAGGTGCACATGTATCATCTTTGAGTTTATCAACCACAACATCTTAGAGGACCTGTACCAATTTGGCCATGGGTTTGACATCAAGCGACTCAGGAAGTACCTCTTCCAGGTCCTGCGAACGGTTATCCATCATGACATCAAGCCAGAGAATTTGTTGGTGACCAGCTCCGGCACTGTGAAGCTGTGTGATTTCGTCTTTCCCCGATTGCTGGTGCCAACAACTGAGCCCAACAGGGGATATTACCGTGCCCCGGAGCTCtttgttggaaaaaaaatctatggcAAACCTGTGGATATCTGGGCCATTGGCTGCTTGATCATGGAGATGTCCACTGGTGATGCCTACTTGAAGGGGTCCTCTGACCTAGGTCAGTTGCACAAGATTGTGACTAAAATAGgGCCCTTGACACCTCATCAGAAGAATCTTTACAGCCAGAAACCCAGCTTTTGTGTCACGCATCTCCCCAAGCTGCAGCTCCCCAGAAAACCAAGGAAGAAATACTACAGGGTCACTCCCCTTCTTGCTGATATGCTGGATTCTGACACACAGGGTCAACAGAGTGAGATTACAGCAGAAAGCAAGAAACAGGGCAAACCAGTAAGAGACGCCCACATTCCTGCATTTCTAATGGTCAGCCAGAAGATGGGGCTAAAGCTTACAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011270 True 714 mRNA 0.48 6 16119868 16124691

Neighbor

gene id symbol gene type direction distance location
AMCG00011262 sar1b,LOC107603246,LOC107713617,LOC107668454,LOC107657201 coding upstream 86843 16031074 ~ 16033025 (+)
AMCG00011258 pitx1 coding upstream 166091 15948639 ~ 15953777 (+)
AMCG00011256 NA coding upstream 293299 15825613 ~ 15826569 (+)
AMCG00011254 NA coding upstream 320375 15755286 ~ 15799493 (+)
AMCG00011257 NA coding upstream 455827 15649737 ~ 15664041 (+)
AMCG00011269 ppp2ca,LOC107603261,LOC107692973,LOC107728270 coding downstream 8761 16133452 ~ 16141505 (+)
AMCG00011267 skp1,Skp1,SKP1 coding downstream 19148 16143839 ~ 16148914 (+)
AMCG00011276 vdac1,LOC107557296,LOC106603817,LOC106567523 coding downstream 108914 16233605 ~ 16240750 (+)
AMCG00011275 cunh5orf15,kct2,si:ch73-269m14.2,c18h5orf15,LOC107557298 coding downstream 118636 16243327 ~ 16247084 (+)
AMCG00011278 NA coding downstream 301323 16426014 ~ 16427017 (+)
G105438 NA non-coding upstream 52426 16067233 ~ 16067442 (+)
G105436 NA non-coding upstream 56119 16062914 ~ 16063749 (+)
G105434 NA non-coding upstream 63419 16056165 ~ 16056449 (+)
G105390 ddx46 non-coding upstream 122136 15996377 ~ 15997732 (+)
G105370 NA non-coding upstream 258178 15859758 ~ 15861690 (+)
G105448 NA non-coding downstream 8067 16132758 ~ 16132987 (+)
G105466 NA non-coding downstream 75358 16200049 ~ 16200299 (+)
G105538 NA non-coding downstream 599997 16724688 ~ 16725153 (+)
G105684 NA non-coding downstream 1185068 17309759 ~ 17312068 (+)
G105715 NA non-coding downstream 1253929 17378620 ~ 17378860 (+)
AMCG00011268 NA other upstream 9487 16105586 ~ 16110381 (+)
G105373 cssa04h5orf24,pcbd2,LOC105890513,LOC100699409 other upstream 135789 15963340 ~ 15984079 (+)
AMCG00011255 LOC106603967,LOC105011194,LOC108410970 other upstream 246379 15863032 ~ 15873489 (+)
AMCG00011252 NA other upstream 264084 15853764 ~ 15855784 (+)
AMCG00011253 NA other upstream 267479 15850646 ~ 15852389 (+)
AMCG00011293 plac8l1 other downstream 853801 16978492 ~ 16982241 (+)
G105778 LOC105024433,LOC107752029,LOC107743918,LOC106604409 other downstream 1659472 17784163 ~ 17788050 (+)
AMCG00011328 NA other downstream 2982582 19107273 ~ 19117369 (+)
G105916 NA other downstream 3097364 19222055 ~ 19222421 (+)
G106139 LOC108275110 other downstream 3970538 20095229 ~ 20162966 (+)

Expression


Co-expression Network