AMCG00011391 (smad5,LOC107664766,LOC107563595,LOC105912044)


Basic Information

Item Value
gene id AMCG00011391
gene name smad5,LOC107664766,LOC107563595,LOC105912044
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22542649 ~ 22554137 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011391
GTCGGTGGCAGTTTATTTGGGAAGATCTGAACTTGAAAGTGATGCCGTGAGGAAAAGAGACGTTGTTGTGGCGGTTATTATTAAGCGCAGCGCTGTAAGTTAGTGCCGGGCGGccggaggaggagaggagaggagaggagaggagaggagaggaggatcAGGCCAGCTTTGTTTCCTGCAGGATCGCCTTTTCGCCGGGATATATGTGCgtgttgtgttgctttttgtttgtagGAACTGGTTGGGCCGCGTTGGGAAGCACTTTCGTGTAGTCGTGCGTCTTTGTTTTTGCGCTTCAGCTGGTGCAGTTGCTACTTTGTTCAACTTCCCACGTCGCGCAAAAACTTGTTTGGCTTTTGAGAAACGACGGCGCCGGCCGATGCGAGGGTCGTGGTGTGGTGTTTGGGTTTGAAAGCCTCGCATTTGCTGTGCTTTGTGTATATACCTTGCCATTTCCACTCTGCTCTTTCTGATGCATTCAAaaaaaaccaaccaaaaaaaaaacccaagGCTTTACAACATTTAAAGACTGTCCAGTGTTTCAAACCTGACGTGCACGTTTGGAAATAATCCTGCTGGgtttgcattttcacattttccctTTGTGTGCACGGTGCTTGGAAATCGGAAATGTGTTCACCTCTGATTTCTGTTTTACCCActctttttctttattgaacGAAGAATAATGCTTCAATGTTGTGTCCATGGGCACTTTCTTCCAGTGTGAGTCACAATAGCTGGTTTTCCAATAACGGGTGTTCGTGTGCACATAAACCCCAGTGAATGCCTGTTTGTCCTCTGTTGAAATGTGGCAGATATTTGCTGTCTGCTATTGTTTTGCATCCCACCAGATTGTAGGGGAGCCCGGCTCTTCTCAGTCCAGAGAAAAACTTGGGTCTTCTCGCCGACACACTCATGAGGGTTAGAGAAACCAAGCCCAGGAGTTTGGTAGATGAGATCTGGAAGTGCTTTATTGTAGTATCTTGTACAATATCTCCAGAGTCACTGAAAGATGCATCTGATCCCAAATAAAAACCGGGTAAGCTTTGATTGAAGTCGAGCAGCAGCTATCTTGTCAACTAAGTGAAAAggcatgtctggaggaaacaaatgtattcaagaTTAACAGAATTACATTCATTAACAGGGTGTGTGGTTGTCTTGTGCATAACTAATTACCAGCACATACTGTGGATGCTGATTGGATGCCTTAAAAGTTAGACAGGGATCTAGGGTCAGTAAGCTACAGACAAACGTGGTTATGATTGTTCATAACCCATTTCCAAATACTGTACTTATCTAACTGTCATTTTAAGCCTAGATCTAGTCTTTTTACACTGAATTATACACGTCTTTGGTGGTCATTTTCACTTCCTGCAAGATATGCTTATCAGTTTACTTTATATGCATCTACTTTAAGGTATACATGTAGGATACCCACACCCACGATTTAAAACTGCTGTTTGTGACAATAAATTCTGCCAACAGGTAACACTTTACACATTTTCTAAGCACTTCAGCAAAGCAATAATGCACAAGAAGCTGATATTATCCTCCAGTGACTACTGTAGAGCACATTGCACTCAACTCGTGTGTGCTGCTGCCTTTCATAAGGAAAGCATTGTAACGAAAttagtaaataatacatactgtagtgtagtgcaaATGCAGTGAGCTAAGACCCTAGAGACTGATTTAGTGCGTTTCAGTTCCAGTCAGGCATGATTAAGCATTGTCTAAAATAAGGTCTCTGGGGTACACAGGCTGGAGGACTTGGGTGTTTTTGCCTGATCCTGTAAACGATTTGTAGCTTAAAACTCTTCCAATTTGTATCTTTGAGCCCAAGTGCACAATTAACACACCTTTTTTTAGTCTGAGTGGCATAGGGGGAATATATACCTATTTCTAATTCACAATTGTGGGACCATGAATAGACACAATGCAAATCCTTGTATTTCCACTATtgtaaaaagcattttcatGGTAAATGTTGGTATAATTAGATTGTGGCAAACACCCTTAATGGAAGAattctaataaaatatttgacctTTTGGTAGCTACGCTATTATGTTAAAATATCCCGAAAGACGTGTCTAAAAGCCCACAGCAATGGAAATCCATCTGAATATATGAAAATGCAATGGATGCCGTAACATACAGTTTACAAGAGATTGTGTTCCAAGACTTTTCGCCATTAGAGCTTATGtgcaaagaaaagcattttgtcTGCATGGGCCTTGGGAAATCAATACGGTATACAGCTAGAGTGTCCTTGTCTGACTTTGCAGAAAGCACATTCACGAGGGTGAGCTCACAGTCCTTCAATCACTGTGAGCTGAGAAGGATTGACTGTTTGCAGCCGTCTGCAGCGGGAAATGGAAGGAAGTCCTAAGAGTGAAATGCATTGCGTTATCGCTGTCGGGCTCAGGGAGCTGTGTCCCCAGTTTCCTGTAGTTAAGATTATCATTTTGCTGTCGTCGCTTGGAAAGCATTGAGGCCTCGCGAAACTCCTAACAAGCCGATTACACTGTTGGGCACTAGCAGCTGGAGATAAGCGAGGGCCTGTATTGTGGAGGTCTTCCTGACCTGCTAAGTTGCTAGGTCAGTAATGGACACCTTTTTCAGTACGCAATGTTTTGAGTCTCTCTCGGACTAGGTCGTGCTACTTTGCATCTTCATCCGGTTTGGGAattaaaaaagggggaaacaTCTTGGTGATGACGTGGAGTCGGCAttggttgttttgttcttttgtccactttttttacttttaatttagcAAACAAATTATGGAAATGGCGTAAACTGTAAGGCCTATGTCATATTTTCACCAGCTGTACATGGTAGCAGGCTTGTtgagctttttgttttcagctgaTGCGCTGACTCATACCTCCTTTCCAGTTTGTCACTGGGAACAAGCTGTAGCCTGCAACTACTTTAATGTGTATCGCAATCAAATCTGTAATATAATCAGCAGCTTAATCGTTATACTGATGCATCTGAtttccaattaaatatttaaggaGCTTGCAGTGTAATTCTGCAATAGAGTACATTGGAAGGGCAGCAGGTTAAGAGTGACTGCTTTAGACAGTTTGCCttttatctatttttctttgtactgAGTCAGATGGTACAAGATACATCTAACTTCGAAAGTAGCCCAAACTATTTAAAGTGCTTGTATTCttataaaataagaatgaaatatatttaattcgGTCTTAGATATGGAAACAACACCATGGTGTTACCCTTGTCCAAAATCCCTGATATTAACCACAGTTGCTGTACTTCCTGGGGagcaaaaaaaagtaaatttgcTGTCCTGCTATATTTAACCAGCAGCTTTGATGTGGAGATAAGGCAACTGTGATGAAACTCTATGCACAAAACATATCTGCTAGTGTGACCTTGTGCATAAGGCAGGACTTGATGGTCAGACACAAGCCTGGTATTTATATCTCTGCTTTGGAAAAAGAGGATGGTAAAAGTAgtcaattattatattatagagCTGCTCTGTACAATACACTGATGAAGGTGTAGGTGCCATGGATTGGCCCGCTAATCTATTTTTCTCCTAATTAGCTTGGGAAGTGTACAGGTTACTATCATCTAAACAAGAGTCAAATTTACCTTATAGCCTGTGTGTCCTGCTGAGTATTTCCAAAATTGTTTTGTCTGCTGTTGCTATAAATGCTGAACAACATGAGACCACCTAGACAATAGAttacatttccccccccccgccaaaacatttttttatcttttccaATGAAGTTTAGAACAAAGAAtctcaaggaaaataaattgaataacaGGAACGCATGTGGCCAGCCacctgcctcctctccatttTGCAGATGTTCATAGTTCTGAGGATCTCGCATGCATTGAGAGGGTGCAGCCCAGCCCtttgaatttcaaaaatgtatcgAGAAGGAAAGACAGTGATGTTTGGCAGCTGTGGATGGGGaaggagggtgggggtgggaggaaATGGATTTTAGTAGCCGACATCCTCTTTCTCAAGTTGTGTTCATGACTCCTCAACAGCTGCATTCTGGCCTGTAGGCTCCATGCCTGGGTTGGGTGTGCGTAGAGAGGGTTCTGTTTCTGCAATAGTCAGATCTTTCAGGATAGGTGTATAGACGTgaatcttgtatttttttaattccaagaAAGAATATACAGATTATATTTGATATCTCCAGTTCATTGTATGTAAATTTTACAttggttgtgtatatataaaatgtagtttGCTGTGAAGGTTAACATTCTGACTAGTTAATCTTTATGAAATCAGTCTTGTGCAGGAACCTTTTGCTCTTTTTGCAggtgtctctcttttttttagCAAAAAGCTGCTGGTGACTCAAACCCCCTTCATGGTTTTATGGAATAGGCAGCTTTCTGGATGACTGCAGCCCTCTCTGTTCCTTTGAATGGTTTCAGCAGCAATTGAAGACCCTATAGGTCCCTGCATTGTAGGTTTTAACCATTTCCCTTTGGACTGTGTAATGAAGAGACCTTGTAAGGCTGACTGCTGAAAAACAAGAGTTGAATGCGAGCCAGAGGGCATTTCCACCACTGAAGACGGCAactcctttattttatttttttatccaaaaCATTTACTGTTCCGGTTTTGATTGGGGAAATTAAAGTTGACTTCGAGCGGATCAGACAATTACCAAGAGTCCTCCTTGTAAGACCACCAGGAGGACCCTTCTCTCTACCCTCAGTGCTGCGAAGGTAGTCTCTGCCACGGACCCTTGGGCTGCGAGCTGTTTAGCCTGAGAAGCTGGAGTAACTCTCCAGGGATTGCTTCCCCTCCTTGACTGTATACTACCGGAGAGTCGTCACCCTCATAGCCACCATGACTTCAATGTCCAGCTTGTTCTCCTTCACCAGCCCGGCTGTGAAGCGGCTCCTGGGGTGGAAGCAGGGAGACGAGGAGGAGAAGTGGGCAGAGAAGGCTGTGGATGCCCTGGTGAAGaagctgaagaagaagaaaggggCCATGGAAGACCTGGAGAAGgcgctgagcagcccaggacaACCTTCCAAGTGTGTCACCATCCCTCGCTCCCTGGATGGCCGGCTCCAAGTGTCCCACCGGAAGGGCCTCCCCCATGTCATCTACTGCCGTGTGTGGCGCTGGCCGGACCTCCAGAGTCATCATGAGCTCAAGCCCCTCGAGGTGTGCGAGTATCCCTTTGGGTCCAAGCAGAAGGAAGTCTGCATCAACCCCTACCACTACAAACGAGTGGAGAGCCCAGTGCTTCCTCCGGTGTTGGTGCCCAGGCACAGCGAGTTCAACCCCCAGCACAGCCTACTGGTCCAGTTCCGCAACCTGAGCCACAACGAGCCGCACATGCCTCTCAATGCTACCTTTCCAGAGTCTTTCCAGCAGCACAGTGGGGGCAACTCCTTCCCCATCTCGCCCAACTCGCCCTACCCCCCATCTCCGGCCAGCAGCGGCACCTATCCCAACTCTCCTGCCAGCTCTGGGCCCTCCAGCCCCTTCCAGCTTCCAGCTGACACCCCCCCGCCTGCCTACATGCCTCCCGACGAGCAGATGGGACAGGACAGCTCTCAGTCAATGGACACTGGGAACAGCATGGTCCCTCAGAACATGCCCAGGGGAGTAGACGTGCAGCCCGTGGAGTATGAGGAGCCCCGTCACTGGTGCTCCATCGTGTACTACGAGCTGAACAACCGCGTGGGCGAGGCCTACCACGCCTCCTCCACCAGCGTGCTGGTTGACGGCTTCACCGACCCGTCCAACAACAAGAACCGCTTCTGCTTGGGGCTGCTGTCCAACGTCAACCGCAACTCCACCATCGAGAACACCCGGCGCCACATCGGCAAAGGAGTCCACCTCTACTATGTGGGAGGGGAGGTGTACGCTGAGTGCCTGAGCGACACCAGTATCTTCGTCCAGAGCAGAAACTGCAACTACCACCACGGCTTCCATCCCACCACAGTCTGCAAGATCCCCAGCGGCTGCAGCCTCAAGATCTTCAACAACCAGGAGTTTGCCCAGCTGCTGGCTCAGTCTGTCAACCATGGTTTCGAGGCTGTTTACGAGCTCACAAAGATGTGCACTATCCGCATGAGTTTCGTCAAGGGCTGGGGGGCGGAGTATCACCGGCAAGACGTCACCAGCACCCCCTGTTGGATAGAAGTTCACTTGCACGGCCCTCTCCAGTGGCTTGATAAAGTACTGACACAGATGGGCTCTCCTCTTAACCCTATCTCCTCCGTATCCtaatgagagggagaggagctAGGGAgtgtctttttaatatatttttttttttttccctcaacgTTTGATTACTAAAACATGGTCTTCGAGGCTGAACTGTTTACACTGCCTGCGAGAGGGACTTTATCCTCAGGCAGTCCGAAGTATAGAGTGACTCATTGGCTACAAGCAATTTTTGCAGTGGTAAACACTAGTGGTGGCACAGACCGGATGAACAACTACAAACCTGTCATCTTCTCAGAGTAAAACACTACTGGAGACATCTGGCCTAGAgcaacttttcctttttttttttttttttccccatcccCTTTTTCTTCTGGTTTCCTTCATAAACCTGTTTTAAGAAAGCTTGTAAAAGCGAGCAGTCTCTTTCAATAGATTTTTGTTCAGTAGTTGAAATGGACTGAAATGGTAGTTCTTGTTTCCCCCCCTTCCTCCTTAAgccattaaataatttgttttcatactttgtttcctttcctaATGTCTAAACTCATCTATTTACATTCAAGGCATAGTTGTAGTAATGTCTATGACATCCAGAACCCTCTACATTTTTTTGTCCCCCCAGCTCTCCCCCCCCTTTTACTTCAAGGCAGAATACTAAATAATGgcttccttttaaataaaagcagtctTAAACCTTAAACATGCAATGTGGATTTTCCATTTTTGAACTGACTGAGTTTACTTCAGACATGGTTAAATTAAACATCAGGAATGGAAGATGGATGTTTCTTgatttaccattttattttacaatgtggtTCACATCTAAAGCTCATGAAGTTTGCTGACATCAAGGCTGATTTTGTTGCTTCTCATTGCTGTAACTTTGTGAAAGTAAAGAATCAATTATAATTGACTTAAACTAGAGTAGCTCATTTTGCTAGCTTTTATacattgtcatttttatgtattagCGAGGTATGTTGGTCTGCAGAAACACAGAATACTTGTTTTAATAAGGTAAgtaacacaatgaaaagcaCTGATCTTTACTGTATAGCTTGCTCTTACAGTGTTAGGAACAGATAACATGAGTGAAGTTAATCAGTTAACAATGTGattaacagaaatacaaataggg
>TU133220
tttttatgtattagCGAGGTATGTTGGTCTGCAGAAACACAGAATACTTGTTTTAATAAGGTAAgtaacacaatgaaaagcaCTGATCTTTACTGTATAGCTTGCTCTTACAGTGTTAGGAACAGATAACATGAGTGAAGTTAATCAGTTAACAATGTGattaacagaaatacaaataggggaaagtattaaaattaaactgtttagAAGTTGAAATATTCAGTTGATTGTTACAAAATAAGGCATAGTGAGGTATCTCTATTTTCCCTTCTAGTGTCTTCTGCACAGCCCGAAGAATGTTCTTTTATAGAAGTGTACTTTTCCCTTTTAGAAACTGAGCAGTTTCCAATCGGGCATCACATATGCTGTcc

Function

symbol description
smad5 Enables transcription cis-regulatory region binding activity. Acts upstream of or within several processes, including determination of ventral identity; embryonic morphogenesis; and vasculature development. Predicted to be located in cytoplasm and nucleus. Predicted to be part of heteromeric SMAD protein complex. Is expressed in eye; margin; and posterior lateral line primordium. Orthologous to human SMAD5 (SMAD family member 5).

NR:

description
PREDICTED: mothers against decapentaplegic homolog 5-like

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0043049 otic placode formation biological_process
GO:0048264 determination of ventral identity biological_process
GO:0060022 hard palate development biological_process
GO:0060030 dorsal convergence biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K16790 SMAD5; mothers against decapentaplegic homolog 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011391 True 7382 mRNA 0.44 6 22542839 22554137
TU133220 False 371 lncRNA 0.34 1 22542649 22543019

Neighbor

gene id symbol gene type direction distance location
AMCG00011386 NA coding downstream 1328019 21161329 ~ 21214630 (-)
AMCG00011382 tbc1d9b,LOC108438817 coding downstream 1388847 21135426 ~ 21153802 (-)
AMCG00011383 mgat4b,LOC106604568,LOC107550986,LOC107745197,LOC107733437 coding downstream 1467873 21064143 ~ 21074776 (-)
AMCG00011385 mgat4b,LOC106604568 coding downstream 1494400 21032802 ~ 21048249 (-)
AMCG00011384 NA coding downstream 1520712 21011871 ~ 21021937 (-)
AMCG00011393 NA coding upstream 9962 22564099 ~ 22600783 (-)
AMCG00011400 NA coding upstream 140004 22694141 ~ 22694827 (-)
AMCG00011398 NA coding upstream 184541 22738678 ~ 22743075 (-)
AMCG00011401 NA coding upstream 226550 22780687 ~ 22790227 (-)
AMCG00011408 cplx2,LOC108417825,LOC107598352,LOC108269257,LOC107571714,LOC107664715,LOC107741109 coding upstream 385603 22939740 ~ 22949010 (-)
G106454 NA non-coding downstream 614282 21926853 ~ 21928367 (-)
G106453 LOC103471465,LOC102309231,LOC102203450,LOC107738605 non-coding downstream 667523 21874812 ~ 21875126 (-)
G106448 LOC106604502,LOC105008787 non-coding downstream 742723 21795625 ~ 21799926 (-)
G106340 NA non-coding downstream 1589794 20951760 ~ 20952855 (-)
G106300 NA non-coding downstream 1630511 20911919 ~ 20912138 (-)
G106509 NA non-coding upstream 96363 22650500 ~ 22653658 (-)
G106527 NA non-coding upstream 142450 22696587 ~ 22696846 (-)
G106547 NA non-coding upstream 205397 22759534 ~ 22761316 (-)
G106587 NA non-coding upstream 308471 22862608 ~ 22862952 (-)
G106601 NA non-coding upstream 540154 23094291 ~ 23097328 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other downstream 2674747 19865614 ~ 19867902 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other downstream 3129634 19410368 ~ 19413015 (-)
G105890 NA other downstream 3437380 19102293 ~ 19105269 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 4351454 18180646 ~ 18191195 (-)
G105793 NA other downstream 4542204 17999668 ~ 18000445 (-)
AMCG00011399 NA other upstream 189293 22743430 ~ 22753616 (-)
AMCG00011409 NA other upstream 499176 23053313 ~ 23060966 (-)
AMCG00011414 NA other upstream 838967 23393104 ~ 23489642 (-)
AMCG00011428 NA other upstream 1259720 23813857 ~ 23817543 (-)
AMCG00011427 NA other upstream 1275160 23829297 ~ 23835074 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_16034357_16056363 SMAD5 coding CI01000000 null 16033898 ~ 16056594 (+)