AMCG00012088


Basic Information

Item Value
gene id AMCG00012088
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10629684 ~ 10684097 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012088
ATCCTTTCAACCTCAGAAATGGCCGAATCTGGGTTTGTCCTCTCCGAGAAACAGTTCCAGTGCTCGATATGCTTGGACACGCTGATCCAGCCGGTCACCACTCCCTGCGGCCACAGCTTCTGCCTAGAGTGTCTGGAAAACTACTGGCACCTCTGTGATGTCCACCAGTGCCCCTTGTGCAAGAAATTATTTCCCAAGAGACCCGAACTGGGAGTGAACAAGATCCTGCAAGAGATCACAGACCAGATGAAGAGCATGCAGGTGGCCAGTCAGGAAGAGCGAGCCATGAAGCCCGGGGAAGTGGCATGTGATTTCTGCACAGAGAGCCCCACTAGAGCGGTCAACACCTGCCTCTTCTGCATGGCCTCCTACTGCGAGAAGCACCTCAAAGCCCACAACGTCCGGCTGCCCCGGCACAAGCTGGTCCGGCCGCTTGAAGACCTACAGGCCCACATGTGCGGAGAGCATCAGAGGTCCCTGGAGCTGTTCTGCCGCAGTGACCAGATGTGCGTGTGCTTCCTGTGCGTAGAGTCCCAGCACAAGACCCACGAGACCGTGCCCGTGGAGGAGGAGTGGACGAAGAAGAAGATGCAGCTGGGAGACTCGGTGAAAGAAGTGCAGTGCCTGCTCCGGGAGAGACTGAGGAAGGTGGATAAGATCTTGGAGTCTGTCAGTGTCAGCAGGAGATCTGCCAAGAGTGAAATTGAGGACAGTCACCGTGTCTTCACCCAGCTCCTGCTCTCCATCGAGAGGAGTCACGACGTGACCATCAAGAGGATCAAGGAAAAGCAGAAAGAGGCAGAGGATCGTGCAGAGCAACTCATCAAAGACCTGCAGCAGGAAGTCGCCATGTTGCTGAAGAGAAAAGATGAACTGCAGAAGCTGGCACAAACAGAGAACCGAGTCCACTTTCTAAAGACATTCCCCAGCTTGTGTAATCCTCCAGTCACTTCAGACTGGTCCAGTGTCAGGGTTCCCACAGACCTCTTCGTGGGCATGGTGAGAAAGGCAGTGTCTTCAGTGAAGGAAGAAGTTCATAAGACGCTGGACACATTATATGCTCAAGTCCAATGA
>TU168833
aagggtttctttttttattattttacaacaatGGAAAGAACAACAGAAAAGGTTAGCAGTGTTCcaagaaggaaaatgaaaaatacaatgcgGGTTAATGATTTACTTGTTTTAACAATCAACACCTCAGTTATTTTGCTTgtgaacacaaataaaataataataatcatcctcataataatcataataaaaaaaaactttttcaaGACATTGAATCTTTATGTATTATCTTAAGACTGCGATATCCTTAAGGCTTCCTTGCAGGTGGTGATATCAATGtccttagaaaacaaaaacaataatacttgATAACTGACAAACTATTaaaagccaagaaaaaaaatctttcttcaTTGCCTTCTTGTTACTATCTGTGTGGAGGAGTAGTTCACATATTCCCAGAACAACACTTAATCAACATGGAGGTGACCTGTGCCTTGTGTAGAACCTGAGATCTCCGTAGTTCCACAAAGAAGAACCAAGAGAAGAATTCACCAAGGTGTTTATGTGTGTACACTATCTTCTTTCATGGGCTGTTTCTTTTACAAGAGTAGCAGAACTATtattgtaatggaaaaaaaaaaaacagtttggaaaaaataaatcctctgGTGGTAAAAATGGACTTTGGCTTTCTGAAAGGATCATTTTTTCgtaaacttttttcttttgttcttttggaCAGCCTTTACAGGATATATGCacgttattaataatattaaaattgttaaaGAACGTGGATAAACGCTGCAACCAGGGATCAGAGATGCAAGCATATGCTTCTCCAGAGTTCTCTCAAGCAATAAAGATGTGGTTACTACCCAACACAGGCAGTGGTGTCAGTTATCAAGTCCTCTAGatttgaaaccaaaaaaatatacattaaaaacatattatccACTACAACAAAGCCTCCTGGATACCTTATTCTAgttgaaaaaaaggaaatacagaaatgacatttctgctttcttttttgtatttatatatatataaaacataaaacattggcctttcattaattatgtttataacATGCATTTCTACTTACACATCCGGCAGAGAGCTAGCAAAATTAGGGTTTCAACAtgtttattgtgctttttgggggttgtattttttttttttacatggacTTTAGAAAGACACAGCTCTTTACATTACTTTCCTGTTTTCCCCTCCAGTCCAATGACCCGCCAGAAATATATGGCAGTGGTAAGAAGGAAGATATATATGTCTATGCAACTGGTGTTTAAGTTGAGGGAGGTATGGTACTACTGAGATAGTGTCTGTGCAGGGCACGGTCGGATTGGAATAGATTGAAAGGGGGATGGAAATTTGCATTGAGACTGAGCACCTGTGAAAGAGATAAGGAATGGGGACTGTTGAGGGGCCAGATAAGAGAGTTAATCTGACACCTTAACTTGAAAAGCTCCAATTGCAGGAACGCCAGTGATATCGCTCACAAACCtataataaacagaataacCTAGATGTGCGGCTATGGGACTCAGTTTCTTATAGATTTTGAATCAAATATACATGAATCACTGGCGTCTTGTttcagtttaaagtttaaagtaaaCACCAAGGTCTTTGTGGTTTCGGttgtttgctgctgttttacACTTCGCTTTCCAGCGTGACTTCATTTGCTTTTCAGTCACTTTTACCAAACAAGTAGTAAACAACTCAAGTCAAGGAACAGGTCCTAGAACAAATgtcatgctttaaaatgaatactcTAAATACGTTTTAGCTTtccatatatacattaatattttggACTCTCCTTAACCCCATGCCTTATAGACATTTTCTGAAGAGCATGCAAAACATTTCTCCAGAGGTTTCTGTTTGGCATTCTCTTGTTGCATCGATTACATTGTTCCCAGAAGAAGATACTTTCCAAACTCACCCAAACCAGTGTGGTCCTAGCAAAACGGGAGCAGCTGAAGTGGGACTAAAAGGGGTTACATATCTGATCTAAGAAATATGCTCAATGCATTGTAGTCAACAAGCCAAGCCTGAGAAAGACTGTACAGCAGATTAAGGAATTCATTACAGCACTGTTTTTGAATGTCTTCTGTTGATGTTTGTGGTTGACCACTTCCAGGTAACAGACCCAAACAAATTCAGAGGTGATCTCACAGTCTGTGGAAAAGCTATTGCACCAGTTGTTCTTTTGGGCAGCTTTAACAGAATATACCTTATTAGTAATATTGTTAAAGAGCATGGATAGACCCTCCCATCCAAATGTCCTCAACTGTACAAGACATTTCCTTCTTTAAGTGTGACTGACCTTCCTGACAGGTTACAAAGCAAGGATACAGTGGAATGCAGGGAAATGAAAGTTTCTGCATGATCTCAAGCTTGGCTACTGCTGGTCCAGTTTGCCTGGCCTTCTCTTTTTAAAGTAGTTCACTAGCAAACAGTGCAGGGGGACTTCAGAGGGAGGTCATGCTAAGGCAAGTGGGGATTGAGGGAGTTCTAGCACCAGTTAAATCTACAGATCTCTGAAGGGCTAAGGACCATTTCAGGTCCATTTCAGTCCCACGTGGATGTGAAGCTGTGAGGACCTCCTTTCCTGAACAACACATTCAGAGATATGAAAAAAAAGCCCTCAGAATGTACAATCCATGCAAACTGCAGTAATTACTGTCACTTTTAACCTTTAGCATTATTCACAGCACCAGTGATGACATAATCTTCAATTATCTGTTATTACACTGTTATTACACTTTGTCAGATCTACAGCCGATATGCATTCTGAGAGAGATTCCTCCCCTTCACCACCTACATCATACTTCCATATGCTGCCTTATACTAACTAATCCTATTCTGAGTTAGTAGTCCACGTTAATATCTCTACTACAGGGTTTCTTTGGCCTGCTTTTACAGCTCTGGCTTGGAGGTTTCATCCGATCTTAGTAGAGACATTGATTACAAGGCATAGGCAAGCTGGTCATAAAACATCTAATTTGGGTGTCCCAGTTCTTTGATGGTAACTTATAGTAGATCCTACAGACATGGGTACACACCAAATGGAAATGAGAGTGGAAGTTGGGTCCCTTCAAAAAGAAAGTATCTTTCATTGATGGAAGAATGAGCAGATAAGAATGAGAGGGAAACAATAGGATTTTCTTTTGAGAAGCTTGTGTGGTTAACAGATAtgatcttaaaataattaattgctcCTGGGCTAGTATGTTAAGTGTCTAAAGTCTGGCTTAGCAGAGTGCACACTTTACAACTGATCTtcaatttacatgttttaaaatataactctGAGAATCTAACATAATGGATATCAACcagtattttatgtgttttaattttgtctttttcaattagaattgtcatttaaacatgttaatttgAGGAATTTATCAATCGAGTTTGTCCTGTGAATggaaaacaagtaaatacacCTTCAGGCAGGTCCCACGATCAAACTTTCATCATGAGAACTTATCGAATGTATTTGCctgtttagagaaaaaaaagtatgcaGGTGTATCCCCAAAATAGGTTCAATTACTGGTTTCATAGAAACAGGCGTCTGTTACAAGTGGTATAAATATTTGCTTAAAATATCTTGCCAGGgagagaggaggatcATTATCACTGCATGGGGAGAGAGGTAT

Function

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012088 False 1074 mRNA 0.54 5 10629684 10634699
TU168833 True 3647 lncRNA 0.37 2 10633508 10684097

Neighbor

gene id symbol gene type direction distance location
AMCG00012086 LOC107749202,LOC104951120,LOC107733393 coding upstream 64831 10551670 ~ 10564853 (+)
AMCG00012087 LOC101065589 coding upstream 83739 10543413 ~ 10545945 (+)
AMCG00012084 NA coding upstream 237086 10363956 ~ 10392598 (+)
AMCG00012083 NA coding upstream 275941 10338828 ~ 10353743 (+)
AMCG00012082 NA coding upstream 349152 10265100 ~ 10280532 (+)
AMCG00012096 NA coding downstream 83947 10768044 ~ 10777082 (+)
AMCG00012097 NA coding downstream 109789 10793886 ~ 10796475 (+)
AMCG00012098 NA coding downstream 119271 10803368 ~ 10804229 (+)
AMCG00012099 NA coding downstream 128600 10812697 ~ 10816328 (+)
AMCG00012105 NA coding downstream 132491 10816588 ~ 10819586 (+)
G134498 NA non-coding upstream 30843 10598539 ~ 10598841 (+)
G134495 NA non-coding upstream 34278 10594849 ~ 10595406 (+)
G134346 NA non-coding upstream 201160 9886858 ~ 10428524 (+)
G134378 NA non-coding upstream 359630 10269680 ~ 10270054 (+)
G134369 NA non-coding upstream 384955 10194394 ~ 10244729 (+)
G134556 NA non-coding downstream 165761 10849858 ~ 10853291 (+)
G134615 NA non-coding downstream 283179 10967276 ~ 10982794 (+)
G134692 NA non-coding downstream 549584 11233681 ~ 11233883 (+)
G134698 NA non-coding downstream 616237 11300334 ~ 11302065 (+)
G134749 NA non-coding downstream 819863 11503960 ~ 11504648 (+)
G134343 NA other upstream 311866 10303273 ~ 10317818 (+)
G134373 NA other upstream 321845 10252810 ~ 10307839 (+)
G134337 NA other upstream 370460 10223004 ~ 10259224 (+)
G134366 NA other upstream 489227 10139954 ~ 10140457 (+)
G134365 NA other upstream 495092 10134027 ~ 10134592 (+)
G134613 NA other downstream 242509 10926606 ~ 10935107 (+)
AMCG00012112 NA other downstream 364968 11049065 ~ 11061030 (+)
G134697 fus,LOC103040960,LOC107658502 other downstream 558132 11242229 ~ 11293899 (+)
G134743 NA other downstream 752282 11436379 ~ 11446163 (+)
AMCG00012152 NA other downstream 935080 11619177 ~ 11870630 (+)

Expression


Co-expression Network