AMCG00012542 (nr2f5,LOC108433883,LOC107592459,LOC107726692,LOC105005680,LOC107592141,LOC103038004,LOC107671473,LOC100380645,LOC105891836)


Basic Information

Item Value
gene id AMCG00012542
gene name nr2f5,LOC108433883,LOC107592459,LOC107726692,LOC105005680,LOC107592141,LOC103038004,LOC107671473,LOC100380645,LOC105891836
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 21148238 ~ 21166777 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012542
ATGGTATTAAATCAGTGGCAAGAGAACATCTCGGCGGATCCCGGCTCCCAGCTCCAGGTGTGCAGCCAGGAGCCCGGGGGGACTCCCATCCAGACGCCGGGCACCCCTTCTGGGTCCACTCCGGGCAACGATGGGGACAAGATCCCCAACGTGGACTGTATGGTGTGCGGGGACAAGTCCAGCGGCAAGCACTACGGCCAGTTTACCTGCGAGGGGTGCAAGAGCTTCTTCAAGCGCTCGGTGAGGCGGAATCTGAGCTACACCTGCCGAGGGAACCGCGACTGTCCCATAGACCAGCACCATCGGAACCAGTGCCAGTACTGCCGCCTCAAGAAGTGCCTCAAAGTGGGCATGAGGAGAGAGGCTGTCCAGCGCGGCCGCATGTCCAGCTCCCAGTCGAGCCCGGGCCAGTACCTGAGCAACGGAGGCGACCCCTACAATGGCCAACCCTACCTGACTGGCTTCATCTCGCTGCTCCTGCGGGCTGAGCCCTACCCCACCTCTCGCTACGGTGCCCAATGCATGCAGTCCAACAACCTGATGGGCATCGAGAACATCTGTGAACTGGCGGCCCGCCTGCTGTTCAGCGCCGTGGAGTGGGCCAAGAACATCCCCTTCTTCCCCGACCTGCAGCTGATCGACCAGGTGTCTCTGCTGCGGATGTCGTGGAGTGAGCTGTTCGTTCTGAACGCCGCCCAGTGCTCCATGCCCTTGCACGTGGCACCCCTGCTGGCGGCCGCCGGCCTGCACGCCTCGCCTATGTCCGCCGAGCGCGTGGTGGCCTTCATGGACCACATCCGGGTCTTCCAGGAACAGGTGGAGAAGCTCAAGGCCCTGCAGGTGGACACCGCCGAGTACTCCTGCCTCAAAGCCATCGTGCTCTTCACCTCAGACGCCATGGGCCTGTCGGACGCGGCGCACGTGGAGAGCGTGCAGGAGAAGTCGCAGTGTGCCTTGGAGGAGTATGTGCGCAACCAGTACCCCGGGCAGCCCAACCGCTTTGGCCGTCTGCTGCTGCGCCTGCCCTCCCTGCGCATCGTCTCCTCGCCCGTCATCGAGCAGCTGTTCTTCGTGCGCCTGGTGGGCAAGACCCCCATCGAGACCCTGCTCAGGGACATGCTGCTGTCGGGCTCCAGCTACAACTGGCCCTACATGCCCGTGCAGAGGGACCGGGGCCTCTCCTTGCACTACAACGAGGGCGGGCCTTAA

Function

symbol description
nr2f5 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Acts upstream of or within response to retinoic acid. Predicted to be located in nucleus. Is expressed in several structures, including anterior neural keel; hindbrain neural keel; mesoderm; nervous system; and pharyngeal arch.

NR:

description
PREDICTED: nuclear receptor subfamily 2 group F member 5

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0032526 response to retinoic acid biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08547 NR2F1, TFCOUP1; COUP transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012542 True 1209 mRNA 0.64 4 21148238 21166777

Neighbor

gene id symbol gene type direction distance location
AMCG00012543 sv2a,LOC107592458,LOC107726650,LOC107671386 coding upstream 35291 21109538 ~ 21112947 (+)
AMCG00012544 sv2a,LOC107592174 coding upstream 38990 21105119 ~ 21109248 (+)
AMCG00012538 sf3b4 coding upstream 97433 21044249 ~ 21050805 (+)
AMCG00012540 NA coding upstream 109809 21013421 ~ 21038429 (+)
AMCG00012533 rbm8a coding upstream 191315 20951848 ~ 20956923 (+)
AMCG00012549 NA coding downstream 133287 21300064 ~ 21307188 (+)
AMCG00012550 NA coding downstream 148258 21315035 ~ 21317648 (+)
AMCG00012553 NA coding downstream 267668 21434445 ~ 21436426 (+)
AMCG00012555 NA coding downstream 271706 21438483 ~ 21443188 (+)
AMCG00012557 NA coding downstream 324072 21490849 ~ 21491478 (+)
G137539 NA non-coding upstream 390974 20757030 ~ 20757264 (+)
G137494 NA non-coding upstream 614279 20533752 ~ 20533959 (+)
G137364 NA non-coding upstream 819414 20321606 ~ 20328824 (+)
G137337 NA non-coding upstream 910365 20170426 ~ 20237873 (+)
G137634 NA non-coding downstream 53422 21220199 ~ 21221044 (+)
G137631 LOC107575789 non-coding downstream 65203 21231980 ~ 21267912 (+)
G137645 NA non-coding downstream 141441 21308218 ~ 21309033 (+)
G137669 NA non-coding downstream 435222 21601999 ~ 21602314 (+)
G137749 NA non-coding downstream 613289 21780066 ~ 21786045 (+)
G137583 NA other upstream 88975 21056695 ~ 21059263 (+)
AMCG00012539 otud7b,LOC106581836 other upstream 108489 20992490 ~ 21039749 (+)
AMCG00012523 NA other upstream 654451 20481114 ~ 20493787 (+)
AMCG00012521 NA other upstream 702951 20430925 ~ 20445287 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other upstream 725682 20401009 ~ 20422556 (+)
G137633 NA other downstream 46820 21213597 ~ 21219163 (+)
G137636 NA other downstream 57964 21224741 ~ 21230836 (+)
AMCG00012546 NA other downstream 78886 21245663 ~ 21253003 (+)
G137629 NA other downstream 103583 21270360 ~ 21332070 (+)
G137644 NA other downstream 136448 21303225 ~ 21316451 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010234 nr2f5 coding NC_007127.7 CM002900.2 46294337 ~ 46327301 (+)